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August 18, 2015 12:14
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| Apache Maven 3.0.5 | |
| Maven home: /usr/share/maven | |
| Java version: 1.7.0_79, vendor: Oracle Corporation | |
| Java home: /usr/lib/jvm/java-7-openjdk-amd64/jre | |
| Default locale: en_GB, platform encoding: UTF-8 | |
| OS name: "linux", version: "3.19.0-25-generic", arch: "amd64", family: "unix" | |
| [INFO] Error stacktraces are turned on. | |
| [DEBUG] Reading global settings from /usr/share/maven/conf/settings.xml | |
| [DEBUG] Reading user settings from /home/ross/.m2/settings.xml | |
| [DEBUG] Using local repository at /home/ross/.m2/repository | |
| [DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10 for /home/ross/.m2/repository | |
| [INFO] Scanning for projects... | |
| [DEBUG] Extension realms for project org.xml-cml:ami2:jar:0.1-SNAPSHOT: (none) | |
| [DEBUG] Looking up lifecyle mappings for packaging jar from ClassRealm[plexus.core, parent: null] | |
| [WARNING] | |
| [WARNING] Some problems were encountered while building the effective model for org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
| [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-surefire-plugin is missing. @ line 228, column 12 | |
| [WARNING] | |
| [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. | |
| [WARNING] | |
| [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. | |
| [WARNING] | |
| [DEBUG] === REACTOR BUILD PLAN ================================================ | |
| [DEBUG] Project: org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
| [DEBUG] Tasks: [clean, install] | |
| [DEBUG] Style: Regular | |
| [DEBUG] ======================================================================= | |
| [INFO] | |
| [INFO] ------------------------------------------------------------------------ | |
| [INFO] Building AMI 0.1-SNAPSHOT | |
| [INFO] ------------------------------------------------------------------------ | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
| [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
| [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
| [DEBUG] === PROJECT BUILD PLAN ================================================ | |
| [DEBUG] Project: org.xml-cml:ami2:0.1-SNAPSHOT | |
| [DEBUG] Dependencies (collect): [] | |
| [DEBUG] Dependencies (resolve): [compile, runtime, test] | |
| [DEBUG] Repositories (dependencies): [ebi-repo (http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo/, releases), ebi-repo-snapshots (http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/, snapshots), ebi-repo-3rd (http://www.ebi.ac.uk/~maven/m2repo, releases+snapshots), ucc-repo (https://maven.ch.cam.ac.uk/m2repo, releases+snapshots), central (https://repo.maven.apache.org/maven2, releases)] | |
| [DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, releases)] | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-clean-plugin:2.5:clean (default-clean) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <directory default-value="${project.build.directory}"/> | |
| <excludeDefaultDirectories default-value="false">${clean.excludeDefaultDirectories}</excludeDefaultDirectories> | |
| <failOnError default-value="true">${maven.clean.failOnError}</failOnError> | |
| <followSymLinks default-value="false">${clean.followSymLinks}</followSymLinks> | |
| <outputDirectory default-value="${project.build.outputDirectory}"/> | |
| <reportDirectory default-value="${project.reporting.outputDirectory}"/> | |
| <retryOnError default-value="true">${maven.clean.retryOnError}</retryOnError> | |
| <skip default-value="false">${clean.skip}</skip> | |
| <testOutputDirectory default-value="${project.build.testOutputDirectory}"/> | |
| <verbose>${clean.verbose}</verbose> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.3:resources (default-resources) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
| <escapeString>${maven.resources.escapeString}</escapeString> | |
| <filters>${project.build.filters}</filters> | |
| <includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs> | |
| <outputDirectory>${project.build.outputDirectory}</outputDirectory> | |
| <overwrite default-value="false">${maven.resources.overwrite}</overwrite> | |
| <project>${project}</project> | |
| <resources>${project.resources}</resources> | |
| <session>${session}</session> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <basedir default-value="${basedir}"/> | |
| <buildDirectory default-value="${project.build.directory}"/> | |
| <classpathElements default-value="${project.compileClasspathElements}"/> | |
| <compileSourceRoots default-value="${project.compileSourceRoots}"/> | |
| <compilerId default-value="javac">${maven.compiler.compilerId}</compilerId> | |
| <compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy> | |
| <compilerVersion>${maven.compiler.compilerVersion}</compilerVersion> | |
| <debug default-value="true">${maven.compiler.debug}</debug> | |
| <debuglevel>${maven.compiler.debuglevel}</debuglevel> | |
| <encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
| <executable>${maven.compiler.executable}</executable> | |
| <failOnError default-value="true">${maven.compiler.failOnError}</failOnError> | |
| <fork default-value="false">${maven.compiler.fork}</fork> | |
| <generatedSourcesDirectory default-value="${project.build.directory}/generated-sources/annotations"/> | |
| <maxmem>${maven.compiler.maxmem}</maxmem> | |
| <meminitial>${maven.compiler.meminitial}</meminitial> | |
| <optimize default-value="false">${maven.compiler.optimize}</optimize> | |
| <outputDirectory default-value="${project.build.outputDirectory}"/> | |
| <outputFileName>${project.build.finalName}</outputFileName> | |
| <projectArtifact default-value="${project.artifact}"/> | |
| <session default-value="${session}"/> | |
| <showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation> | |
| <showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings> | |
| <skipMultiThreadWarning default-value="${false}">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning> | |
| <source default-value="1.5">${maven.compiler.source}</source> | |
| <staleMillis default-value="0">${lastModGranularityMs}</staleMillis> | |
| <target default-value="1.5">${maven.compiler.target}</target> | |
| <verbose default-value="false">${maven.compiler.verbose}</verbose> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.3:testResources (default-testResources) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
| <escapeString>${maven.resources.escapeString}</escapeString> | |
| <filters>${project.build.filters}</filters> | |
| <includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs> | |
| <outputDirectory>${project.build.testOutputDirectory}</outputDirectory> | |
| <overwrite default-value="false">${maven.resources.overwrite}</overwrite> | |
| <project>${project}</project> | |
| <resources>${project.testResources}</resources> | |
| <session>${session}</session> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:2.5.1:testCompile (default-testCompile) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <basedir default-value="${basedir}"/> | |
| <buildDirectory default-value="${project.build.directory}"/> | |
| <classpathElements default-value="${project.testClasspathElements}"/> | |
| <compileSourceRoots default-value="${project.testCompileSourceRoots}"/> | |
| <compilerId default-value="javac">${maven.compiler.compilerId}</compilerId> | |
| <compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy> | |
| <compilerVersion>${maven.compiler.compilerVersion}</compilerVersion> | |
| <debug default-value="true">${maven.compiler.debug}</debug> | |
| <debuglevel>${maven.compiler.debuglevel}</debuglevel> | |
| <encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
| <executable>${maven.compiler.executable}</executable> | |
| <failOnError default-value="true">${maven.compiler.failOnError}</failOnError> | |
| <fork default-value="false">${maven.compiler.fork}</fork> | |
| <generatedTestSourcesDirectory default-value="${project.build.directory}/generated-test-sources/test-annotations"/> | |
| <maxmem>${maven.compiler.maxmem}</maxmem> | |
| <meminitial>${maven.compiler.meminitial}</meminitial> | |
| <optimize default-value="false">${maven.compiler.optimize}</optimize> | |
| <outputDirectory default-value="${project.build.testOutputDirectory}"/> | |
| <outputFileName>${project.build.finalName}</outputFileName> | |
| <session default-value="${session}"/> | |
| <showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation> | |
| <showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings> | |
| <skip>${maven.test.skip}</skip> | |
| <skipMultiThreadWarning default-value="${false}">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning> | |
| <source default-value="1.5">${maven.compiler.source}</source> | |
| <staleMillis default-value="0">${lastModGranularityMs}</staleMillis> | |
| <target default-value="1.5">${maven.compiler.target}</target> | |
| <testSource>${maven.compiler.testSource}</testSource> | |
| <testTarget>${maven.compiler.testTarget}</testTarget> | |
| <verbose default-value="false">${maven.compiler.verbose}</verbose> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.10:test (default-test) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <argLine>${argLine}</argLine> | |
| <basedir default-value="${basedir}"/> | |
| <childDelegation default-value="false">${childDelegation}</childDelegation> | |
| <classesDirectory default-value="${project.build.outputDirectory}"/> | |
| <debugForkedProcess>${maven.surefire.debug}</debugForkedProcess> | |
| <disableXmlReport default-value="false">${disableXmlReport}</disableXmlReport> | |
| <enableAssertions default-value="true">${enableAssertions}</enableAssertions> | |
| <excludedGroups>${excludedGroups}</excludedGroups> | |
| <failIfNoTests>${failIfNoTests}</failIfNoTests> | |
| <forkMode default-value="once">${forkMode}</forkMode> | |
| <forkedProcessTimeoutInSeconds>${surefire.timeout}</forkedProcessTimeoutInSeconds> | |
| <groups>${groups}</groups> | |
| <junitArtifactName default-value="junit:junit">${junitArtifactName}</junitArtifactName> | |
| <jvm>${jvm}</jvm> | |
| <localRepository>${localRepository}</localRepository> | |
| <objectFactory>${objectFactory}</objectFactory> | |
| <parallel>${parallel}</parallel> | |
| <parallelMavenExecution default-value="${session.parallel}"/> | |
| <perCoreThreadCount default-value="true">${perCoreThreadCount}</perCoreThreadCount> | |
| <pluginArtifactMap>${plugin.artifactMap}</pluginArtifactMap> | |
| <printSummary default-value="true">${surefire.printSummary}</printSummary> | |
| <project default-value="${project}"/> | |
| <projectArtifactMap>${project.artifactMap}</projectArtifactMap> | |
| <redirectTestOutputToFile default-value="false">${maven.test.redirectTestOutputToFile}</redirectTestOutputToFile> | |
| <remoteRepositories>${project.pluginArtifactRepositories}</remoteRepositories> | |
| <reportFormat default-value="brief">${surefire.reportFormat}</reportFormat> | |
| <reportNameSuffix default-value="">${surefire.reportNameSuffix}</reportNameSuffix> | |
| <reportsDirectory default-value="${project.build.directory}/surefire-reports"/> | |
| <runOrder default-value="filesystem"/> | |
| <session>${session}</session> | |
| <skip default-value="false">${maven.test.skip}</skip> | |
| <skipExec>${maven.test.skip.exec}</skipExec> | |
| <skipTests default-value="false">${skipTests}</skipTests> | |
| <test>${test}</test> | |
| <testClassesDirectory default-value="${project.build.testOutputDirectory}"/> | |
| <testFailureIgnore default-value="false">${maven.test.failure.ignore}</testFailureIgnore> | |
| <testNGArtifactName default-value="org.testng:testng">${testNGArtifactName}</testNGArtifactName> | |
| <testSourceDirectory default-value="${project.build.testSourceDirectory}"/> | |
| <threadCount>${threadCount}</threadCount> | |
| <trimStackTrace default-value="true">${trimStackTrace}</trimStackTrace> | |
| <useFile default-value="true">${surefire.useFile}</useFile> | |
| <useManifestOnlyJar default-value="true">${surefire.useManifestOnlyJar}</useManifestOnlyJar> | |
| <useSystemClassLoader default-value="true">${surefire.useSystemClassLoader}</useSystemClassLoader> | |
| <useUnlimitedThreads default-value="false">${useUnlimitedThreads}</useUnlimitedThreads> | |
| <workingDirectory>${basedir}</workingDirectory> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.4:jar (default-jar) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <classesDirectory default-value="${project.build.outputDirectory}"/> | |
| <defaultManifestFile default-value="${project.build.outputDirectory}/META-INF/MANIFEST.MF"/> | |
| <finalName default-value="${project.build.finalName}">${jar.finalName}</finalName> | |
| <forceCreation default-value="false">${jar.forceCreation}</forceCreation> | |
| <outputDirectory default-value="${project.build.directory}"/> | |
| <project default-value="${project}"/> | |
| <session default-value="${session}"/> | |
| <skipIfEmpty default-value="false">${jar.skipIfEmpty}</skipIfEmpty> | |
| <useDefaultManifestFile default-value="false">${jar.useDefaultManifestFile}</useDefaultManifestFile> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.codehaus.mojo:appassembler-maven-plugin:1.8.1:assemble (assembly) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <artifacts default-value="${project.runtimeArtifacts}"/> | |
| <assembleDirectory default-value="${project.build.directory}/appassembler">${assembleDirectory}</assembleDirectory> | |
| <binFolder default-value="bin"/> | |
| <buildFilters default-value="${project.build.filters}"/> | |
| <configurationDirectory default-value="etc"/> | |
| <configurationSourceDirectory default-value="src/main/config"/> | |
| <copyConfigurationDirectory default-value="false"/> | |
| <encoding default-value="${project.build.sourceEncoding}"/> | |
| <filterConfigurationDirectory default-value="false"/> | |
| <generateRepository default-value="true"/> | |
| <includeConfigurationDirectoryInClasspath default-value="true"/> | |
| <localRepository default-value="${localRepository}"/> | |
| <logsDirectory>${logsDirectory}</logsDirectory> | |
| <mavenProject default-value="${project}"/> | |
| <programs> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.gene.GenePlugin</mainClass> | |
| <id>ami2-gene</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.identifier.IdentifierPlugin</mainClass> | |
| <id>ami2-identifier</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.phylotree.PhyloTreePlugin</mainClass> | |
| <id>ami2-phylotree</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.regex.RegexPlugin</mainClass> | |
| <id>ami2-regex</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.sequence.SequencePlugin</mainClass> | |
| <id>ami2-sequence</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.species.SpeciesPlugin</mainClass> | |
| <id>ami2-species</id> | |
| </program> | |
| <program> | |
| <mainClass>org.xmlcml.ami2.plugins.word.WordPlugin</mainClass> | |
| <id>ami2-word</id> | |
| </program> | |
| </programs> | |
| <projectArtifact default-value="${project.artifact}"/> | |
| <projectArtifactFirstInClassPath default-value="false"/> | |
| <repositoryLayout default-value="default">flat</repositoryLayout> | |
| <repositoryName default-value="repo"/> | |
| <session default-value="${session}"/> | |
| <showConsoleWindow default-value="true"/> | |
| <tempDirectory>${tempDirectory}</tempDirectory> | |
| <unixScriptTemplate>${unixScriptTemplate}</unixScriptTemplate> | |
| <useAllProjectDependencies default-value="false"/> | |
| <useTimestampInSnapshotFileName default-value="true"/> | |
| <useWildcardClassPath default-value="false"/> | |
| <windowsScriptTemplate>${windowsScriptTemplate}</windowsScriptTemplate> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.vafer:jdeb:1.3:jdeb (default) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <attach default-value="true"/> | |
| <baseDir default-value="${basedir}"/> | |
| <buildDirectory>${project.build.directory}</buildDirectory> | |
| <changesIn default-value="[[baseDir]]/CHANGES.txt"/> | |
| <changesOut default-value="[[buildDir]]/[[artifactId]]_[[version]]_all.changes"/> | |
| <changesSave default-value="[[baseDir]]/CHANGES.txt"/> | |
| <compression default-value="gzip"/> | |
| <controlDir default-value="[[baseDir]]/src/deb/control"/> | |
| <dataSet> | |
| <data> | |
| <src>/home/ross/workspace/ami-plugin/target/appassembler/</src> | |
| <type>directory</type> | |
| <mapper> | |
| <type>perm</type> | |
| <filemode>555</filemode> | |
| <prefix>/usr/share/ami-repo</prefix> | |
| </mapper> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-gene</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-gene</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-identifier</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-identifier</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-phylotree</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-phylotree</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-regex</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-regex</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-sequence</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-sequence</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-species</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-species</linkTarget> | |
| </data> | |
| <data> | |
| <type>link</type> | |
| <symlink>true</symlink> | |
| <linkName>/usr/bin/ami2-word</linkName> | |
| <linkTarget>/usr/share/ami-repo/bin/ami2-word</linkTarget> | |
| </data> | |
| </dataSet> | |
| <deb default-value="[[buildDir]]/[[artifactId]]_[[version]]_all.[[extension]]"/> | |
| <installDir default-value="/opt/[[artifactId]]"/> | |
| <project default-value="${project}"/> | |
| <session default-value="${session}"/> | |
| <settings default-value="${settings}"/> | |
| <signCfgPrefix default-value="jdeb."/> | |
| <signMethod default-value="debsig-verify"/> | |
| <signPackage default-value="false"/> | |
| <signRole default-value="origin"/> | |
| <skip default-value="false"/> | |
| <skipPOMs default-value="true"/> | |
| <skipSubmodules default-value="false"/> | |
| <snapshotEnv default-value="SNAPSHOT"/> | |
| <snapshotExpand default-value="false"/> | |
| <submodules default-value="true"/> | |
| <type default-value="deb"/> | |
| <verbose default-value="false"/> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-assembly-plugin:2.4.1:single (default) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <appendAssemblyId default-value="true">${assembly.appendAssemblyId}</appendAssemblyId> | |
| <attach default-value="true">${assembly.attach}</attach> | |
| <basedir default-value="${project.basedir}"/> | |
| <classifier>${classifier}</classifier> | |
| <descriptor>src/main/assembly/bin.xml</descriptor> | |
| <descriptorId>${descriptorId}</descriptorId> | |
| <dryRun default-value="false">${assembly.dryRun}</dryRun> | |
| <encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
| <escapeString>${assembly.escapeString}</escapeString> | |
| <finalName default-value="${project.build.finalName}"/> | |
| <ignoreDirFormatExtensions default-value="true"/> | |
| <ignoreMissingDescriptor default-value="false">${assembly.ignoreMissingDescriptor}</ignoreMissingDescriptor> | |
| <ignorePermissions default-value="false">${assembly.ignorePermissions}</ignorePermissions> | |
| <includeSite default-value="false">${includeSite}</includeSite> | |
| <localRepository default-value="${localRepository}"/> | |
| <outputDirectory default-value="${project.build.directory}"/> | |
| <reactorProjects default-value="${reactorProjects}"/> | |
| <recompressZippedFiles default-value="true"/> | |
| <remoteRepositories default-value="${project.remoteArtifactRepositories}"/> | |
| <runOnlyAtExecutionRoot default-value="false">${assembly.runOnlyAtExecutionRoot}</runOnlyAtExecutionRoot> | |
| <siteDirectory default-value="${project.reporting.outputDirectory}"/> | |
| <skipAssembly default-value="false">${assembly.skipAssembly}</skipAssembly> | |
| <tarLongFileMode default-value="warn">${assembly.tarLongFileMode}</tarLongFileMode> | |
| <tempRoot default-value="${project.build.directory}/archive-tmp"/> | |
| <updateOnly default-value="false">${assembly.updateOnly}</updateOnly> | |
| <useJvmChmod default-value="false">${assembly.useJvmChmod}</useJvmChmod> | |
| <workDirectory default-value="${project.build.directory}/assembly/work"/> | |
| <mavenSession default-value="${session}"/> | |
| <project default-value="${project}"/> | |
| </configuration> | |
| [DEBUG] ----------------------------------------------------------------------- | |
| [DEBUG] Goal: org.apache.maven.plugins:maven-install-plugin:2.4:install (default-install) | |
| [DEBUG] Style: Regular | |
| [DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
| <configuration> | |
| <artifact default-value="${project.artifact}"/> | |
| <attachedArtifacts default-value="${project.attachedArtifacts}"/> | |
| <createChecksum default-value="false">${createChecksum}</createChecksum> | |
| <localRepository>${localRepository}</localRepository> | |
| <packaging default-value="${project.packaging}"/> | |
| <pomFile default-value="${project.file}"/> | |
| <skip default-value="false">${maven.install.skip}</skip> | |
| <updateReleaseInfo default-value="false">${updateReleaseInfo}</updateReleaseInfo> | |
| </configuration> | |
| [DEBUG] ======================================================================= | |
| [DEBUG] Skipped remote update check for org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml, locally installed metadata up-to-date. | |
| [DEBUG] Failure to find org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Failure to find org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Could not find metadata org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
| [DEBUG] Failure to find org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Failure to find org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] Failure to find org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
| [DEBUG] Failure to find org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
| [DEBUG] Skipped remote update check for org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
| [DEBUG] org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
| [DEBUG] org.xml-cml:norma:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:cmine:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:html:jar:0.2-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:svg:jar:0.2-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:euclid:jar:1.1-SNAPSHOT:compile | |
| [DEBUG] log4j:log4j:jar:1.2.16:compile | |
| [DEBUG] org.apache.commons:commons-math:jar:2.2:compile | |
| [DEBUG] joda-time:joda-time:jar:1.6.2:compile | |
| [DEBUG] xom:xom:jar:1.2.5:compile | |
| [DEBUG] xml-apis:xml-apis:jar:1.4.01:compile | |
| [DEBUG] jtidy:jtidy:jar:4aug2000r7-dev:compile | |
| [DEBUG] org.ccil.cowan.tagsoup:tagsoup:jar:1.2:compile | |
| [DEBUG] net.sourceforge.htmlunit:htmlunit:jar:2.15:compile | |
| [DEBUG] xalan:xalan:jar:2.7.1:compile | |
| [DEBUG] xalan:serializer:jar:2.7.1:compile | |
| [DEBUG] commons-collections:commons-collections:jar:3.2.1:compile | |
| [DEBUG] org.apache.commons:commons-lang3:jar:3.3.2:compile | |
| [DEBUG] org.apache.httpcomponents:httpclient:jar:4.3.3:compile | |
| [DEBUG] org.apache.httpcomponents:httpcore:jar:4.3.2:compile | |
| [DEBUG] org.apache.httpcomponents:httpmime:jar:4.3.3:compile | |
| [DEBUG] commons-codec:commons-codec:jar:1.9:compile | |
| [DEBUG] net.sourceforge.htmlunit:htmlunit-core-js:jar:2.15:compile | |
| [DEBUG] xerces:xercesImpl:jar:2.11.0:compile | |
| [DEBUG] net.sourceforge.nekohtml:nekohtml:jar:1.9.21:compile | |
| [DEBUG] net.sourceforge.cssparser:cssparser:jar:0.9.14:compile | |
| [DEBUG] org.w3c.css:sac:jar:1.3:compile | |
| [DEBUG] commons-logging:commons-logging:jar:1.1.3:compile | |
| [DEBUG] org.eclipse.jetty:jetty-websocket:jar:8.1.15.v20140411:compile | |
| [DEBUG] org.eclipse.jetty:jetty-util:jar:8.1.15.v20140411:compile | |
| [DEBUG] org.eclipse.jetty:jetty-io:jar:8.1.15.v20140411:compile | |
| [DEBUG] org.eclipse.jetty:jetty-http:jar:8.1.15.v20140411:compile | |
| [DEBUG] com.google.code.gson:gson:jar:2.3.1:compile | |
| [DEBUG] net.sf.saxon:Saxon-HE:jar:9.6.0-3:compile | |
| [DEBUG] org.xml-cml:svg2xml:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:pdf2svg:jar:1.1-SNAPSHOT:compile | |
| [DEBUG] org.apache.pdfbox:pdfbox:jar:1.8.8:compile | |
| [DEBUG] org.apache.pdfbox:fontbox:jar:1.8.8:compile | |
| [DEBUG] org.apache.pdfbox:jempbox:jar:1.8.8:compile | |
| [DEBUG] org.bouncycastle:bcprov-jdk16:jar:1.46:compile | |
| [DEBUG] org.jsoup:jsoup:jar:1.8.2:compile | |
| [DEBUG] xmlunit:xmlunit:jar:1.4:compile | |
| [DEBUG] org.xml-cml:diagramanalyzer:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:javaocrnew:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.xml-cml:imageanalysis:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] org.boofcv:io:jar:0.17:compile | |
| [DEBUG] org.ddogleg:ddogleg:jar:0.5:compile | |
| [DEBUG] org.boofcv:ip:jar:0.17:compile | |
| [DEBUG] com.thoughtworks.xstream:xstream:jar:1.4.7:compile | |
| [DEBUG] xmlpull:xmlpull:jar:1.1.3.1:compile | |
| [DEBUG] xpp3:xpp3_min:jar:1.1.4c:compile | |
| [DEBUG] org.georegression:georegression:jar:0.6:compile | |
| [DEBUG] com.googlecode.efficient-java-matrix-library:ejml:jar:0.25:compile | |
| [DEBUG] org.boofcv:feature:jar:0.17:compile | |
| [DEBUG] org.boofcv:visualize:jar:0.17:compile | |
| [DEBUG] org.boofcv:recognition:jar:0.17:compile | |
| [DEBUG] org.boofcv:sfm:jar:0.17:compile | |
| [DEBUG] org.boofcv:calibration:jar:0.17:compile | |
| [DEBUG] org.boofcv:geo:jar:0.17:compile | |
| [DEBUG] org.imgscalr:imgscalr-lib:jar:4.2:compile | |
| [DEBUG] org.xml-cml:svgbuilder:jar:0.1-SNAPSHOT:compile | |
| [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.2:compile | |
| [DEBUG] org.apache.lucene:lucene-core:jar:4.10.3:compile | |
| [DEBUG] org.apache.lucene:lucene-analyzers-common:jar:4.10.3:compile | |
| [DEBUG] com.google.guava:guava:jar:18.0:compile | |
| [DEBUG] junit:junit:jar:4.11:test | |
| [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test | |
| [DEBUG] blogspot.software-and-algorithms:stern-library:jar:0.1:compile | |
| [DEBUG] org.vafer:jdeb:jar:1.3:provided | |
| [DEBUG] commons-io:commons-io:jar:2.4:compile | |
| [DEBUG] org.apache.commons:commons-compress:jar:1.7:provided | |
