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March 14, 2016 07:32
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Mar-14 07:26:36.530 [main] DEBUG nextflow.cli.Launcher - $> /usr/local/bin/nextflow run -process.executor ignite -with-timeline timeline.html . | |
Mar-14 07:26:36.645 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.17.3 | |
Mar-14 07:26:36.910 [main] INFO nextflow.cli.CmdRun - Launching ./main.nf | |
Mar-14 07:26:37.549 [main] DEBUG nextflow.Session - Session uuid: f25aca13-5ab7-45f6-9d3a-6fe5a5cf738a | |
Mar-14 07:26:37.555 [main] DEBUG nextflow.Session - Executor pool size: 2 | |
Mar-14 07:26:37.576 [main] DEBUG nextflow.cli.CmdRun - | |
Version: 0.17.3 build 3495 | |
Modified: 18-02-2016 11:00 UTC | |
System: Linux 4.2.0-25-generic | |
Runtime: Groovy 2.4.5 on OpenJDK 64-Bit Server VM 1.8.0_66-internal-b17 | |
Encoding: UTF-8 (UTF-8) | |
Process: 7232@server-bcc04a54-d969-4d30-bed9-9d13fe49763a [127.0.1.1] | |
Mar-14 07:26:37.595 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /data/bin | |
Mar-14 07:26:37.634 [main] DEBUG nextflow.Session - Session start invoked | |
Mar-14 07:26:37.634 [main] DEBUG nextflow.Session - Registering observer: nextflow.trace.TimelineObserver | |
Mar-14 07:26:37.649 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start | |
Mar-14 07:26:37.649 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing | |
Mar-14 07:26:37.899 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution | |
Mar-14 07:26:38.045 [main] DEBUG nextflow.processor.ProcessFactory - Discovered executor class: nextflow.executor.IgExecutor | |
Mar-14 07:26:38.175 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: ignite | |
Mar-14 07:26:38.176 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'ignite' | |
Mar-14 07:26:38.176 [main] DEBUG nextflow.processor.ProcessFactory - Loading executor class: nextflow.executor.IgExecutor | |
Mar-14 07:26:38.188 [main] DEBUG nextflow.executor.Executor - Initializing executor: ignite | |
Mar-14 07:26:38.194 [main] INFO nextflow.executor.Executor - [warm up] executor > ignite | |
Mar-14 07:26:38.208 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'ignite' > pollInterval: 5s; dumpInterval: 5m | |
Mar-14 07:26:38.220 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor | |
Mar-14 07:26:38.221 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: ignite) | |
Mar-14 07:26:38.232 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: ignite | |
Mar-14 07:26:38.312 [main] DEBUG nextflow.executor.IgConnector - Create Ignite master node | |
Mar-14 07:26:38.363 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider | |
Mar-14 07:26:38.367 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'master' -- [:] | |
Mar-14 07:26:38.458 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow | |
Mar-14 07:26:38.733 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a | |
Mar-14 07:26:38.740 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off | |
Mar-14 07:26:38.740 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 4.2.0-25-generic amd64 | |
Mar-14 07:26:38.740 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: ubuntu | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: OpenJDK Runtime Environment 1.8.0_66-internal-b17 Oracle Corporation OpenJDK 64-Bit Server VM 25.66-b17 | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 0.93GB | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)] | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null | |
Mar-14 07:26:38.741 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, -Dcapsule.app=nextflow_0.17.3, -Djava.awt.headless=true, -Dcapsule.jar=/home/ubuntu/.nextflow/framework/0.17.3/nextflow-0.17.3-one.jar] | |
Mar-14 07:26:38.742 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-meta', 'igfs-data'] | |
Mar-14 07:26:38.749 [ignite-#6%pub-nextflow%] WARN o.a.ignite.internal.GridDiagnostic - Initial heap size is 62MB (should be no less than 512MB, use -Xms512m -Xmx512m). | |
Mar-14 07:26:38.749 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=master] | |
Mar-14 07:26:38.838 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 130.56.252.228, fe80:0:0:0:f816:3eff:fec5:10f5%eth0 | |
Mar-14 07:26:38.839 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: FA163EC510F5 | |
Mar-14 07:26:38.848 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins: | |
Mar-14 07:26:38.849 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None | |
Mar-14 07:26:38.849 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - | |
Mar-14 07:26:38.942 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/c44de6ee-8d5c-4ec3-bb4e-062d361d3807-7232] | |
Mar-14 07:26:38.943 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0] | |
Mar-14 07:26:38.952 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0] | |
