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robsyme/gist:157825

Created July 29, 2009 02:15
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gistfile1.mak
%-3.fa: %-1.fa
awk '/^>/ { getline s; if ($$3/($$2-$k+1)>=$c) \
{ print $$0 "\n" s } }' $< \
|ABYSS $v -k$k -l$l -e0 -o $@ -
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