| [DEBUG] org.tukaani:xz:jar:1.4:provided | |
| [DEBUG] org.apache.maven:maven-core:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-model:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-settings:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-settings-builder:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-artifact:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-model-builder:jar:3.2.2:provided | |
| [DEBUG] org.apache.maven:maven-aether-provider:jar:3.2.2:provided | |
| [DEBUG] org.eclipse.aether:aether-spi:jar:0.9.0.M2:provided | |
| [DEBUG] org.eclipse.aether:aether-impl:jar:0.9.0.M2:provided | |
| [DEBUG] org.eclipse.aether:aether-api:jar:0.9.0.M2:provided | |
| [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:provided | |
| [DEBUG] org.eclipse.sisu:org.eclipse.sisu.plexus:jar:0.0.0.M5:provided | |
| [DEBUG] javax.enterprise:cdi-api:jar:1.0:provided | |
| [DEBUG] javax.annotation:jsr250-api:jar:1.0:provided | |
| [DEBUG] javax.inject:javax.inject:jar:1:provided | |
| [DEBUG] org.sonatype.sisu:sisu-guice:jar:no_aop:3.1.0:provided | |
| [DEBUG] aopalliance:aopalliance:jar:1.0:provided | |
| [DEBUG] org.eclipse.sisu:org.eclipse.sisu.inject:jar:0.0.0.M5:provided | |
| [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.19:provided | |
| [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.17:provided | |
| [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.5.1:provided | |
| [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:provided | |
| [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:provided | |
| [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:provided | |
| [DEBUG] org.apache.maven:maven-plugin-api:jar:3.2.2:provided | |
| [DEBUG] org.apache.ant:ant:jar:1.9.3:provided | |
| [DEBUG] org.apache.ant:ant-launcher:jar:1.9.3:provided | |
| [DEBUG] org.bouncycastle:bcpg-jdk15on:jar:1.51:provided | |
| [DEBUG] org.bouncycastle:bcprov-jdk15on:jar:1.51:provided | |
| [DEBUG] com.jayway.jsonpath:json-path:jar:2.0.0:compile | |
| [DEBUG] org.slf4j:slf4j-api:jar:1.7.10:compile | |
| [DEBUG] net.minidev:json-smart:jar:2.1.1:compile | |
| [DEBUG] net.minidev:asm:jar:1.0.2:compile | |
| [DEBUG] asm:asm:jar:3.3.1:compile | |
| [INFO] | |
| [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ ami2 --- | |
| [DEBUG] Created new class realm maven.api | |
| [DEBUG] Importing foreign packages into class realm maven.api | |
| [DEBUG] Imported: org.apache.maven.wagon.events < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.transfer < plexus.core | |
| [DEBUG] Imported: org.apache.maven.exception < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.metadata < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.collection < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.version < plexus.core | |
| [DEBUG] Imported: org.apache.maven.monitor < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core | |
| [DEBUG] Imported: org.apache.maven.repository < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.logging < plexus.core | |
| [DEBUG] Imported: org.apache.maven.profiles < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.repository < plexus.core | |
| [DEBUG] Imported: org.apache.maven.classrealm < plexus.core | |
| [DEBUG] Imported: org.apache.maven.execution < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.artifact < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.spi < plexus.core | |
| [DEBUG] Imported: org.apache.maven.reporting < plexus.core | |
| [DEBUG] Imported: org.apache.maven.usability < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.container < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.component < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core | |
| [DEBUG] Imported: org.apache.maven.lifecycle < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.graph < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.* < plexus.core | |
| [DEBUG] Imported: org.apache.maven.settings < plexus.core | |
| [DEBUG] Imported: org.codehaus.classworlds < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.impl < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.* < plexus.core | |
| [DEBUG] Imported: org.apache.maven.toolchain < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.deployment < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core | |
| [DEBUG] Imported: org.apache.maven.configuration < plexus.core | |
| [DEBUG] Imported: org.apache.maven.cli < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.installation < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.context < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core | |
| [DEBUG] Imported: org.apache.maven.project < plexus.core | |
| [DEBUG] Imported: org.apache.maven.rtinfo < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core | |
| [DEBUG] Imported: org.apache.maven.artifact < plexus.core | |
| [DEBUG] Imported: org.apache.maven.model < plexus.core | |
| [DEBUG] Imported: org.apache.maven.* < plexus.core | |
| [DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core | |
| [DEBUG] Imported: org.sonatype.aether.resolution < plexus.core | |
| [DEBUG] Imported: org.apache.maven.plugin < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.* < plexus.core | |
| [DEBUG] Imported: org.codehaus.plexus.personality < plexus.core | |
| [DEBUG] Populating class realm maven.api | |
| [DEBUG] org.apache.maven.plugins:maven-clean-plugin:jar:2.5: | |
| [DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile | |
| [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0:compile | |
| [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
| [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
| [DEBUG] Imported: < maven.api | |
| [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
| [DEBUG] Included: org.apache.maven.plugins:maven-clean-plugin:jar:2.5 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.6 | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-clean-plugin:2.5:clean from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-clean-plugin:2.5, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-clean-plugin:2.5:clean' with basic configurator --> | |
| [DEBUG] (f) directory = /home/ross/workspace/ami-plugin/target | |
| [DEBUG] (f) excludeDefaultDirectories = false | |
| [DEBUG] (f) failOnError = true | |
| [DEBUG] (f) followSymLinks = false | |
| [DEBUG] (f) outputDirectory = /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] (f) reportDirectory = /home/ross/workspace/ami-plugin/target/site | |
| [DEBUG] (f) retryOnError = true | |
| [DEBUG] (f) skip = false | |
| [DEBUG] (f) testOutputDirectory = /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] -- end configuration -- | |
| [INFO] Deleting /home/ross/workspace/ami-plugin/target | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/fulltext.xml | |
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| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected/word/lengths | |
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| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected/word | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier/clin.isrctn/results.xml | |
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| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier/clin.nct/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier/clin.nct | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier/clin.umin/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier/clin.umin | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected/identifier | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/expected | |
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| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/results.json | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/results/word/frequencies/results.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/results/word/frequencies/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/results/word/frequencies | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/results/word | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1/results | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/fulltext.pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examplestemp1/fulltext.html | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examplestemp1 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/gbif/whale.json | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/gbif | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/1745-6215-16-1-1.gif | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results.json | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results/word/frequencies/results.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results/word/frequencies/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results/word/frequencies | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results/word | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/results | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/fulltext.pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1/fulltext.html | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/examples_16_1_1 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.htm | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.raw.htm | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.web.page.only | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-229.14.188.web.page.complete | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.nodtd.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/plosone | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/pdf/multiple-1471-2148-11-312.pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/pdf/tree-1471-2148-11-313.pdf | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/0004-637X_754_2_85.pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/s2.0-S2212686414000272.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/10.1111_j.1365-2966.2010.17101.x.html | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/AMIArgProcessorTest.class | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/arrowheads.svg | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/lookups/GenbankLookupTest.class | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/lookups/GBIFLookupTest.class | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/lookups/WikipediaLookupTest.class | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/lookups | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results | |
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| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/materials/materials-05-00027-page6.svg | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/materials | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/metadata.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/801626.pdf | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/table.7.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/grouped.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/grouped.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/tagged.xhtml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/table.7.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/fulltext.html | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi | |
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| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/art%3A10.1007%2Fs100529800895.pdf | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep | |
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| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116903/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116903/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116903/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116903 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0119090/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0119090/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0119090/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0119090/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0119090/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0119090/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0119090 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118685/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118685/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118685/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118685/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118685/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118685/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118685 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/word/frequencies/results.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/word/frequencies/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/word/frequencies | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/word | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/genussp/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/genussp | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/binomial/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/binomial | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/genus/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species/genus | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/species | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/clin.isrctn/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/clin.isrctn | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/clin.nct/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/clin.nct | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/bio.ena/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier/bio.ena | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/identifier | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/gene/mouse/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/gene/mouse | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/gene/human/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/gene/human | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/gene | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/expected | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0115544/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0115544 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118692/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118692/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118692/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118692/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118692/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118692/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118692 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116596/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116596/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116596/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116596/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116596/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116596/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116596 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0117956/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0117956/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0117956/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0117956/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0117956/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0117956/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0117956 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118659/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118659/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118659/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118659/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118659/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118659/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118659 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116215/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116215/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0116215/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116215/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116215/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116215/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0116215 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118792/fulltext.xml | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118792/scholarly.html | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/regex10/e0118792/results/regex/consort0/results.xml | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118792/results/regex/consort0 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118792/results/regex | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118792/results | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10/e0118792 | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/regex10 | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000158-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000364-0-002.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000364-0-004.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000174-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000109-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000026-0-000.pbm2.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000257-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000406-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000265-0-000.pbm.png.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/pngs.txt | |
| [INFO] Deleting file /home/ross/workspace/ami-plugin/target/peterijsem/tessclean/ijs.0.000349-0-001.pbm.png.txt | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/peterijsem/tessclean | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target/peterijsem | |
| [INFO] Deleting directory /home/ross/workspace/ami-plugin/target | |
| [DEBUG] Skipping non-existing directory /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] Skipping non-existing directory /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] Skipping non-existing directory /home/ross/workspace/ami-plugin/target/site | |
| [INFO] | |
| [INFO] --- maven-resources-plugin:2.3:resources (default-resources) @ ami2 --- | |
| [DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:2.3: | |
| [DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-project:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-settings:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-profile:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-model:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-artifact:jar:2.0.6:compile | |
| [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile | |
| [DEBUG] junit:junit:jar:3.8.1:compile | |
| [DEBUG] classworlds:classworlds:jar:1.1-alpha-2:compile | |
| [DEBUG] org.codehaus.plexus:plexus-utils:jar:1.5.6:compile | |
| [DEBUG] org.apache.maven.shared:maven-filtering:jar:1.0-beta-2:compile | |
| [DEBUG] org.apache.maven:maven-core:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.0.6:compile | |
| [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7:compile | |
| [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.6:compile | |
| [DEBUG] commons-cli:commons-cli:jar:1.0:compile | |
| [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.6:compile | |
| [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile | |
| [DEBUG] org.apache.maven:maven-monitor:jar:2.0.6:compile | |
| [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.6:compile | |
| [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
| [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
| [DEBUG] Imported: < maven.api | |
| [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
| [DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:2.3 | |
| [DEBUG] Included: junit:junit:jar:3.8.1 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.5.6 | |
| [DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:1.0-beta-2 | |
| [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.0.6 | |
| [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7 | |
| [DEBUG] Included: commons-cli:commons-cli:jar:1.0 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-project:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-settings:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-profile:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-model:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact-manager:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-repository-metadata:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-registry:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact:jar:2.0.6 | |
| [DEBUG] Excluded: org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1 | |
| [DEBUG] Excluded: classworlds:classworlds:jar:1.1-alpha-2 | |
| [DEBUG] Excluded: org.apache.maven:maven-core:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-error-diagnostics:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-descriptor:jar:2.0.6 | |
| [DEBUG] Excluded: org.apache.maven:maven-monitor:jar:2.0.6 | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:2.3:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:2.3, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:2.3:resources' with basic configurator --> | |
| [DEBUG] (f) filters = [] | |
| [DEBUG] (s) includeEmptyDirs = false | |
| [DEBUG] (s) outputDirectory = /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] (s) overwrite = false | |
| [DEBUG] (f) project = MavenProject: org.xml-cml:ami2:0.1-SNAPSHOT @ /home/ross/workspace/ami-plugin/pom.xml | |
| [DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/ross/workspace/ami-plugin/src/main/resources, PatternSet [includes: {}, excludes: {}]}}] | |
| [DEBUG] (f) session = org.apache.maven.execution.MavenSession@5a442a94 | |
| [DEBUG] -- end configuration -- | |
| [DEBUG] properties used {java.vendor=Oracle Corporation, env.IM_CONFIG_PHASE=1, env.LESSOPEN=| /usr/bin/lesspipe %s, env.NVM_BIN=/home/ross/.nvm/v0.10.38/bin, env._LXSESSION_PID=1844, sun.java.launcher=SUN_STANDARD, env.QT_IM_MODULE=ibus, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env._system_arch=x86_64, env.GEM_HOME=/home/ross/.rvm/gems/ruby-2.1.2, os.name=Linux, env.UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1454, sun.boot.class.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/resources.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rt.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/sunrsasign.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jsse.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jce.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/charsets.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rhino.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jfr.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/classes, env.PWD=/home/ross/workspace/ami-plugin, env.LANG=en_GB.UTF-8, java.vm.specification.vendor=Oracle Corporation, env.XDG_MENU_PREFIX=lxde-, java.runtime.version=1.7.0_79-b14, env.MY_RUBY_HOME=/home/ross/.rvm/rubies/ruby-2.1.2, env.GTK_IM_MODULE=xim, env.DEFAULTS_PATH=/usr/share/gconf/Lubuntu.default.path, env.UPSTART_EVENTS=started xsession, env.XDG_VTNR=7, env.DISPLAY=:0, env.rvm_version=1.26.11 (latest), user.name=ross, env.QT4_IM_MODULE=ibus, env._=/usr/bin/mvn, maven.build.version=Apache Maven 3.0.5, env.USER=ross, env.SHELL=/bin/bash, env.DESKTOP_SESSION=Lubuntu, env.XDG_DATA_DIRS=/etc/xdg/lubuntu:/usr/local/share:/usr/share:/usr/share/gdm:/var/lib/menu-xdg:/usr/share/Lubuntu:/usr/local/share/:/usr/share/, env.NODE_PATH=/usr/lib/nodejs:/usr/lib/node_modules:/usr/share/javascript, env._system_type=Linux, env.PATH=/home/ross/.nvm/v0.10.38/bin:/home/ross/.rvm/gems/ruby-2.1.2/bin:/home/ross/.rvm/gems/ruby-2.1.2@global/bin:/home/ross/.rvm/rubies/ruby-2.1.2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/ross/.rvm/bin:/home/ross/.rvm/bin, env.XDG_CURRENT_DESKTOP=LXDE, user.language=en, env.rvm_prefix=/home/ross, env.XDG_SESSION_DESKTOP=Lubuntu, sun.boot.library.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64, classworlds.conf=/usr/share/maven/bin/m2.conf, env.UPSTART_JOB=lxsession, env.rvm_path=/home/ross/.rvm, env.RUBY_VERSION=ruby-2.1.2, java.version=1.7.0_79, user.timezone=, env.DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-0bLxhWcF2N, sun.arch.data.model=64, env._system_name=Ubuntu, java.endorsed.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/endorsed, sun.cpu.isalist=, sun.jnu.encoding=UTF-8, env.rvm_bin_path=/home/ross/.rvm/bin, file.encoding.pkg=sun.io, env.SHLVL=1, file.separator=/, env._system_version=15.04, java.specification.name=Java Platform API Specification, java.class.version=51.0, env.GDMSESSION=Lubuntu, user.country=GB, env.GNOME_KEYRING_PID=, java.home=/usr/lib/jvm/java-7-openjdk-amd64/jre, java.vm.info=mixed mode, env.LOGNAME=ross, os.version=3.19.0-25-generic, env.SAL_USE_VCLPLUGIN=gtk, env.NVM_IOJS_ORG_VERSION_LISTING=https://iojs.org/dist/index.tab, path.separator=:, java.vm.version=24.79-b02, env.UPSTART_INSTANCE=, env.LANGUAGE=en_GB:en, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0, env.QT_QPA_PLATFORMTHEME=lxqt, env.NVM_NODEJS_ORG_MIRROR=https://nodejs.org/dist, env.IRBRC=/home/ross/.rvm/rubies/ruby-2.1.2/.irbrc, env.JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64, env.XDG_SESSION_TYPE=x11, env.SESSIONTYPE=lxsession, env.TERM=xterm, java.awt.printerjob=sun.print.PSPrinterJob, sun.io.unicode.encoding=UnicodeLittle, awt.toolkit=sun.awt.X11.XToolkit, env.XMODIFIERS=@im=ibus, env.QT_PLATFORM_PLUGIN=lxqt, env.MANPATH=/home/ross/.nvm/v0.10.38/share/man:/home/ross/.rvm/rubies/ruby-2.1.2/share/man:/usr/local/man:/usr/local/share/man:/usr/share/man:/home/ross/.rvm/man, env.GEM_PATH=/home/ross/.rvm/gems/ruby-2.1.2:/home/ross/.rvm/gems/ruby-2.1.2@global, env.GDM_LANG=en_GB, user.home=/home/ross, env.JOB=dbus, env.OLDPWD=/home/ross/workspace/ami-plugin, java.specification.vendor=Oracle Corporation, guava.version=18.0, java.vendor.url=http://java.oracle.com/, java.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, env.XDG_SEAT=seat0, java.vm.vendor=Oracle Corporation, java.runtime.name=OpenJDK Runtime Environment, maven.home=/usr/share/maven, java.class.path=/usr/share/maven/boot/plexus-classworlds-2.x.jar, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher clean install -e -X, env.XDG_SESSION_ID=c1, maven.version=3.0.5, java.vm.specification.name=Java Virtual Machine Specification, java.vm.specification.version=1.7, sun.os.patch.level=unknown, sun.cpu.endian=little, env.HOME=/home/ross, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:, java.io.tmpdir=/tmp, env.NVM_PATH=/home/ross/.nvm/v0.10.38/lib/node, java.vendor.url.bug=http://bugreport.sun.com/bugreport/, env.SSH_AUTH_SOCK=/run/user/1000/keyring/ssh, env.XDG_CONFIG_HOME=/home/ross/.config, env.CLUTTER_IM_MODULE=xim, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, os.arch=amd64, env.INSTANCE=, env.XDG_RUNTIME_DIR=/run/user/1000, java.ext.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/ext:/usr/java/packages/lib/ext, env.SESSION=Lubuntu, env.XAUTHORITY=/home/ross/.Xauthority, user.dir=/home/ross/workspace/ami-plugin, env.MANDATORY_PATH=/usr/share/gconf/Lubuntu.mandatory.path, line.separator= | |