Mar-14 07:26:38.985 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation) | |
Mar-14 07:26:39.031 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=4554617c,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi | |
Mar-14 07:26:39.031 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=4554617c,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi] | |
Mar-14 07:26:39.047 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi. | |
Mar-14 07:26:39.049 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, communication encryption=off] | |
Mar-14 07:26:39.213 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211] | |
Mar-14 07:26:39.248 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/c44de6ee-8d5c-4ec3-bb4e-062d361d3807-7232] | |
Mar-14 07:26:39.250 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400] | |
Mar-14 07:26:39.285 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0] | |
Mar-14 07:26:39.304 [main] WARN o.a.i.s.d.t.i.m.TcpDiscoveryMulticastIpFinder - TcpDiscoveryMulticastIpFinder has no pre-configured addresses (it is recommended in production to specify at least one address in TcpDiscoveryMulticastIpFinder.getAddresses() configuration property) | |
Mar-14 07:26:39.872 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED | |
Mar-14 07:26:39.874 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED | |
Mar-14 07:26:39.876 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED | |
Mar-14 07:26:40.048 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property). | |
Mar-14 07:26:40.101 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED] | |
Mar-14 07:26:40.110 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions | |
Mar-14 07:26:40.194 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED] | |
Mar-14 07:26:40.204 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED] | |
Mar-14 07:26:40.481 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED] | |
Mar-14 07:26:40.491 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED] | |
Mar-14 07:26:40.495 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED] | |
Mar-14 07:26:40.768 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <igfs-data> Starting rebalancing in ASYNC mode: igfs-data | |
Mar-14 07:26:40.769 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <allSessions> Starting rebalancing in ASYNC mode: allSessions | |
Mar-14 07:26:40.769 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-sys-cache> Starting rebalancing in SYNC mode: ignite-sys-cache | |
Mar-14 07:26:40.770 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-atomics-sys-cache> Starting rebalancing in SYNC mode: ignite-atomics-sys-cache | |
Mar-14 07:26:40.770 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <igfs-meta> Starting rebalancing in ASYNC mode: igfs-meta | |
Mar-14 07:26:40.771 [main] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-marshaller-sys-cache> Starting rebalancing in SYNC mode: ignite-marshaller-sys-cache | |
Mar-14 07:26:40.824 [preloader-demand-worker-#73%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-marshaller-sys-cache> Completed rebalancing in SYNC mode [cache=ignite-marshaller-sys-cache, time=61 ms] | |
Mar-14 07:26:40.827 [preloader-demand-worker-#63%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-atomics-sys-cache> Completed rebalancing in SYNC mode [cache=ignite-atomics-sys-cache, time=61 ms] | |
Mar-14 07:26:40.827 [preloader-demand-worker-#55%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <allSessions> Completed rebalancing in ASYNC mode [cache=allSessions, time=61 ms] | |
Mar-14 07:26:40.827 [preloader-demand-worker-#59%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <ignite-sys-cache> Completed rebalancing in SYNC mode [cache=ignite-sys-cache, time=61 ms] | |
Mar-14 07:26:40.830 [preloader-demand-worker-#69%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <igfs-meta> Completed rebalancing in ASYNC mode [cache=igfs-meta, time=61 ms] | |
Mar-14 07:26:40.830 [preloader-demand-worker-#50%nextflow%] INFO o.a.i.i.p.c.d.d.p.GridDhtPreloader - <igfs-data> Completed rebalancing in ASYNC mode [cache=igfs-data, time=61 ms] | |
Mar-14 07:26:40.894 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible) | |
Mar-14 07:26:40.900 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true | |
Mar-14 07:26:40.900 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration) | |
Mar-14 07:26:40.901 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
Mar-14 07:26:40.901 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat} | |
Mar-14 07:26:40.901 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
Mar-14 07:26:40.901 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
>>> +----------------------------------------------------------------------+ | |
