First use setup.sh to download and setup the folders/files, secondly run ed.sh to run ED on a specific input file.

ed.sh

#!/bin/bash

docker run -ti --rm \
           --volume ${PWD}:/data \
           --env OMP_NUM_THREADS=1 \
           pecan/ed \
           /usr/local/bin/ed -s -f "$@"

setup.sh

#!/bin/bash

if [ ! -d "common" ]; then
    wget "https://github.com/ashiklom/edts-datasets/releases/download/common/common.tar.gz"
    tar xf common.tar.gz
    rm common.tar.gz
fi

for SITE in umbs tonzi; do
    if [ ! -d "$SITE" ]; then
        echo "Downloading data for site $SITE"
        wget "https://github.com/ashiklom/edts-datasets/releases/download/$SITE/$SITE.tar.gz"
        tar -xf "$SITE.tar.gz"
	    rm $SITE.tar.gz
    fi
done

for SITE in umbs.bg tonzi tonzi.harvest; do
  wget -O ED2IN-$SITE https://raw.githubusercontent.com/EDmodel/ED2/master/EDTS/Templates/ED2IN-$SITE
  mkdir -p test-outputs/$SITE
done