| , java.vm.name=OpenJDK 64-Bit Server VM, env.NVM_IOJS_ORG_MIRROR=https://iojs.org/dist, env.XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/ross, file.encoding=UTF-8, env.NVM_DIR=/home/ross/.nvm, env.GPG_AGENT_INFO=/run/user/1000/keyring/gpg:0:1, java.specification.version=1.7, env.GNOME_KEYRING_CONTROL=, env.XDG_CONFIG_DIRS=/etc/xdg/lubuntu:/etc/xdg/xdg-Lubuntu:/usr/share/upstart/xdg:/etc/xdg, env.LESSCLOSE=/usr/bin/lesspipe %s %s} | |
| [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! | |
| [DEBUG] resource with targetPath null | |
| directory /home/ross/workspace/ami-plugin/src/main/resources | |
| excludes [] | |
| includes [] | |
| [INFO] Copying 84 resources | |
| [DEBUG] file documentTagger.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/plosone/documentTagger.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/tagger/plosone/documentTagger.xml | |
| [DEBUG] file documentTagger.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/bmc/documentTagger.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/tagger/bmc/documentTagger.xml | |
| [DEBUG] file documentTagger.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/hindawi/documentTagger.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/tagger/hindawi/documentTagger.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/regex/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/args.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/args.xml | |
| [DEBUG] file am1.dot.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/am1.dot.png to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/am1.dot.png | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/gene/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/args.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/identifier/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/args.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/species/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/args.xml | |
| [DEBUG] file speciesFromLinnaeus.tsv has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/species/speciesFromLinnaeus.tsv to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/speciesFromLinnaeus.tsv | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/simple/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple/args.xml | |
| [DEBUG] file ijsem.old has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsem.old to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsem.old | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/args.xml | |
| [DEBUG] file ijsemNew.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsemNew.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemNew.xml | |
| [DEBUG] file genus.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/genus.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/genus.txt | |
| [DEBUG] file ijsemSpeciesEditor.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsemSpeciesEditor.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemSpeciesEditor.xml | |
| [DEBUG] file binomial.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/binomial.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/binomial.txt | |
| [DEBUG] file ijsem.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsem.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsem.xml | |
| [DEBUG] file ami.dot.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/ami.dot.png to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot.png | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/args.xml | |
| [DEBUG] file stopwords.fr.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.fr.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.fr.txt | |
| [DEBUG] file stopwords.pub.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.pub.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.pub.txt | |
| [DEBUG] file project-information.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/project-information.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/project-information.txt | |
| [DEBUG] file stop-words_hindi_1_hi.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hindi_1_hi.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hindi_1_hi.txt | |
| [DEBUG] file stop-words_hungarian_1_hu.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_1_hu.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_1_hu.txt | |
| [DEBUG] file stop-words_turkish_1_tr.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_1_tr.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_1_tr.txt | |
| [DEBUG] file stop-words_norwegian_1_no.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_1_no.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_1_no.txt | |
| [DEBUG] file stop-words_brazil_1_br.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_brazil_1_br.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_brazil_1_br.txt | |
| [DEBUG] file stop-words_english_4_google_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_4_google_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_4_google_en.txt | |
| [DEBUG] file stop-words_english_5_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_5_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_5_en.txt | |
| [DEBUG] file stop-words_greek_1_el.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_1_el.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_1_el.txt | |
| [DEBUG] file stop-words_hungarian_2_hu.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_2_hu.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_2_hu.txt | |
| [DEBUG] file stop-words_indonesian_1_id.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_indonesian_1_id.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_indonesian_1_id.txt | |
| [DEBUG] file stop-words_french_1_fr.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_1_fr.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_1_fr.txt | |
| [DEBUG] file stop-words_dutch_1_nl.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_1_nl.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_1_nl.txt | |
| [DEBUG] file stop-words_czech_3_cz.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_3_cz.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_3_cz.txt | |
| [DEBUG] file stop-words_german_2_de.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_2_de.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_2_de.txt | |
| [DEBUG] file stop-words_polish_2_pl.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_2_pl.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_2_pl.txt | |
| [DEBUG] file stop-words_romanian_1_ro.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_romanian_1_ro.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_romanian_1_ro.txt | |
| [DEBUG] file stop-words_russian_2_ru.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_2_ru.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_2_ru.txt | |
| [DEBUG] file stop-words_portugese_1_pt.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_1_pt.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_1_pt.txt | |
| [DEBUG] file stop-words_chinese_1_zh.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_chinese_1_zh.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_chinese_1_zh.txt | |
| [DEBUG] file stop-words_swedish_1_sv.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_1_sv.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_1_sv.txt | |
| [DEBUG] file stop-words_norwegian_2_no.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_2_no.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_2_no.txt | |
| [DEBUG] file stop-words_french_2_fr.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_2_fr.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_2_fr.txt | |
| [DEBUG] file stop-words_spanish_2_es.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_2_es.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_2_es.txt | |
| [DEBUG] file stop-words_italian_2_it.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_2_it.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_2_it.txt | |
| [DEBUG] file stop-words_english_2_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_2_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_2_en.txt | |
| [DEBUG] file stop-words_turkish_2_tr.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_2_tr.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_2_tr.txt | |
| [DEBUG] file stop-words_dutch_2_nl.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_2_nl.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_2_nl.txt | |
| [DEBUG] file stop-words_polish_1_pl.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_1_pl.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_1_pl.txt | |
| [DEBUG] file stop-words_catalan_1_ca.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_catalan_1_ca.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_catalan_1_ca.txt | |
| [DEBUG] file stop-words_slovak_1_sk.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_1_sk.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_1_sk.txt | |
| [DEBUG] file stop-words_spanish_1_es.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_1_es.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_1_es.txt | |
| [DEBUG] file stop-words_finnish_1_fi.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_1_fi.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_1_fi.txt | |
| [DEBUG] file stop-words_polish_3_pl.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_3_pl.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_3_pl.txt | |
| [DEBUG] file stop-words_slovak_2_sk.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_2_sk.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_2_sk.txt | |
| [DEBUG] file stop-words_czech_2_cz.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_2_cz.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_2_cz.txt | |
| [DEBUG] file stop-words_swedish_2_sv.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_2_sv.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_2_sv.txt | |
| [DEBUG] file stop-words_english_1_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_1_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_1_en.txt | |
| [DEBUG] file stop-words_czech_1_cz.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_1_cz.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_1_cz.txt | |
| [DEBUG] file stop-words_japanese_1_ja.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_japanese_1_ja.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_japanese_1_ja.txt | |
| [DEBUG] file stop-words_arabic_1_ar.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_1_ar.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_1_ar.txt | |
| [DEBUG] file stop-words_german_1_de.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_1_de.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_1_de.txt | |
| [DEBUG] file stop-words_english_6_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_6_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_6_en.txt | |
| [DEBUG] file stop-words_danish_1_da.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_danish_1_da.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_danish_1_da.txt | |
| [DEBUG] file stop-words_persian_1_fa.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_persian_1_fa.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_persian_1_fa.txt | |
| [DEBUG] file stop-words_italian_1_it.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_1_it.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_1_it.txt | |
| [DEBUG] file stop-words_russian_1_ru.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_1_ru.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_1_ru.txt | |
| [DEBUG] file stop-words_greek_2_el.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_2_el.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_2_el.txt | |
| [DEBUG] file stop-words_finnish_2_fi.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_2_fi.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_2_fi.txt | |
| [DEBUG] file stop-words_arabic_2_ar.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_2_ar.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_2_ar.txt | |
| [DEBUG] file stop-words_bulgarian_1_bg.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_bulgarian_1_bg.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_bulgarian_1_bg.txt | |
| [DEBUG] file stop-words_english_3_en.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_3_en.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_3_en.txt | |
| [DEBUG] file stop-words_portugese_2_pt.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_2_pt.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_2_pt.txt | |
| [DEBUG] file stop-words_latvian_1_lv.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_latvian_1_lv.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_latvian_1_lv.txt | |
| [DEBUG] file stop-words_spanish_es.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words_spanish_es.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words_spanish_es.txt | |
| [DEBUG] file clinicaltrials200.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/clinicaltrials200.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials200.txt | |
| [DEBUG] file stopwords.txt has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.txt to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.txt | |
| [DEBUG] file clinicaltrials.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/clinicaltrials.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/graphchem/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/graphchem/args.xml | |
| [DEBUG] file args.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/sequence/args.xml to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence/args.xml | |
| [DEBUG] file ami.dot has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/ami.dot to /home/ross/workspace/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot | |
| [DEBUG] file log4j.properties has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/main/resources/log4j.properties to /home/ross/workspace/ami-plugin/target/classes/log4j.properties | |
| [INFO] | |
| [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ ami2 --- | |
| [DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:2.5.1: | |
| [DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-artifact:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-core:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-settings:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-profile:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-model:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-project:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-monitor:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-toolchain:jar:1.0:compile | |
| [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0:compile | |
| [DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:1.9.1:compile | |
| [DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:1.9.1:compile | |
| [DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:1.9.1:runtime | |
| [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile | |
| [DEBUG] junit:junit:jar:3.8.1:compile | |
| [DEBUG] classworlds:classworlds:jar:1.1-alpha-2:compile | |
| [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
| [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
| [DEBUG] Imported: < maven.api | |
| [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
| [DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:2.5.1 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:1.9.1 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:1.9.1 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:1.9.1 | |
| [DEBUG] Included: junit:junit:jar:3.8.1 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-core:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-settings:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-profile:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-model:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-repository-metadata:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-error-diagnostics:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-project:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-registry:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-descriptor:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact-manager:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-monitor:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-toolchain:jar:1.0 | |
| [DEBUG] Excluded: org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1 | |
| [DEBUG] Excluded: classworlds:classworlds:jar:1.1-alpha-2 | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile' with basic configurator --> | |
| [DEBUG] (f) basedir = /home/ross/workspace/ami-plugin | |
| [DEBUG] (f) buildDirectory = /home/ross/workspace/ami-plugin/target | |
| [DEBUG] (f) classpathElements = [/home/ross/workspace/ami-plugin/target/classes, /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar, /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar, /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar, /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar, /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar, /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar, /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar, /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar, /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar, /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar, /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar, /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar, /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar, /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar, /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar, /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar, /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar, /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar, /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar, /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar, /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar, /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar, /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar, /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar, /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar, /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar, /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar, /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar, /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar, /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar, /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar, /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar, /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar, /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar, /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar, /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar, /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar, /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar, /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar, /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar, /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar, /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar, /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar, /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar, /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar, /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar, /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar, /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar, /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar, /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar, /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar, /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar, /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar, /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar, /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar, /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar, /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
| [DEBUG] (f) compileSourceRoots = [/home/ross/workspace/ami-plugin/src/main/java] | |
| [DEBUG] (f) compilerId = javac | |
| [DEBUG] (f) debug = true | |
| [DEBUG] (f) failOnError = true | |
| [DEBUG] (f) fork = false | |
| [DEBUG] (f) generatedSourcesDirectory = /home/ross/workspace/ami-plugin/target/generated-sources/annotations | |
| [DEBUG] (f) optimize = false | |
| [DEBUG] (f) outputDirectory = /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] (f) outputFileName = ami2-0.1-SNAPSHOT | |
| [DEBUG] (f) projectArtifact = org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
| [DEBUG] (f) session = org.apache.maven.execution.MavenSession@5a442a94 | |
| [DEBUG] (f) showDeprecation = false | |
| [DEBUG] (f) showWarnings = false | |
| [DEBUG] (f) source = 1.5 | |
| [DEBUG] (f) staleMillis = 0 | |
| [DEBUG] (f) target = 1.5 | |
| [DEBUG] (f) verbose = false | |
| [DEBUG] -- end configuration -- | |
| [DEBUG] Using compiler 'javac'. | |
| [DEBUG] Source directories: [/home/ross/workspace/ami-plugin/src/main/java] | |
| [DEBUG] Classpath: [/home/ross/workspace/ami-plugin/target/classes | |
| /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
| /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
| /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
| /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
| /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
| /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
| /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
| /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
| /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
| /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
| /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
| /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
| /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
| /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
| /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
| /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
| /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
| /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
| /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
| /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
| /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
| /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
| /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
| /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
| /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
| /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
| /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
| /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
| /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
| /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
| /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
| /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
| /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
| /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
| /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
| /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
| /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
| /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
| /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
| /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
| /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
| /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
| /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
| /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
| /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
| /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
| /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
| /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
| /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
| /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
| /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
| /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
| [DEBUG] Output directory: /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] CompilerReuseStrategy: reuseCreated | |
| [DEBUG] Classpath: | |
| [DEBUG] /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
| [DEBUG] /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
| [DEBUG] /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
| [DEBUG] /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
| [DEBUG] /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
| [DEBUG] /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
| [DEBUG] /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
| [DEBUG] /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
| [DEBUG] /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
| [DEBUG] /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar | |
| [DEBUG] Source roots: | |
| [DEBUG] /home/ross/workspace/ami-plugin/src/main/java | |
| [DEBUG] Command line options: | |