>>> Ignite ver. 1.4.0#20150924-sha1:c2def5f647e410e9f25383d3e74f393e4d1348a5 | |
>>> +----------------------------------------------------------------------+ | |
>>> OS name: Linux 4.2.0-25-generic amd64 | |
>>> CPU(s): 1 | |
>>> Heap: 0.93GB | |
>>> VM name: 7232@server-bcc04a54-d969-4d30-bed9-9d13fe49763a | |
>>> Grid name: nextflow | |
>>> Local node [ID=C44DE6EE-8D5C-4EC3-BB4E-062D361D3807, order=1, clientMode=false] | |
>>> Local node addresses: [vm-130-56-252-228.nci.org.au/0:0:0:0:0:0:0:1%lo, /127.0.0.1, /130.56.252.228] | |
>>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 UDP:47400 TCP:47500 TCP:48100 | |
Mar-14 07:26:40.903 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=1, servers=1, clients=0, CPUs=1, heap=0.93GB] | |
Mar-14 07:26:40.911 [disco-event-worker-#43%nextflow%] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `localhost` [master] > cpus: 1; mem: 3.9 GB; free disk: 28.3 GB (/tmp) | |
Mar-14 07:26:40.965 [main] DEBUG nextflow.util.RemoteSession - Packed library (3 files) at path: /tmp/nxf-8451400741738606063 | |
Mar-14 07:26:40.976 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> slots: 1 | |
Mar-14 07:26:40.983 [Topology watcher] DEBUG n.processor.TaskPollingMonitor - Monitor current capacity: 2 (after inc: 2) | |
Mar-14 07:26:41.036 [main] DEBUG nextflow.executor.IgConnector - Cluster shutdownOnComplete: false | |
Mar-14 07:26:41.098 [main] DEBUG nextflow.Session - >>> barrier register (process: test) | |
Mar-14 07:26:41.352 [main] DEBUG n.processor.ParallelTaskProcessor - Creating operator > test -- maxForks: 2 | |
Mar-14 07:26:41.407 [main] DEBUG nextflow.script.ScriptRunner - > Await termination | |
Mar-14 07:26:41.407 [main] DEBUG nextflow.Session - Session await | |
Mar-14 07:26:41.729 [Actor Thread 5] INFO nextflow.processor.TaskDispatcher - [04/14e2ef] Submitted process > test (2) | |
Mar-14 07:26:41.740 [Actor Thread 4] INFO nextflow.processor.TaskDispatcher - [59/2f39be] Submitted process > test (1) | |
Mar-14 07:26:41.757 [ignite-#7%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (2) - workdir: /data/work/04/14e2ef74c9be67545d720515b6e6e3 - remote: false | |
Mar-14 07:26:50.986 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:26:52.254 [ignite-#7%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (2) - exitStatus: 0 | |
Mar-14 07:26:52.261 [Thread-2] DEBUG nextflow.file.FileHelper - NFS path (false): /data/work | |
Mar-14 07:26:52.286 [ignite-#8%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (1) - workdir: /data/work/59/2f39be64d3d4c950c44fd8cecad7e0 - remote: false | |
Mar-14 07:26:52.287 [Actor Thread 2] INFO nextflow.processor.TaskDispatcher - [ae/500ef2] Submitted process > test (3) | |
Mar-14 07:27:00.997 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:02.661 [ignite-#8%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (1) - exitStatus: 0 | |
Mar-14 07:27:02.674 [ignite-#9%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (3) - workdir: /data/work/ae/500ef2495f3cbf68f517dc83ca965f - remote: false | |
Mar-14 07:27:02.679 [Actor Thread 5] INFO nextflow.processor.TaskDispatcher - [c6/ae4abb] Submitted process > test (4) | |
Mar-14 07:27:10.999 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:13.020 [ignite-#9%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (3) - exitStatus: 0 | |
Mar-14 07:27:13.034 [ignite-#10%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (4) - workdir: /data/work/c6/ae4abbe127a999d1d9a2ff3d2cd806 - remote: false | |
Mar-14 07:27:13.036 [Actor Thread 6] INFO nextflow.processor.TaskDispatcher - [e9/73baf4] Submitted process > test (5) | |
Mar-14 07:27:21.000 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:23.363 [ignite-#10%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (4) - exitStatus: 0 | |
Mar-14 07:27:23.383 [ignite-#11%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (5) - workdir: /data/work/e9/73baf41dcf24e5e318c4fc58e535fa - remote: false | |
Mar-14 07:27:23.384 [Actor Thread 8] INFO nextflow.processor.TaskDispatcher - [3f/99ffdc] Submitted process > test (6) | |
Mar-14 07:27:31.001 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:33.715 [ignite-#11%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (5) - exitStatus: 0 | |
Mar-14 07:27:33.731 [ignite-#12%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (6) - workdir: /data/work/3f/99ffdc23b620bc3ab0ca7c187750f8 - remote: false | |
Mar-14 07:27:33.732 [Actor Thread 9] INFO nextflow.processor.TaskDispatcher - [33/31dfc8] Submitted process > test (7) | |
Mar-14 07:27:40.901 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow - | |
Metrics for local node (to disable set 'metricsLogFrequency' to 0) | |
^-- Node [id=c44de6ee, name=nextflow] | |
^-- H/N/C [hosts=1, nodes=1, CPUs=1] | |
^-- CPU [cur=0.67%, avg=1.98%, GC=0%] | |