| [DEBUG] -d /home/ross/workspace/ami-plugin/target/classes -classpath /home/ross/workspace/ami-plugin/target/classes:/home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar:/home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar:/home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar:/home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar:/home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar:/home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar:/home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar:/home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar:/home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar:/home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar:/home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar:/home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar:/home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar:/home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar:/home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar:/home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar:/home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar:/home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar:/home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar:/home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar:/home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar:/home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar:/home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar:/home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar:/home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar:/home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar:/home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar:/home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar:/home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar:/home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar:/home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar:/home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar:/home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar:/home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar:/home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar:/home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar:/home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar:/home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar:/home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar:/home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar:/home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar:/home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar:/home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar:/home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar:/home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar:/home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar:/home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar:/home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar:/home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar:/home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar:/home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar:/home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar:/home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar:/home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar:/home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar:/home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar:/home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar: -sourcepath /home/ross/workspace/ami-plugin/src/main/java: /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/LineContainer.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeSVGAnalyzer.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlFactory.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTree.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/Names.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GenePlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyResultsElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtu.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTreeNode.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTree.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordCollectionFactory.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/MatcherResult.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/LinneanName.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloConstants.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreePlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloResultsElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GBIFLookup.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedGroupList.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtus.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/CompoundRegex.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GenbankLookup.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/PubmedLookup.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlEdge.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesSearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequencePlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneResultsElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/RunPhylo.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedGroup.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexComponent.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/XPathProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/NameMultimap.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedPattern.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTreeEdge.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/LinneanNamer.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultsElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneSearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexSearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/ENALookup.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIResultElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultsElementList.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNEXML.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMISearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNode.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesResultsElement.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierSearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummySearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/simple/SimplePlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GenbankResultAnalyzer.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTrees.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordSetWrapper.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceSearcher.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/CompoundRegexList.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/simple/SimpleArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneArgProcessor.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIPlugin.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/package-info.java /home/ross/workspace/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/WikipediaLookup.java -g -nowarn -target 1.5 -source 1.5 | |
| [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! | |
| [INFO] Compiling 83 source files to /home/ross/workspace/ami-plugin/target/classes | |
| [INFO] | |
| [INFO] --- maven-resources-plugin:2.3:testResources (default-testResources) @ ami2 --- | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:2.3:testResources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:2.3, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:2.3:testResources' with basic configurator --> | |
| [DEBUG] (f) filters = [] | |
| [DEBUG] (s) includeEmptyDirs = false | |
| [DEBUG] (s) outputDirectory = /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] (s) overwrite = false | |
| [DEBUG] (f) project = MavenProject: org.xml-cml:ami2:0.1-SNAPSHOT @ /home/ross/workspace/ami-plugin/pom.xml | |
| [DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/ross/workspace/ami-plugin/src/test/resources, PatternSet [includes: {}, excludes: {}]}}] | |
| [DEBUG] (f) session = org.apache.maven.execution.MavenSession@5a442a94 | |
| [DEBUG] -- end configuration -- | |
| [DEBUG] properties used {java.vendor=Oracle Corporation, env.IM_CONFIG_PHASE=1, env.LESSOPEN=| /usr/bin/lesspipe %s, env.NVM_BIN=/home/ross/.nvm/v0.10.38/bin, env._LXSESSION_PID=1844, sun.java.launcher=SUN_STANDARD, env.QT_IM_MODULE=ibus, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env._system_arch=x86_64, env.GEM_HOME=/home/ross/.rvm/gems/ruby-2.1.2, os.name=Linux, env.UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1454, sun.boot.class.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/resources.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rt.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/sunrsasign.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jsse.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jce.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/charsets.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rhino.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jfr.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/classes, env.PWD=/home/ross/workspace/ami-plugin, env.LANG=en_GB.UTF-8, java.vm.specification.vendor=Oracle Corporation, env.XDG_MENU_PREFIX=lxde-, java.runtime.version=1.7.0_79-b14, env.MY_RUBY_HOME=/home/ross/.rvm/rubies/ruby-2.1.2, env.GTK_IM_MODULE=xim, env.DEFAULTS_PATH=/usr/share/gconf/Lubuntu.default.path, env.UPSTART_EVENTS=started xsession, env.XDG_VTNR=7, env.DISPLAY=:0, env.rvm_version=1.26.11 (latest), user.name=ross, env.QT4_IM_MODULE=ibus, env._=/usr/bin/mvn, maven.build.version=Apache Maven 3.0.5, env.USER=ross, env.SHELL=/bin/bash, env.DESKTOP_SESSION=Lubuntu, env.XDG_DATA_DIRS=/etc/xdg/lubuntu:/usr/local/share:/usr/share:/usr/share/gdm:/var/lib/menu-xdg:/usr/share/Lubuntu:/usr/local/share/:/usr/share/, env.NODE_PATH=/usr/lib/nodejs:/usr/lib/node_modules:/usr/share/javascript, env._system_type=Linux, env.PATH=/home/ross/.nvm/v0.10.38/bin:/home/ross/.rvm/gems/ruby-2.1.2/bin:/home/ross/.rvm/gems/ruby-2.1.2@global/bin:/home/ross/.rvm/rubies/ruby-2.1.2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/ross/.rvm/bin:/home/ross/.rvm/bin, env.XDG_CURRENT_DESKTOP=LXDE, user.language=en, env.rvm_prefix=/home/ross, env.XDG_SESSION_DESKTOP=Lubuntu, sun.boot.library.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64, classworlds.conf=/usr/share/maven/bin/m2.conf, env.UPSTART_JOB=lxsession, env.rvm_path=/home/ross/.rvm, env.RUBY_VERSION=ruby-2.1.2, java.version=1.7.0_79, user.timezone=, env.DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-0bLxhWcF2N, sun.arch.data.model=64, env._system_name=Ubuntu, java.endorsed.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/endorsed, sun.cpu.isalist=, sun.jnu.encoding=UTF-8, env.rvm_bin_path=/home/ross/.rvm/bin, file.encoding.pkg=sun.io, env.SHLVL=1, file.separator=/, env._system_version=15.04, java.specification.name=Java Platform API Specification, java.class.version=51.0, env.GDMSESSION=Lubuntu, user.country=GB, env.GNOME_KEYRING_PID=, java.home=/usr/lib/jvm/java-7-openjdk-amd64/jre, java.vm.info=mixed mode, env.LOGNAME=ross, os.version=3.19.0-25-generic, env.SAL_USE_VCLPLUGIN=gtk, env.NVM_IOJS_ORG_VERSION_LISTING=https://iojs.org/dist/index.tab, path.separator=:, java.vm.version=24.79-b02, env.UPSTART_INSTANCE=, env.LANGUAGE=en_GB:en, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0, env.QT_QPA_PLATFORMTHEME=lxqt, env.NVM_NODEJS_ORG_MIRROR=https://nodejs.org/dist, env.IRBRC=/home/ross/.rvm/rubies/ruby-2.1.2/.irbrc, env.JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64, env.XDG_SESSION_TYPE=x11, env.SESSIONTYPE=lxsession, env.TERM=xterm, java.awt.printerjob=sun.print.PSPrinterJob, sun.io.unicode.encoding=UnicodeLittle, awt.toolkit=sun.awt.X11.XToolkit, env.XMODIFIERS=@im=ibus, env.QT_PLATFORM_PLUGIN=lxqt, env.MANPATH=/home/ross/.nvm/v0.10.38/share/man:/home/ross/.rvm/rubies/ruby-2.1.2/share/man:/usr/local/man:/usr/local/share/man:/usr/share/man:/home/ross/.rvm/man, env.GEM_PATH=/home/ross/.rvm/gems/ruby-2.1.2:/home/ross/.rvm/gems/ruby-2.1.2@global, env.GDM_LANG=en_GB, user.home=/home/ross, env.JOB=dbus, env.OLDPWD=/home/ross/workspace/ami-plugin, java.specification.vendor=Oracle Corporation, guava.version=18.0, java.vendor.url=http://java.oracle.com/, java.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, env.XDG_SEAT=seat0, java.vm.vendor=Oracle Corporation, java.runtime.name=OpenJDK Runtime Environment, maven.home=/usr/share/maven, java.class.path=/usr/share/maven/boot/plexus-classworlds-2.x.jar, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher clean install -e -X, env.XDG_SESSION_ID=c1, maven.version=3.0.5, java.vm.specification.name=Java Virtual Machine Specification, java.vm.specification.version=1.7, sun.os.patch.level=unknown, sun.cpu.endian=little, env.HOME=/home/ross, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:, java.io.tmpdir=/tmp, env.NVM_PATH=/home/ross/.nvm/v0.10.38/lib/node, java.vendor.url.bug=http://bugreport.sun.com/bugreport/, env.SSH_AUTH_SOCK=/run/user/1000/keyring/ssh, env.XDG_CONFIG_HOME=/home/ross/.config, env.CLUTTER_IM_MODULE=xim, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, os.arch=amd64, env.INSTANCE=, env.XDG_RUNTIME_DIR=/run/user/1000, java.ext.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/ext:/usr/java/packages/lib/ext, env.SESSION=Lubuntu, env.XAUTHORITY=/home/ross/.Xauthority, user.dir=/home/ross/workspace/ami-plugin, env.MANDATORY_PATH=/usr/share/gconf/Lubuntu.mandatory.path, line.separator= | |
| , java.vm.name=OpenJDK 64-Bit Server VM, env.NVM_IOJS_ORG_MIRROR=https://iojs.org/dist, env.XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/ross, file.encoding=UTF-8, env.NVM_DIR=/home/ross/.nvm, env.GPG_AGENT_INFO=/run/user/1000/keyring/gpg:0:1, java.specification.version=1.7, env.GNOME_KEYRING_CONTROL=, env.XDG_CONFIG_DIRS=/etc/xdg/lubuntu:/etc/xdg/xdg-Lubuntu:/usr/share/upstart/xdg:/etc/xdg, env.LESSCLOSE=/usr/bin/lesspipe %s %s} | |
| [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! | |
| [DEBUG] resource with targetPath null | |
| directory /home/ross/workspace/ami-plugin/src/test/resources | |
| excludes [] | |
| includes [] | |
| [INFO] Copying 855 resources | |
| [DEBUG] file tesis_alexv6.5.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/spanish/tesis_alexv6.5.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/spanish/tesis_alexv6.5.pdf | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/BUGS/e0118757/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/BUGS/e0118757/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/BUGS/e0118757/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/BUGS/e0118757/fulltext.xml | |
| [DEBUG] file astro.g.6.2.fig.left.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/figures/astro.g.6.2.fig.left.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/figures/astro.g.6.2.fig.left.svg | |
| [DEBUG] file lineplots.g.10.2.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/figures/lineplots.g.10.2.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/figures/lineplots.g.10.2.svg | |
| [DEBUG] file scatterplot.g.7.2.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/figures/scatterplot.g.7.2.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/figures/scatterplot.g.7.2.svg | |
| [DEBUG] file genbank0.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/regex/genbank0.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/regex/genbank0.xml | |
| [DEBUG] file armbruster.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/regex/armbruster.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/regex/armbruster.html | |
| [DEBUG] file phylotree_small.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/regex/phylotree_small.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/regex/phylotree_small.xml | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/results.json | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/expected/sequence/dna/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/expected/sequence/dna/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/expected/sequence/prot/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/expected/sequence/prot/results.xml | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/plosjournal.pone.0121780_sequence/fulltext.xml | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0119475/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0119475/results.json | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/genus/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/genus/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/binomial/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/binomial/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/genussp/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0119475/expected/species/genussp/results.xml | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0119475/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0119475/fulltext.xml | |
| [DEBUG] file journal.pone.0113556.results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0113556.results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0113556.results.xml | |
| [DEBUG] file journal.pone.0079900.nodtd.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.nodtd.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.nodtd.xml | |
| [DEBUG] file journal.pone.0079900.standalone.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.standalone.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.standalone.xml | |
| [DEBUG] file journal.pone.0077058.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.xml | |
| [DEBUG] file journal.pone.0079900.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0079900.xml | |
| [DEBUG] file journal.pone.0077058.standalone.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.standalone.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.standalone.xml | |
| [DEBUG] file journal.pone.0077058.nodtd.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.nodtd.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/2013-12-11/xml/journal.pone.0077058.nodtd.xml | |
| [DEBUG] file journal.pone.0113556.tagged.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0113556.tagged.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0113556.tagged.xml | |
| [DEBUG] file journal.pone.0113556.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0113556.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0113556.xml | |
| [DEBUG] file journal.pone.0113556.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0113556.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0113556.html | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0008887/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0008887/results.json | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0008887/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0008887/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0008887/expected/gene/human/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0008887/expected/gene/human/results.xml | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0008887/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0008887/fulltext.xml | |
| [DEBUG] file fromnorma.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0115884/fromnorma.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0115884/fromnorma.html | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0115884/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0115884/fulltext.html | |
| [DEBUG] file fulltext.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0115884/fulltext.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0115884/fulltext.pdf | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0115884/results/word/frequencies/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0115884/results/word/frequencies/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/plosone/journal.pone.0115884/results/word/frequencies/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/plosone/journal.pone.0115884/results/word/frequencies/results.html | |
| [DEBUG] file results.json has a filtered file extension | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0117956/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0117956/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0116596/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0116596/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0116596/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0116596/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0118692/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0118692/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0118692/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0118692/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/regex/consort0/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/regex/consort0/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/gene/human/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/gene/human/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/gene/mouse/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/gene/mouse/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/bio.ena/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/bio.ena/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/clin.nct/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/clin.nct/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/clin.isrctn/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/identifier/clin.isrctn/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/genus/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/genus/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/binomial/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/binomial/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/genussp/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/species/genussp/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/word/frequencies/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/word/frequencies/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/word/frequencies/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/expected/word/frequencies/results.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0115544/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0115544/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0118685/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0118685/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0118685/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0118685/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0119090/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0119090/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0119090/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0119090/fulltext.xml | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0116903/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0116903/scholarly.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10/e0116903/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10/e0116903/fulltext.xml | |
| [DEBUG] file plos10.tar has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tutorial/plos10.tar to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tutorial/plos10.tar | |
| [DEBUG] file para.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/chem/oscar/para.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/chem/oscar/para.html | |
| [DEBUG] file jin.html.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/jin.html.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/jin.html.html | |
| [DEBUG] file fseventsd-uuid has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.fseventsd/fseventsd-uuid to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.fseventsd/fseventsd-uuid | |
| [DEBUG] file rats.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/rats.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/rats.png | |
| [DEBUG] file jin.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/jin.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/jin.png | |
| [DEBUG] file rats.html.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/rats.html.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/rats.html.html | |
| [DEBUG] file VolumeConfig.plist has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V1/VolumeConfig.plist to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V1/VolumeConfig.plist | |
| [DEBUG] file live.2.indexTermIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexTermIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexTermIds | |
| [DEBUG] file Cab.created has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Cab.created to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Cab.created | |
| [DEBUG] file live.2.indexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexArrays | |
| [DEBUG] file live.2.shadowIndexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexCompactDirectory | |
| [DEBUG] file live.1.directoryStoreFile has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.directoryStoreFile to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.directoryStoreFile | |
| [DEBUG] file live.3.shadowIndexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexCompactDirectory | |
| [DEBUG] file live.3.indexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexArrays | |
| [DEBUG] file live.3.shadowIndexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexGroups | |
| [DEBUG] file 0.indexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexArrays | |
| [DEBUG] file journalExclusion has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/journalExclusion to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/journalExclusion | |
| [DEBUG] file reverseDirectoryStore has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseDirectoryStore to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseDirectoryStore | |
| [DEBUG] file live.2.indexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexHead | |
| [DEBUG] file live.2.indexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexCompactDirectory | |
| [DEBUG] file live.3.indexUpdates has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexUpdates to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexUpdates | |
| [DEBUG] file live.3.shadowIndexTermIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexTermIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexTermIds | |
| [DEBUG] file live.2.indexPositionTable has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPositionTable to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPositionTable | |
| [DEBUG] file live.1.indexIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexIds | |
| [DEBUG] file live.1.indexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexDirectory | |
| [DEBUG] file store_generation has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store_generation to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store_generation | |
| [DEBUG] file tmp.Cab has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.Cab to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.Cab | |
| [DEBUG] file live.0.directoryStoreFile has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.directoryStoreFile to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.directoryStoreFile | |
| [DEBUG] file live.3.directoryStoreFile.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.directoryStoreFile.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.directoryStoreFile.shadow | |
| [DEBUG] file live.1.indexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexGroups | |
| [DEBUG] file live.2.indexIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexIds | |
| [DEBUG] file live.2.shadowIndexPositionTable has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexPositionTable to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexPositionTable | |
| [DEBUG] file live.1.indexPostings has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexPostings to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexPostings | |
| [DEBUG] file live.3.indexPostings has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPostings to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPostings | |
| [DEBUG] file live.0.indexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexCompactDirectory | |
| [DEBUG] file live.3.indexIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexIds | |
| [DEBUG] file live.2.indexPostings has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPostings to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPostings | |
| [DEBUG] file 0.indexPositions has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPositions to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPositions | |
| [DEBUG] file reverseDirectoryStore.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseDirectoryStore.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseDirectoryStore.shadow | |
| [DEBUG] file live.1.directoryStoreFile.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.directoryStoreFile.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.directoryStoreFile.shadow | |
| [DEBUG] file permStore has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/permStore to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/permStore | |
| [DEBUG] file live.0.indexPostings has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexPostings to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexPostings | |
| [DEBUG] file live.0.indexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexHead | |
| [DEBUG] file 0.indexTermIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexTermIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexTermIds | |
| [DEBUG] file 0.indexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexGroups | |
| [DEBUG] file indexState has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/indexState to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/indexState | |
| [DEBUG] file live.2.indexUpdates has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexUpdates to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexUpdates | |
| [DEBUG] file 0.shadowIndexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.shadowIndexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.shadowIndexHead | |
| [DEBUG] file live.0.indexPositions has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexPositions to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexPositions | |
| [DEBUG] file live.2.directoryStoreFile has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.directoryStoreFile to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.directoryStoreFile | |
| [DEBUG] file live.0.indexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexDirectory | |
| [DEBUG] file live.3.shadowIndexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexArrays | |
| [DEBUG] file tmp.SnowLeopard has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.SnowLeopard to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.SnowLeopard | |
| [DEBUG] file live.2.indexPositions has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPositions to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexPositions | |
| [DEBUG] file live.2.shadowIndexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexDirectory | |
| [DEBUG] file live.3.shadowIndexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexDirectory | |
| [DEBUG] file live.2.shadowIndexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexHead | |
| [DEBUG] file retire.10 has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/journals.scan/retire.10 to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/journals.scan/retire.10 | |
| [DEBUG] file live.1.indexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexArrays | |
| [DEBUG] file live.0.shadowIndexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.shadowIndexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.shadowIndexGroups | |
| [DEBUG] file reverseStore.updates has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseStore.updates to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/reverseStore.updates | |
| [DEBUG] file live.1.shadowIndexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.shadowIndexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.shadowIndexGroups | |
| [DEBUG] file tmp.Lion has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.Lion to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.Lion | |
| [DEBUG] file live.0.indexIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexIds | |
| [DEBUG] file live.2.indexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexGroups | |
| [DEBUG] file 0.directoryStoreFile has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.directoryStoreFile to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.directoryStoreFile | |
| [DEBUG] file 0.indexUpdates has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexUpdates to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexUpdates | |
| [DEBUG] file live.2.shadowIndexTermIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexTermIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexTermIds | |
| [DEBUG] file live.3.indexPositions has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPositions to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPositions | |
| [DEBUG] file 0.indexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexHead | |
| [DEBUG] file live.3.shadowIndexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexHead | |
| [DEBUG] file live.2.shadowIndexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexGroups | |
| [DEBUG] file live.0.directoryStoreFile.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.directoryStoreFile.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.directoryStoreFile.shadow | |
| [DEBUG] file live.3.indexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexHead | |
| [DEBUG] file live.3.shadowIndexPositionTable has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexPositionTable to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.shadowIndexPositionTable | |
| [DEBUG] file shutdown_time has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/shutdown_time to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/shutdown_time | |
| [DEBUG] file live.3.indexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexDirectory | |
| [DEBUG] file live.3.indexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexCompactDirectory | |
| [DEBUG] file 0.indexPostings has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPostings to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPostings | |
| [DEBUG] file 0.indexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexCompactDirectory | |
| [DEBUG] file live.3.directoryStoreFile has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.directoryStoreFile to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.directoryStoreFile | |
| [DEBUG] file live.2.shadowIndexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.shadowIndexArrays | |
| [DEBUG] file live.0.shadowIndexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.shadowIndexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.shadowIndexHead | |
| [DEBUG] file live.2.indexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.indexDirectory | |
| [DEBUG] file live.0.indexArrays has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexArrays to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexArrays | |
| [DEBUG] file tmp.spotlight.state has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.spotlight.state to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.spotlight.state | |
| [DEBUG] file 0.indexDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexDirectory | |
| [DEBUG] file live.1.shadowIndexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.shadowIndexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.shadowIndexHead | |
| [DEBUG] file live.3.indexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexGroups | |
| [DEBUG] file live.1.indexPositions has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexPositions to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexPositions | |
| [DEBUG] file store.updates has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store.updates to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store.updates | |
| [DEBUG] file Lion.created has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Lion.created to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Lion.created | |
| [DEBUG] file Cab.modified has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Cab.modified to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/Cab.modified | |
| [DEBUG] file .store.db has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/.store.db to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/.store.db | |
| [DEBUG] file live.2.directoryStoreFile.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.directoryStoreFile.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.2.directoryStoreFile.shadow | |
| [DEBUG] file store.db has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store.db to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/store.db | |
| [DEBUG] file 0.shadowIndexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.shadowIndexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.shadowIndexGroups | |
| [DEBUG] file live.1.indexCompactDirectory has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexCompactDirectory to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexCompactDirectory | |
| [DEBUG] file tmp.spotlight.loc has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.spotlight.loc to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/tmp.spotlight.loc | |
| [DEBUG] file live.1.indexHead has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexHead to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.1.indexHead | |
| [DEBUG] file live.0.indexGroups has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexGroups to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.0.indexGroups | |
| [DEBUG] file live.3.indexTermIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexTermIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexTermIds | |
| [DEBUG] file live.3.indexPositionTable has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPositionTable to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/live.3.indexPositionTable | |
| [DEBUG] file 0.indexIds has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexIds to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexIds | |
| [DEBUG] file psid.db has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/psid.db to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/psid.db | |
| [DEBUG] file 0.directoryStoreFile.shadow has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.directoryStoreFile.shadow to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.directoryStoreFile.shadow | |
| [DEBUG] file 0.indexPositionTable has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPositionTable to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/Store-V2/0D5B4C83-EF7A-4B21-9408-497F6A104170/0.indexPositionTable | |
| [DEBUG] file VolumeConfiguration.plist has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/edinburgh/.Spotlight-V100/VolumeConfiguration.plist to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/edinburgh/.Spotlight-V100/VolumeConfiguration.plist | |
| [DEBUG] file pumas.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/plosone/pumas.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/plosone/pumas.html | |
| [DEBUG] file 1471-2148-11-312.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/1471-2148-11-312.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/1471-2148-11-312.html | |
| [DEBUG] file 1471-2148-11-312.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/1471-2148-11-312.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/1471-2148-11-312.xml | |
| [DEBUG] file ijs.005942.htm has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/ijs.005942.htm to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/ijs.005942.htm | |
| [DEBUG] file passerines.313.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/passerines.313.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/passerines.313.html | |
| [DEBUG] file journal.pone.0077058.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/journal.pone.0077058.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/journal.pone.0077058.xml | |
| [DEBUG] file journal.pone.0080888.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080888.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080888.xml | |
| [DEBUG] file journal.pone.0082370.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082370.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082370.xml | |
| [DEBUG] file journal.pone.0083725.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083725.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083725.xml | |
| [DEBUG] file journal.pone.0080850.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080850.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080850.xml | |
| [DEBUG] file journal.pone.0010894.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0010894.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0010894.xml | |
| [DEBUG] file journal.pone.0069841.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0069841.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0069841.xml | |
| [DEBUG] file journal.pone.0082388.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082388.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082388.xml | |
| [DEBUG] file journal.pone.0082038.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082038.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082038.xml | |
| [DEBUG] file journal.pone.0080763.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080763.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080763.xml | |
| [DEBUG] file journal.pone.0080561.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080561.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080561.xml | |
| [DEBUG] file journal.pone.0084211.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0084211.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0084211.xml | |
| [DEBUG] file journal.pone.0082706.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082706.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082706.xml | |
| [DEBUG] file journal.pone.0080560.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080560.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080560.xml | |
| [DEBUG] file journal.pone.0080974.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080974.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080974.xml | |
| [DEBUG] file journal.pone.0080778.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080778.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080778.xml | |
| [DEBUG] file journal.pone.0081381.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081381.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081381.xml | |
| [DEBUG] file journal.pone.0081414.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081414.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081414.xml | |
| [DEBUG] file journal.pone.0081648.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081648.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081648.xml | |
| [DEBUG] file journal.pone.0083945.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083945.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083945.xml | |
| [DEBUG] file journal.pone.0113556.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0113556.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0113556.xml | |
| [DEBUG] file journal.pone.0079889.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0079889.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0079889.xml | |
| [DEBUG] file journal.pone.0080821.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080821.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080821.xml | |
| [DEBUG] file journal.pone.0079342.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0079342.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0079342.xml | |
| [DEBUG] file journal.pone.0080872.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080872.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080872.xml | |
| [DEBUG] file journal.pone.0077058.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0077058.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0077058.xml | |
| [DEBUG] file journal.pone.0080803.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080803.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080803.xml | |
| [DEBUG] file journal.pone.0082448.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082448.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082448.xml | |
| [DEBUG] file journal.pone.0079900.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0079900.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0079900.xml | |
| [DEBUG] file journal.pone.0082037.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082037.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082037.xml | |
| [DEBUG] file journal.pone.0082071.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082071.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082071.xml | |
| [DEBUG] file journal.pone.0081425.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081425.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081425.xml | |
| [DEBUG] file journal.pone.0080918.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080918.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080918.xml | |
| [DEBUG] file journal.pone.0081490.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081490.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081490.xml | |
| [DEBUG] file journal.pone.0078871.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0078871.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0078871.xml | |
| [DEBUG] file journal.pone.0083678.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083678.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083678.xml | |
| [DEBUG] file journal.pone.0081943.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081943.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081943.xml | |
| [DEBUG] file journal.pone.0083690.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083690.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083690.xml | |
| [DEBUG] file journal.pone.0082100.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082100.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082100.xml | |
| [DEBUG] file journal.pone.0084220.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0084220.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0084220.xml | |
| [DEBUG] file journal.pone.0080783.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080783.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080783.xml | |
| [DEBUG] file journal.pone.0080616.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080616.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080616.xml | |
| [DEBUG] file journal.pone.0082213.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082213.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082213.xml | |
| [DEBUG] file journal.pone.0080563.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080563.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080563.xml | |
| [DEBUG] file journal.pone.0083843.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083843.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083843.xml | |
| [DEBUG] file journal.pone.0073791.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0073791.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0073791.xml | |
| [DEBUG] file journal.pone.0080719.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080719.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080719.xml | |
| [DEBUG] file journal.pone.0083836.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0083836.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0083836.xml | |
| [DEBUG] file journal.pone.0081388.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0081388.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0081388.xml | |
| [DEBUG] file journal.pone.0080978.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0080978.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0080978.xml | |
| [DEBUG] file journal.pone.0066075.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0066075.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0066075.xml | |
| [DEBUG] file journal.pone.0082451.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/many/journal.pone.0082451.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/many/journal.pone.0082451.xml | |
| [DEBUG] file multiple.species.312.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/multiple.species.312.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/multiple.species.312.html | |
| [DEBUG] file journal.pone.0081580.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/bad/journal.pone.0081580.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/bad/journal.pone.0081580.xml | |
| [DEBUG] file journal.pone.0082047.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/species/bad/journal.pone.0082047.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/species/bad/journal.pone.0082047.xml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.html | |
| [DEBUG] file fulltext.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.pdf | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/results.json | |
| [DEBUG] file 1745-6215-16-1-1.gif has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/1745-6215-16-1-1.gif to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/1745-6215-16-1-1.gif | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.umin/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.umin/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.nct/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.nct/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.isrctn/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/identifier/clin.isrctn/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/frequencies/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/frequencies/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/frequencies/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/frequencies/results.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/lengths/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/lengths/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/lengths/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/expected/word/lengths/results.html | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1a/fulltext.xml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/fulltext.html | |
| [DEBUG] file fulltext.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/fulltext.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/fulltext.pdf | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/results.json | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/expected/regex/consort0/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/expected/regex/consort0/results.xml | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/15_1_511/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/15_1_511/fulltext.xml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/fulltext.html | |
| [DEBUG] file fulltext.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/fulltext.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/fulltext.pdf | |
| [DEBUG] file results.json has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/results.json to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/results.json | |