^-- Heap [used=147MB, free=84.57%, comm=223MB] | |
^-- Public thread pool [active=1, idle=15, qSize=0] | |
^-- System thread pool [active=0, idle=16, qSize=0] | |
^-- Outbound messages queue [size=0] | |
Mar-14 07:27:41.002 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:44.055 [ignite-#12%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (6) - exitStatus: 0 | |
Mar-14 07:27:44.074 [ignite-#13%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (7) - workdir: /data/work/33/31dfc8984cd256937de59cd596ee3d - remote: false | |
Mar-14 07:27:44.075 [Actor Thread 11] INFO nextflow.processor.TaskDispatcher - [66/2b5e1a] Submitted process > test (8) | |
Mar-14 07:27:44.084 [Actor Thread 1] DEBUG n.processor.ParallelTaskProcessor - <test> Poison pill arrived | |
Mar-14 07:27:44.085 [Actor Thread 3] DEBUG nextflow.processor.StateObj - <test> State before poison: StateObj[submitted: 10; completed: 6; poisoned: false; allScalar: false] | |
Mar-14 07:27:51.003 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:27:54.433 [ignite-#13%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (7) - exitStatus: 0 | |
Mar-14 07:27:54.456 [ignite-#14%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (8) - workdir: /data/work/66/2b5e1a4c638c48c0fcfbd77db07669 - remote: false | |
Mar-14 07:27:54.457 [Actor Thread 13] INFO nextflow.processor.TaskDispatcher - [2b/bf8d63] Submitted process > test (9) | |
Mar-14 07:28:01.004 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:28:04.810 [ignite-#14%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (8) - exitStatus: 0 | |
Mar-14 07:28:04.831 [ignite-#15%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (9) - workdir: /data/work/2b/bf8d63f95e61cb1fe1d16da1fb49bd - remote: false | |
Mar-14 07:28:04.832 [Actor Thread 14] INFO nextflow.processor.TaskDispatcher - [db/5f2cb1] Submitted process > test (10) | |
Mar-14 07:28:11.004 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:28:15.151 [ignite-#15%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (9) - exitStatus: 0 | |
Mar-14 07:28:16.217 [ignite-#16%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Running task > name: test (10) - workdir: /data/work/db/5f2cb1796a9fbb816f1145fed7361f - remote: false | |
Mar-14 07:28:21.005 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:28:26.553 [ignite-#16%pub-nextflow%] DEBUG nextflow.executor.IgScriptTask - Completed task > test (10) - exitStatus: 0 | |
Mar-14 07:28:26.556 [Actor Thread 3] DEBUG nextflow.processor.TaskProcessor - <test> Sending poison pills and terminating process | |
Mar-14 07:28:26.564 [Actor Thread 3] DEBUG nextflow.Session - <<< barrier arrive (process: test) | |
Mar-14 07:28:26.565 [main] DEBUG nextflow.Session - Session await > processes completed | |
Mar-14 07:28:26.566 [Actor Thread 16] DEBUG n.processor.ParallelTaskProcessor - <test> After stop | |
Mar-14 07:28:31.006 [Topology watcher] DEBUG nextflow.executor.IgConnector - Cluster metrics >> cpus: 1 | |
Mar-14 07:28:31.554 [Thread-2] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: ignite) | |
Mar-14 07:28:31.555 [main] DEBUG nextflow.Session - Session await > done | |
Mar-14 07:28:31.600 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully stopped: TCP binary | |
Mar-14 07:28:31.620 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: allSessions | |
Mar-14 07:28:31.620 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: ignite-marshaller-sys-cache | |
Mar-14 07:28:31.621 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: ignite-sys-cache | |
Mar-14 07:28:31.621 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: ignite-atomics-sys-cache | |
Mar-14 07:28:31.621 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: igfs-meta | |
Mar-14 07:28:31.621 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Stopped cache: igfs-data | |
Mar-14 07:28:31.621 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Unregistered SPI MBean: org.apache:clsLdr=4554617c,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi | |
Mar-14 07:28:31.621 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI stopped ok. | |
Mar-14 07:28:31.636 [main] INFO o.a.i.internal.IgniteKernal%nextflow - | |
>>> +---------------------------------------------------------------------------------+ | |
>>> Ignite ver. 1.4.0#20150924-sha1:c2def5f647e410e9f25383d3e74f393e4d1348a5 stopped OK | |
>>> +---------------------------------------------------------------------------------+ | |
>>> Grid name: nextflow | |
>>> Grid uptime: 00:01:50:737 | |
Mar-14 07:28:31.643 [main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline | |
Mar-14 07:28:31.670 [main] DEBUG nextflow.Session - Session destroyed | |
Mar-14 07:28:31.674 [Thread-1] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline |
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