| [DEBUG] file 1745-6215-16-1-1.gif has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/1745-6215-16-1-1.gif to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/1745-6215-16-1-1.gif | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/scholarly.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/identifier/clin.nct/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/identifier/clin.nct/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/identifier/clin.isrctn/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/identifier/clin.isrctn/results.xml | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/frequencies/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/frequencies/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/frequencies/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/frequencies/results.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/lengths/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/bmc/http_www.trialsjournal.com_content_16_1_1/expected/word/lengths/results.xml | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000695-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000695-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002048-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002048-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000851-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000851-0-002.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001693-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001693-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003368-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003368-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000935-0-005.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000935-0-005.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002683-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002683-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001685-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001685-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002642-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002642-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003434-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003434-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001966-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001966-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003400-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003400-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003723-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003723-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003566-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003566-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003152-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003152-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003376-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003376-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003046-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003046-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002576-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002576-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001909-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001909-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003160-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003160-0-002.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002881-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002881-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001800-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001800-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003327-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003327-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000257-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000257-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002287-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002287-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002394-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002394-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001230-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001230-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003640-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003640-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003087-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003087-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001743-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001743-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001990-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001990-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003541-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003541-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001958-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001958-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000620-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000620-0-002.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002691-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002691-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000174-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000174-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003061-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003061-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001248-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001248-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002295-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002295-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000158-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000158-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002113-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002113-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002725-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002725-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000349-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000349-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-005.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-005.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000364-0-004.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000364-0-004.pbm_test.nwk | |
| [DEBUG] file ijs.0.003327-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003327-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003327-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000521-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000521-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001123-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001123-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002592-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002592-0-000.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001784-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001784-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000984-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000984-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000984-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002907-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002907-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002907-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001180-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001180-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001800-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001800-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001800-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003244-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003244-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003145-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003145-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003145-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002915-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002915-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002915-0-001.pbm_test.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001420-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001420-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000547-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000547-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000547-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003459-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003459-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003459-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.000737-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000737-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000737-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003228-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003228-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003228-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.000265-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000265-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000265-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000760-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000760-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000760-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003053-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003053-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003053-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000588-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000588-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000588-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003731-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003731-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003731-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.001651-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001651-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001651-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.002899-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002899-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002899-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000117-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000117-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000117-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002519-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002519-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002519-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001461-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001461-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001461-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000489-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000489-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000489-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003293-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003293-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003293-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002808-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002808-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002808-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.000943-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000943-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000943-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003251-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003251-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003251-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001503-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001503-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001503-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002618-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002618-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002618-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003509-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003509-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003509-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.002048-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002048-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002048-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003814-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003814-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003814-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.000497-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000497-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000497-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.001529-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001529-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001529-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003749-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003749-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003749-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002741-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002741-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002741-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002816-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002816-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002816-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.001768-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001768-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001768-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.002915-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002915-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002915-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001362-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001362-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001362-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.003699-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003699-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003699-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003624-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003624-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003624-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.002626-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002626-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002626-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001172-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001172-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001172-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003160-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003160-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003160-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.001149-0-004.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-004.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-004.pbm_test.nwk | |
| [DEBUG] file ijs.0.002766-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002766-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002766-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000802-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000802-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000802-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.002477-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002477-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002477-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001826-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001826-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001826-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000984-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000984-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000984-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003384-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003384-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003384-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001537-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001537-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001537-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.001172-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001172-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001172-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000364-0-002.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000364-0-002.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000364-0-002.pbm_test.nwk | |
| [DEBUG] file ijs.0.003269-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003269-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003269-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001552-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001552-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001552-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001123-0-003.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001123-0-003.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001123-0-003.pbm_test.nwk | |
| [DEBUG] file ijs.0.000109-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000109-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000109-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000737-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000737-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000737-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001925-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001925-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001925-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001719-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001719-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001719-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.002287-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.002287-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.002287-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.001479-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001479-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001479-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.003210-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003210-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003210-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003087-0-001.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003087-0-001.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003087-0-001.pbm_test.nwk | |
| [DEBUG] file ijs.0.001149-0-003.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-003.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001149-0-003.pbm_test.nwk | |
| [DEBUG] file ijs.0.001792-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.001792-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.001792-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000406-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000406-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000406-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.000901-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.000901-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.000901-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.003285-0-000.pbm_test.nwk has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/treeresult/ijs.0.003285-0-000.pbm_test.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/treeresult/ijs.0.003285-0-000.pbm_test.nwk | |
| [DEBUG] file ijs.0.014126-0-000.pbm.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/tree/ijs.0.014126-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/tree/ijs.0.014126-0-000.pbm.png | |
| [DEBUG] file fulltext.xhtml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1196402_html/fulltext.xhtml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1196402_html/fulltext.xhtml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1196402_html/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1196402_html/fulltext.html | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1196402_html/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1196402_html/scholarly.html | |
| [DEBUG] file fulltext.xhtml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1320344_html/fulltext.xhtml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1320344_html/fulltext.xhtml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1320344_html/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1320344_html/fulltext.html | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1320344_html/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1320344_html/scholarly.html | |
| [DEBUG] file fulltext.xhtml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1542681_html/fulltext.xhtml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1542681_html/fulltext.xhtml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1542681_html/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1542681_html/fulltext.html | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/ieee/1542681_html/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/ieee/1542681_html/scholarly.html | |
| [DEBUG] file image.g.2.10.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/graphchem/aspergillus_9/svg/image.g.2.10.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/graphchem/aspergillus_9/svg/image.g.2.10.svg | |
| [DEBUG] file ijs.0.000745-0-000.pbm.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.000745-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.000745-0-000.pbm.png | |
| [DEBUG] file ijs.0.011569-0-000.pbm.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.011569-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.011569-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.007674-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.007674-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.008789-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.008789-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.000364-0-003.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.000364-0-003.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.002899-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.002899-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.008268-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.008268-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.003368-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.003368-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.003434-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.003434-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.007336-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.007336-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.006643-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.006643-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.015479-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.015479-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.013250-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.013250-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.007591-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.007591-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.008607-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.008607-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.004614-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.004614-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.011395-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.011395-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.010470-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.010470-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.000364-0-004.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.000364-0-004.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.009308-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.009308-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.012179-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.012179-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.010801-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.010801-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.015602-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.015602-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.007401-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.007401-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.009308-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.009308-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.003145-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.003145-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/50images/ijs.0.002337-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/50images/ijs.0.002337-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/lookup.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/lookup.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems/ijs.0.65219-0-002.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems/ijs.0.65219-0-002.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems/ijs.0.65219-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems/ijs.0.65219-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64970-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64970-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64952-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64952-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64950-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64950-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64938-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64938-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64980-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64980-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/problems1/ijs.0.64969-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/problems1/ijs.0.64969-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000174_0/image/000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000174_0/image/000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000174_0/image/000.pbm.png.hocr.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000174_0/image/000.pbm.png.hocr.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/factory/testfactory1.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/factory/testfactory1.xml | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/factory/testfactory.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/factory/testfactory.xml | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000265_0/image/000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000265_0/image/000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000265_0/image/000.pbm.png.hocr.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000265_0/image/000.pbm.png.hocr.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/newick.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/newick.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.hocr.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.hocr.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.nwk to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.nwk | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.nexml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.nexml | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/ijs_0_000364_0/image/003.pbm.png.phylotree.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002469-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002469-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000174-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000174-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001420-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001420-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001966-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001966-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002220-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002220-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001537-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001537-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000406-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000406-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002444-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002444-0-000.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.003228-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.003228-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001362-0-002.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.001362-0-002.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000364-0-004.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.000364-0-004.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002618-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002618-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.003723-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.003723-0-000.pbm.png | |
| [DEBUG] file ijs.0.002048-0-001.pbm.png has a non filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002048-0-001.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002048-0-001.pbm.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002113-0-000.pbm.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/phylo/15goodtree/ijs.0.002113-0-000.pbm.png | |
| [DEBUG] file art%3A10.1007%2Fs100529800895.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/art%3A10.1007%2Fs100529800895.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/art%3A10.1007%2Fs100529800895.pdf | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page10.clipPath12.contents.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page10.clipPath12.contents.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page2.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page2.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page15.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page15.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page10.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page10.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page8.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page8.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page23.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page23.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page8declip.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page8declip.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1.pdf | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page12.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page12.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page9.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page9.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page24.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page24.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page22.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page22.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page7.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page7.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page20.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page20.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page5.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page5.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page4.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page4.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page18.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page18.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page14.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page14.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page6.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page6.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page17.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page17.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page13.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page13.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page19.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page19.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page9declip.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page9declip.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/result.png to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/result.png | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page11.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page11.svg | |
| [DEBUG] file hep1-page1.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page1.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page1.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page16.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page16.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page3.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page3.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page21.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page21.svg | |
| [DEBUG] file hep1-page7declip.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep1/hep1-page7declip.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep1/hep1-page7declip.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/33.1.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/33.1.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/fulltext-page17.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/fulltext-page17.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hep/hep.image.g.33.1.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hep/hep.image.g.33.1.svg | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/fulltext.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/table.7.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/table.7.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/tagged.xhtml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/tagged.xhtml | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/grouped.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/grouped.html | |
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| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/grouped.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/grouped.xml | |
| [DEBUG] file table.7.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/table.7.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/table.7.xml | |
| [DEBUG] file fulltext.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/247835/fulltext.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/247835/fulltext.xml | |
| [DEBUG] file 801626.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/801626.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/801626.pdf | |
| [DEBUG] file metadata.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/hindawi/metadata.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/hindawi/metadata.xml | |
| [DEBUG] file materials-05-00027-page6.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/materials/materials-05-00027-page6.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/materials/materials-05-00027-page6.svg | |
| [DEBUG] file fulltext.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/01268283/fulltext.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/01268283/fulltext.pdf | |
| [DEBUG] file fulltext.xhtml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/ieee_1196402_html/fulltext.xhtml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/fulltext.xhtml | |
| [DEBUG] file fulltext.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/ieee_1196402_html/fulltext.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/fulltext.html | |
| [DEBUG] file results.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.xml | |
| [DEBUG] file results.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/results/word/frequencies/results.html | |
| [DEBUG] file scholarly.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/engineering/ieee_1196402_html/scholarly.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/engineering/ieee_1196402_html/scholarly.html | |
| [DEBUG] file arrowheads.svg has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/arrowheads.svg to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/arrowheads.svg | |
| [DEBUG] file 10.1111_j.1365-2966.2010.17101.x.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/astrophys/10.1111_j.1365-2966.2010.17101.x.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/10.1111_j.1365-2966.2010.17101.x.html | |
| [DEBUG] file s2.0-S2212686414000272.html has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/astrophys/s2.0-S2212686414000272.html to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/s2.0-S2212686414000272.html | |
| [DEBUG] file 0004-637X_754_2_85.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/astrophys/0004-637X_754_2_85.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/astrophys/0004-637X_754_2_85.pdf | |
| [DEBUG] file tree-1471-2148-11-313.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/pdf/tree-1471-2148-11-313.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/pdf/tree-1471-2148-11-313.pdf | |
| [DEBUG] file multiple-1471-2148-11-312.pdf has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/pdf/multiple-1471-2148-11-312.pdf to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/pdf/multiple-1471-2148-11-312.pdf | |
| [DEBUG] file journal.pone.0112055.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.xml | |
| [DEBUG] file journal.pone.0112055.nodtd.xml has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.nodtd.xml to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/plosone/journal.pone.0112055.nodtd.xml | |
| [DEBUG] file 1471-229.14.188.web.page.complete has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/bmc/1471-229.14.188.web.page.complete to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-229.14.188.web.page.complete | |
| [DEBUG] file 1471-2229.14.188.web.page.only has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.web.page.only to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.web.page.only | |
| [DEBUG] file 1471-2229.14.188.raw.htm has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.raw.htm to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.raw.htm | |
| [DEBUG] file 1471-2229.14.188.htm has a filtered file extension | |
| [DEBUG] copy /home/ross/workspace/ami-plugin/src/test/resources/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.htm to /home/ross/workspace/ami-plugin/target/test-classes/org/xmlcml/ami2/sections/bmc/1471-2229.14.188.htm | |
| [INFO] | |
| [INFO] --- maven-compiler-plugin:2.5.1:testCompile (default-testCompile) @ ami2 --- | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:2.5.1:testCompile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:2.5.1:testCompile' with basic configurator --> | |
| [DEBUG] (f) basedir = /home/ross/workspace/ami-plugin | |
| [DEBUG] (f) buildDirectory = /home/ross/workspace/ami-plugin/target | |
| [DEBUG] (f) classpathElements = [/home/ross/workspace/ami-plugin/target/test-classes, /home/ross/workspace/ami-plugin/target/classes, /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar, /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar, /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar, /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar, /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar, /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar, /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar, /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar, /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar, /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar, /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar, /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar, /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar, /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar, /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar, /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar, /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar, /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar, /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar, /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar, /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar, /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar, /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar, /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar, /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar, /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar, /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar, /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar, /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar, /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar, /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar, /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar, /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar, /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar, /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar, /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar, /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar, /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar, /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar, /home/ross/.m2/repository/junit/junit/4.11/junit-4.11.jar, /home/ross/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar, /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar, /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar, /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar, /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar, /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar, /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar, /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar, /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar, /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar, /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar, /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar, /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar, /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar, /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar, /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar, /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar, /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar, /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
| [DEBUG] (f) compileSourceRoots = [/home/ross/workspace/ami-plugin/src/test/java] | |
| [DEBUG] (f) compilerId = javac | |
| [DEBUG] (f) debug = true | |
| [DEBUG] (f) failOnError = true | |
| [DEBUG] (f) fork = false | |
| [DEBUG] (f) generatedTestSourcesDirectory = /home/ross/workspace/ami-plugin/target/generated-test-sources/test-annotations | |
| [DEBUG] (f) optimize = false | |
| [DEBUG] (f) outputDirectory = /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] (f) outputFileName = ami2-0.1-SNAPSHOT | |
| [DEBUG] (f) session = org.apache.maven.execution.MavenSession@5a442a94 | |
| [DEBUG] (f) showDeprecation = false | |
| [DEBUG] (f) showWarnings = false | |
| [DEBUG] (f) source = 1.5 | |
| [DEBUG] (f) staleMillis = 0 | |
| [DEBUG] (f) target = 1.5 | |
| [DEBUG] (f) verbose = false | |
| [DEBUG] -- end configuration -- | |
| [DEBUG] Using compiler 'javac'. | |
| [DEBUG] Source directories: [/home/ross/workspace/ami-plugin/src/test/java] | |
| [DEBUG] Classpath: [/home/ross/workspace/ami-plugin/target/test-classes | |
| /home/ross/workspace/ami-plugin/target/classes | |
| /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
| /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
| /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
| /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
| /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
| /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
| /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
| /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
| /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
| /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
| /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
| /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
| /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
| /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
| /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
| /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
| /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
| /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
| /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
| /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
| /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
| /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
| /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
| /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
| /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
| /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
| /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
| /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
| /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
| /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
| /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
| /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
| /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
| /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
| /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
| /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
| /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
| /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
| /home/ross/.m2/repository/junit/junit/4.11/junit-4.11.jar | |
| /home/ross/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar | |
| /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
| /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
| /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
| /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
| /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
| /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
| /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
| /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
| /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
| /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
| /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
| /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
| /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
| /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
| /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
| /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
| /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
| /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
| /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
| /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
| /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
| /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
| /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
| /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
| [DEBUG] Output directory: /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] CompilerReuseStrategy: reuseCreated | |
| [DEBUG] Classpath: | |
| [DEBUG] /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
| [DEBUG] /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
| [DEBUG] /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
| [DEBUG] /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
| [DEBUG] /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
| [DEBUG] /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
| [DEBUG] /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
| [DEBUG] /home/ross/.m2/repository/junit/junit/4.11/junit-4.11.jar | |
| [DEBUG] /home/ross/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
| [DEBUG] /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
| [DEBUG] /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar | |
| [DEBUG] Source roots: | |
| [DEBUG] /home/ross/workspace/ami-plugin/src/test/java | |
| [DEBUG] Command line options: | |
| [DEBUG] -d /home/ross/workspace/ami-plugin/target/test-classes -classpath /home/ross/workspace/ami-plugin/target/test-classes:/home/ross/workspace/ami-plugin/target/classes:/home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar:/home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar:/home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar:/home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar:/home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar:/home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar:/home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar:/home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar:/home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar:/home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar:/home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar:/home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar:/home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar:/home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar:/home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar:/home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar:/home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar:/home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar:/home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar:/home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar:/home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar:/home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar:/home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar:/home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar:/home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar:/home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar:/home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar:/home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar:/home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar:/home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar:/home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar:/home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar:/home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar:/home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar:/home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar:/home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar:/home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar:/home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar:/home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar:/home/ross/.m2/repository/junit/junit/4.11/junit-4.11.jar:/home/ross/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar:/home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar:/home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar:/home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar:/home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar:/home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar:/home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar:/home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar:/home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar:/home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar:/home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar:/home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar:/home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar:/home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar:/home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar:/home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar:/home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar:/home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar:/home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar: -sourcepath /home/ross/workspace/ami-plugin/src/test/java: /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/word/Prototype.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/LongRunningTests.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/AMIArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/simple/SimplePluginTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/AMIFixtures.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/RegressionDemoTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/species/SpeciesArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/MergeTipTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/gene/GeneArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/HOCRPhyloTreeTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/species/NameMultimapTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/word/DigramTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/misc/HEPTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/ClinicalTrialsDemo.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/sequence/SequenceArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/word/WordTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/lookups/GenbankLookupTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/eng/EngTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/PhyloArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/TutorialTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/word/TesseractTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/Prototypes.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/StringsTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/lookups/WikipediaLookupTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/regex/RegexPluginTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/lookups/GBIFLookupTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/AMIPluginTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/identifiers/IdentifierArgProcessorTest.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/word/NGramGenerator.java /home/ross/workspace/ami-plugin/src/test/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlFactoryTest.java -g -nowarn -target 1.5 -source 1.5 | |
| [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! | |
| [INFO] Compiling 31 source files to /home/ross/workspace/ami-plugin/target/test-classes | |
| [INFO] | |
| [INFO] --- maven-surefire-plugin:2.10:test (default-test) @ ami2 --- | |
| [DEBUG] org.apache.maven.plugins:maven-surefire-plugin:jar:2.10: | |
| [DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven.surefire:surefire-booter:jar:2.10:compile | |
| [DEBUG] org.apache.maven.surefire:surefire-api:jar:2.10:compile | |
| [DEBUG] org.apache.maven.surefire:maven-surefire-common:jar:2.10:compile | |
| [DEBUG] org.apache.maven.shared:maven-common-artifact-filters:jar:1.3:compile | |
| [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.1:compile | |
| [DEBUG] org.apache.maven:maven-artifact:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-project:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-settings:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-profile:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-model:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.9:compile | |
| [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile | |
| [DEBUG] junit:junit:jar:3.8.1:test (scope managed from compile) | |
| [DEBUG] org.apache.maven:maven-core:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.9:compile | |
| [DEBUG] org.apache.maven:maven-monitor:jar:2.0.9:compile | |
| [DEBUG] classworlds:classworlds:jar:1.1:compile | |
| [DEBUG] org.apache.maven:maven-toolchain:jar:2.0.9:compile | |
| [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.10 | |
| [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.10 | |
| [DEBUG] Imported: < maven.api | |
| [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.10 | |
| [DEBUG] Included: org.apache.maven.plugins:maven-surefire-plugin:jar:2.10 | |
| [DEBUG] Included: org.apache.maven.surefire:surefire-booter:jar:2.10 | |
| [DEBUG] Included: org.apache.maven.surefire:surefire-api:jar:2.10 | |
| [DEBUG] Included: org.apache.maven.surefire:maven-surefire-common:jar:2.10 | |
| [DEBUG] Included: org.apache.maven.shared:maven-common-artifact-filters:jar:1.3 | |
| [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.1 | |
| [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-project:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-settings:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-profile:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-model:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-artifact-manager:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-registry:jar:2.0.9 | |
| [DEBUG] Excluded: org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1 | |
| [DEBUG] Excluded: junit:junit:jar:3.8.1 | |
| [DEBUG] Excluded: org.apache.maven:maven-core:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-repository-metadata:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-error-diagnostics:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-plugin-descriptor:jar:2.0.9 | |
| [DEBUG] Excluded: org.apache.maven:maven-monitor:jar:2.0.9 | |
| [DEBUG] Excluded: classworlds:classworlds:jar:1.1 | |
| [DEBUG] Excluded: org.apache.maven:maven-toolchain:jar:2.0.9 | |
| [DEBUG] Configuring mojo org.apache.maven.plugins:maven-surefire-plugin:2.10:test from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-surefire-plugin:2.10, parent: sun.misc.Launcher$AppClassLoader@51d92803] | |
| [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-surefire-plugin:2.10:test' with basic configurator --> | |
| [DEBUG] (s) basedir = /home/ross/workspace/ami-plugin | |
| [DEBUG] (s) childDelegation = false | |
| [DEBUG] (s) classesDirectory = /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] (s) disableXmlReport = false | |
| [DEBUG] (s) enableAssertions = true | |
| [DEBUG] (s) forkMode = once | |
| [DEBUG] (s) junitArtifactName = junit:junit | |
| [DEBUG] (s) localRepository = id: local | |
| url: file:///home/ross/.m2/repository/ | |
| layout: none | |
| [DEBUG] (f) parallelMavenExecution = false | |
| [DEBUG] (s) perCoreThreadCount = true | |
| [DEBUG] (s) pluginArtifactMap = {org.apache.maven.plugins:maven-surefire-plugin=org.apache.maven.plugins:maven-surefire-plugin:maven-plugin:2.10:, org.apache.maven.surefire:surefire-booter=org.apache.maven.surefire:surefire-booter:jar:2.10:compile, org.apache.maven.surefire:surefire-api=org.apache.maven.surefire:surefire-api:jar:2.10:compile, org.apache.maven.surefire:maven-surefire-common=org.apache.maven.surefire:maven-surefire-common:jar:2.10:compile, org.apache.maven.shared:maven-common-artifact-filters=org.apache.maven.shared:maven-common-artifact-filters:jar:1.3:compile, org.codehaus.plexus:plexus-utils=org.codehaus.plexus:plexus-utils:jar:2.1:compile, org.apache.maven.reporting:maven-reporting-api=org.apache.maven.reporting:maven-reporting-api:jar:2.0.9:compile} | |
| [DEBUG] (s) printSummary = true | |
| [DEBUG] (s) project = MavenProject: org.xml-cml:ami2:0.1-SNAPSHOT @ /home/ross/workspace/ami-plugin/pom.xml | |
| [DEBUG] (s) projectArtifactMap = {org.xml-cml:norma=org.xml-cml:norma:jar:0.1-SNAPSHOT:compile, org.xml-cml:cmine=org.xml-cml:cmine:jar:0.1-SNAPSHOT:compile, org.xml-cml:html=org.xml-cml:html:jar:0.2-SNAPSHOT:compile, org.xml-cml:svg=org.xml-cml:svg:jar:0.2-SNAPSHOT:compile, org.xml-cml:euclid=org.xml-cml:euclid:jar:1.1-SNAPSHOT:compile, log4j:log4j=log4j:log4j:jar:1.2.16:compile, org.apache.commons:commons-math=org.apache.commons:commons-math:jar:2.2:compile, joda-time:joda-time=joda-time:joda-time:jar:1.6.2:compile, xom:xom=xom:xom:jar:1.2.5:compile, xml-apis:xml-apis=xml-apis:xml-apis:jar:1.4.01:compile, jtidy:jtidy=jtidy:jtidy:jar:4aug2000r7-dev:compile, org.ccil.cowan.tagsoup:tagsoup=org.ccil.cowan.tagsoup:tagsoup:jar:1.2:compile, net.sourceforge.htmlunit:htmlunit=net.sourceforge.htmlunit:htmlunit:jar:2.15:compile, xalan:xalan=xalan:xalan:jar:2.7.1:compile, xalan:serializer=xalan:serializer:jar:2.7.1:compile, commons-collections:commons-collections=commons-collections:commons-collections:jar:3.2.1:compile, org.apache.commons:commons-lang3=org.apache.commons:commons-lang3:jar:3.3.2:compile, org.apache.httpcomponents:httpclient=org.apache.httpcomponents:httpclient:jar:4.3.3:compile, org.apache.httpcomponents:httpcore=org.apache.httpcomponents:httpcore:jar:4.3.2:compile, org.apache.httpcomponents:httpmime=org.apache.httpcomponents:httpmime:jar:4.3.3:compile, commons-codec:commons-codec=commons-codec:commons-codec:jar:1.9:compile, net.sourceforge.htmlunit:htmlunit-core-js=net.sourceforge.htmlunit:htmlunit-core-js:jar:2.15:compile, xerces:xercesImpl=xerces:xercesImpl:jar:2.11.0:compile, net.sourceforge.nekohtml:nekohtml=net.sourceforge.nekohtml:nekohtml:jar:1.9.21:compile, net.sourceforge.cssparser:cssparser=net.sourceforge.cssparser:cssparser:jar:0.9.14:compile, org.w3c.css:sac=org.w3c.css:sac:jar:1.3:compile, commons-logging:commons-logging=commons-logging:commons-logging:jar:1.1.3:compile, org.eclipse.jetty:jetty-websocket=org.eclipse.jetty:jetty-websocket:jar:8.1.15.v20140411:compile, org.eclipse.jetty:jetty-util=org.eclipse.jetty:jetty-util:jar:8.1.15.v20140411:compile, org.eclipse.jetty:jetty-io=org.eclipse.jetty:jetty-io:jar:8.1.15.v20140411:compile, org.eclipse.jetty:jetty-http=org.eclipse.jetty:jetty-http:jar:8.1.15.v20140411:compile, com.google.code.gson:gson=com.google.code.gson:gson:jar:2.3.1:compile, net.sf.saxon:Saxon-HE=net.sf.saxon:Saxon-HE:jar:9.6.0-3:compile, org.xml-cml:svg2xml=org.xml-cml:svg2xml:jar:0.1-SNAPSHOT:compile, org.xml-cml:pdf2svg=org.xml-cml:pdf2svg:jar:1.1-SNAPSHOT:compile, org.apache.pdfbox:pdfbox=org.apache.pdfbox:pdfbox:jar:1.8.8:compile, org.apache.pdfbox:fontbox=org.apache.pdfbox:fontbox:jar:1.8.8:compile, org.apache.pdfbox:jempbox=org.apache.pdfbox:jempbox:jar:1.8.8:compile, org.bouncycastle:bcprov-jdk16=org.bouncycastle:bcprov-jdk16:jar:1.46:compile, org.jsoup:jsoup=org.jsoup:jsoup:jar:1.8.2:compile, xmlunit:xmlunit=xmlunit:xmlunit:jar:1.4:compile, org.xml-cml:diagramanalyzer=org.xml-cml:diagramanalyzer:jar:0.1-SNAPSHOT:compile, org.xml-cml:javaocrnew=org.xml-cml:javaocrnew:jar:0.1-SNAPSHOT:compile, org.xml-cml:imageanalysis=org.xml-cml:imageanalysis:jar:0.1-SNAPSHOT:compile, org.boofcv:io=org.boofcv:io:jar:0.17:compile, org.ddogleg:ddogleg=org.ddogleg:ddogleg:jar:0.5:compile, org.boofcv:ip=org.boofcv:ip:jar:0.17:compile, com.thoughtworks.xstream:xstream=com.thoughtworks.xstream:xstream:jar:1.4.7:compile, xmlpull:xmlpull=xmlpull:xmlpull:jar:1.1.3.1:compile, xpp3:xpp3_min=xpp3:xpp3_min:jar:1.1.4c:compile, org.georegression:georegression=org.georegression:georegression:jar:0.6:compile, com.googlecode.efficient-java-matrix-library:ejml=com.googlecode.efficient-java-matrix-library:ejml:jar:0.25:compile, org.boofcv:feature=org.boofcv:feature:jar:0.17:compile, org.boofcv:visualize=org.boofcv:visualize:jar:0.17:compile, org.boofcv:recognition=org.boofcv:recognition:jar:0.17:compile, org.boofcv:sfm=org.boofcv:sfm:jar:0.17:compile, org.boofcv:calibration=org.boofcv:calibration:jar:0.17:compile, org.boofcv:geo=org.boofcv:geo:jar:0.17:compile, org.imgscalr:imgscalr-lib=org.imgscalr:imgscalr-lib:jar:4.2:compile, org.xml-cml:svgbuilder=org.xml-cml:svgbuilder:jar:0.1-SNAPSHOT:compile, com.google.code.findbugs:jsr305=com.google.code.findbugs:jsr305:jar:2.0.2:compile, org.apache.lucene:lucene-core=org.apache.lucene:lucene-core:jar:4.10.3:compile, org.apache.lucene:lucene-analyzers-common=org.apache.lucene:lucene-analyzers-common:jar:4.10.3:compile, com.google.guava:guava=com.google.guava:guava:jar:18.0:compile, junit:junit=junit:junit:jar:4.11:test, org.hamcrest:hamcrest-core=org.hamcrest:hamcrest-core:jar:1.3:test, blogspot.software-and-algorithms:stern-library=blogspot.software-and-algorithms:stern-library:jar:0.1:compile, org.vafer:jdeb=org.vafer:jdeb:jar:1.3:provided, commons-io:commons-io=commons-io:commons-io:jar:2.4:compile, org.apache.commons:commons-compress=org.apache.commons:commons-compress:jar:1.7:provided, org.tukaani:xz=org.tukaani:xz:jar:1.4:provided, org.apache.maven:maven-core=org.apache.maven:maven-core:jar:3.2.2:provided, org.apache.maven:maven-model=org.apache.maven:maven-model:jar:3.2.2:provided, org.apache.maven:maven-settings=org.apache.maven:maven-settings:jar:3.2.2:provided, org.apache.maven:maven-settings-builder=org.apache.maven:maven-settings-builder:jar:3.2.2:provided, org.apache.maven:maven-repository-metadata=org.apache.maven:maven-repository-metadata:jar:3.2.2:provided, org.apache.maven:maven-artifact=org.apache.maven:maven-artifact:jar:3.2.2:provided, org.apache.maven:maven-model-builder=org.apache.maven:maven-model-builder:jar:3.2.2:provided, org.apache.maven:maven-aether-provider=org.apache.maven:maven-aether-provider:jar:3.2.2:provided, org.eclipse.aether:aether-spi=org.eclipse.aether:aether-spi:jar:0.9.0.M2:provided, org.eclipse.aether:aether-impl=org.eclipse.aether:aether-impl:jar:0.9.0.M2:provided, org.eclipse.aether:aether-api=org.eclipse.aether:aether-api:jar:0.9.0.M2:provided, org.eclipse.aether:aether-util=org.eclipse.aether:aether-util:jar:0.9.0.M2:provided, org.eclipse.sisu:org.eclipse.sisu.plexus=org.eclipse.sisu:org.eclipse.sisu.plexus:jar:0.0.0.M5:provided, javax.enterprise:cdi-api=javax.enterprise:cdi-api:jar:1.0:provided, javax.annotation:jsr250-api=javax.annotation:jsr250-api:jar:1.0:provided, javax.inject:javax.inject=javax.inject:javax.inject:jar:1:provided, org.sonatype.sisu:sisu-guice=org.sonatype.sisu:sisu-guice:jar:no_aop:3.1.0:provided, aopalliance:aopalliance=aopalliance:aopalliance:jar:1.0:provided, org.eclipse.sisu:org.eclipse.sisu.inject=org.eclipse.sisu:org.eclipse.sisu.inject:jar:0.0.0.M5:provided, org.codehaus.plexus:plexus-interpolation=org.codehaus.plexus:plexus-interpolation:jar:1.19:provided, org.codehaus.plexus:plexus-utils=org.codehaus.plexus:plexus-utils:jar:3.0.17:provided, org.codehaus.plexus:plexus-classworlds=org.codehaus.plexus:plexus-classworlds:jar:2.5.1:provided, org.codehaus.plexus:plexus-component-annotations=org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:provided, org.sonatype.plexus:plexus-sec-dispatcher=org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:provided, org.sonatype.plexus:plexus-cipher=org.sonatype.plexus:plexus-cipher:jar:1.4:provided, org.apache.maven:maven-plugin-api=org.apache.maven:maven-plugin-api:jar:3.2.2:provided, org.apache.ant:ant=org.apache.ant:ant:jar:1.9.3:provided, org.apache.ant:ant-launcher=org.apache.ant:ant-launcher:jar:1.9.3:provided, org.bouncycastle:bcpg-jdk15on=org.bouncycastle:bcpg-jdk15on:jar:1.51:provided, org.bouncycastle:bcprov-jdk15on=org.bouncycastle:bcprov-jdk15on:jar:1.51:provided, com.jayway.jsonpath:json-path=com.jayway.jsonpath:json-path:jar:2.0.0:compile, org.slf4j:slf4j-api=org.slf4j:slf4j-api:jar:1.7.10:compile, net.minidev:json-smart=net.minidev:json-smart:jar:2.1.1:compile, net.minidev:asm=net.minidev:asm:jar:1.0.2:compile, asm:asm=asm:asm:jar:3.3.1:compile} | |
| [DEBUG] (s) redirectTestOutputToFile = false | |
| [DEBUG] (s) remoteRepositories = [ id: central | |
| url: https://repo.maven.apache.org/maven2 | |
| layout: default | |
| snapshots: [enabled => false, update => daily] | |
| releases: [enabled => true, update => never] | |
| ] | |
| [DEBUG] (s) reportFormat = brief | |
| [DEBUG] (s) reportsDirectory = /home/ross/workspace/ami-plugin/target/surefire-reports | |
| [DEBUG] (s) runOrder = filesystem | |
| [DEBUG] (s) session = org.apache.maven.execution.MavenSession@5a442a94 | |
| [DEBUG] (s) skip = false | |
| [DEBUG] (s) skipTests = false | |
| [DEBUG] (s) testClassesDirectory = /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] (s) testFailureIgnore = false | |
| [DEBUG] (s) testNGArtifactName = org.testng:testng | |
| [DEBUG] (s) testSourceDirectory = /home/ross/workspace/ami-plugin/src/test/java | |
| [DEBUG] (s) trimStackTrace = true | |
| [DEBUG] (s) useFile = true | |
| [DEBUG] (s) useManifestOnlyJar = true | |
| [DEBUG] (s) useSystemClassLoader = true | |
| [DEBUG] (s) useUnlimitedThreads = false | |
| [DEBUG] (s) workingDirectory = /home/ross/workspace/ami-plugin | |
| [DEBUG] -- end configuration -- | |
| [INFO] Surefire report directory: /home/ross/workspace/ami-plugin/target/surefire-reports | |
| [DEBUG] dummy:dummy:jar:1.0 (selected for null) | |
| [DEBUG] org.apache.maven.surefire:surefire-booter:jar:2.10:compile (selected for compile) | |
| [DEBUG] org.apache.maven.surefire:surefire-api:jar:2.10:compile (selected for compile) | |
| [DEBUG] Adding to surefire booter test classpath: /home/ross/.m2/repository/org/apache/maven/surefire/surefire-booter/2.10/surefire-booter-2.10.jar Scope: compile | |
| [DEBUG] Adding to surefire booter test classpath: /home/ross/.m2/repository/org/apache/maven/surefire/surefire-api/2.10/surefire-api-2.10.jar Scope: compile | |
| [DEBUG] Setting system property [user.dir]=[/home/ross/workspace/ami-plugin] | |
| [DEBUG] Setting system property [localRepository]=[/home/ross/.m2/repository] | |
| [DEBUG] Setting system property [basedir]=[/home/ross/workspace/ami-plugin] | |
| [DEBUG] Using JVM: /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java | |
| [DEBUG] dummy:dummy:jar:1.0 (selected for null) | |
| [DEBUG] org.apache.maven.surefire:surefire-junit4:jar:2.10:test (selected for test) | |
| [DEBUG] org.apache.maven.surefire:surefire-api:jar:2.10:test (selected for test) | |
| [DEBUG] Adding to surefire test classpath: /home/ross/.m2/repository/org/apache/maven/surefire/surefire-junit4/2.10/surefire-junit4-2.10.jar Scope: test | |
| [DEBUG] Adding to surefire test classpath: /home/ross/.m2/repository/org/apache/maven/surefire/surefire-api/2.10/surefire-api-2.10.jar Scope: test | |
| [DEBUG] test classpath classpath: | |
| [DEBUG] /home/ross/workspace/ami-plugin/target/test-classes | |
| [DEBUG] /home/ross/workspace/ami-plugin/target/classes | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
| [DEBUG] /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
| [DEBUG] /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
| [DEBUG] /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
| [DEBUG] /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
| [DEBUG] /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
| [DEBUG] /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
| [DEBUG] /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
| [DEBUG] /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
| [DEBUG] /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
| [DEBUG] /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
| [DEBUG] /home/ross/.m2/repository/junit/junit/4.11/junit-4.11.jar | |
| [DEBUG] /home/ross/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
| [DEBUG] /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
| [DEBUG] /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
| [DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
| [DEBUG] /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
| [DEBUG] /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
| [DEBUG] /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
| [DEBUG] /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar | |
| [DEBUG] provider classpath classpath: | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/surefire/surefire-junit4/2.10/surefire-junit4-2.10.jar | |
| [DEBUG] /home/ross/.m2/repository/org/apache/maven/surefire/surefire-api/2.10/surefire-api-2.10.jar | |
| ------------------------------------------------------- | |
| T E S T S | |
| ------------------------------------------------------- | |
| Forking command line: /bin/sh -c cd /home/ross/workspace/ami-plugin && /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java -jar /home/ross/workspace/ami-plugin/target/surefire/surefirebooter6196098330501910192.jar /home/ross/workspace/ami-plugin/target/surefire/surefire4437474142770458945tmp /home/ross/workspace/ami-plugin/target/surefire/surefire4672893114361321785tmp | |
| Running org.xmlcml.ami2.misc.HEPTest | |
| Tests run: 6, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 3.925 sec | |
| Running org.xmlcml.ami2.TutorialTest | |
| 0 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/word10a | |
| 819 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1261 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1529 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1552 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1674 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1809 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 1980 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 2109 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 2193 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 2301 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 2.0.1 | |
| 2352 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/regex10 | |
| 2.0.1 | |
| 6968 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/gene10 | |
| 2.0.1 | |
| 7897 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/clin10 | |
| 2.0.1 | |
| 2.0.1 | |
| 8541 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/word10 | |
| 2.0.1 | |
| 9068 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/species10 | |
| 10045 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Cannot resolve abbreviation: [N] | |
| 2.0.1 | |
| 10343 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/ident10 | |
| Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 11.211 sec | |
| Running org.xmlcml.ami2.plugins.regex.RegexPluginTest | |
| 2.0.1 | |
| 12645 [main] DEBUG org.xmlcml.ami2.plugins.regex.RegexComponent - Unusual fieldList: [caption, serial, text] in figure; found: <regex weight="1.0" fields="caption serial text">(.{0,25})([Ff]igure\s+(\d+|[A-Z])\s*\.?])\s+(.{0,40})</regex> | |
| 12738 [main] DEBUG org.xmlcml.ami2.plugins.regex.RegexComponent - Unusual fieldList: [paup, version] in phylotree; found: <regex weight="1.0" url="http://paup.csit.fsu.edu/" title="Phylogenetic Analysis Using Parsimony" fields="paup version" case="required">(.{0,25})(PAUP\*?\s*(\d+\.?\d*))\s+(.{0,40})</regex> | |
| 14171 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - outputMethod needs overwriting | |
| 2.0.1 | |
| 14176 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - File does not exist: /home/ross/workspace/ami-plugin/examples/theses/tesis_alexv6.5 | |
| 14217 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - Cannot create output: --project or --output must be given | |
| 2.0.1 | |
| 2.0.1 | |
| Tests run: 7, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 4.054 sec | |
| Running org.xmlcml.ami2.plugins.identifiers.IdentifierArgProcessorTest | |
| 2.0.1 | |
| Tests run: 5, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.309 sec | |
| Running org.xmlcml.ami2.plugins.gene.GeneArgProcessorTest | |
| 2.0.1 | |
| Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.378 sec | |
| Running org.xmlcml.ami2.plugins.species.SpeciesArgProcessorTest | |
| 15843 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Cannot resolve abbreviation: [A] | |
| 15843 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (O) : Opalina, Oculina | |
| 15844 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (T) : Tenacibaculum, Thalassomonas | |
| 16173 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Pseudokeronopsis | |
| 16173 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Pseudokeronopsis | |
| 16173 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Phaeobacter | |
| 16174 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Phaeobacter | |
| 16174 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Phaeobacter | |
| 16174 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Pseudokeronopsis | |
| 16174 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Pseudokeronopsis | |
| 16174 [main] ERROR org.xmlcml.ami2.plugins.species.LinneanNamer - Possible duplicate Genera for abbreviation (P) : Philaster, Pseudokeronopsis | |
| 2.0.1 | |
| Tests run: 3, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.776 sec | |
| Running org.xmlcml.ami2.plugins.species.NameMultimapTest | |
| 17051 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 9432 | |
| 17051 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 35484 | |
| 17642 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 9432 | |
| 17642 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 35484 | |
| 18232 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 9432 | |
| 18232 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 35484 | |
| 18902 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 9432 | |
| 18902 [main] DEBUG org.xmlcml.ami2.plugins.species.NameMultimap - 35484 | |
| Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.676 sec | |
| Running org.xmlcml.ami2.plugins.simple.SimplePluginTest | |
| Tests run: 3, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.001 sec | |
| Running org.xmlcml.ami2.plugins.AMIPluginTest | |
| 22589 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/ieee/words | |
| 2.0.1 | |
| Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.879 sec | |
| Running org.xmlcml.ami2.plugins.phylotree.HOCRPhyloTreeTest | |
| 22936 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlTree - rootList 1 | |
| 23320 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - competing words for tip | |
| 23393 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlTree - rootList 1 | |
| 23432 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlTree - rootList 1 | |
| 23562 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - competing words for tip | |
| Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.799 sec | |
| Running org.xmlcml.ami2.plugins.phylotree.StringsTest | |
| Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec | |
| Running org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactoryTest | |
| Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0 sec | |
| Running org.xmlcml.ami2.plugins.phylotree.nexml.NexmlTest | |
| Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec | |
| Running org.xmlcml.ami2.plugins.phylotree.PhyloArgProcessorTest | |
| 2.0.1 | |
| 23656 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899781036; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 29695 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 29695 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899781036/null.pbm.png.hocr.html | |
| 29695 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899781036/null.pbm.png.hocr.hocr | |
| 29695 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/junk/1439899781036/null.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/junk/1439899781036/null.pbm.png.hocr.hocr | |
| 29695 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| 29696 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cTreeLog: [org.xmlcml.cmine.args.log.CMineLog: log] | |
| 29696 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - outputResultElement NYI null; need to add tree | |
| 2.0.1 | |
| 29715 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899787095; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 35722 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 35722 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899787095/null.pbm.png.hocr.html | |
| 35722 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899787095/null.pbm.png.hocr.hocr | |
| 35722 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/junk/1439899787095/null.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/junk/1439899787095/null.pbm.png.hocr.hocr | |
| 35722 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| 35723 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cTreeLog: [org.xmlcml.cmine.args.log.CMineLog: log] | |
| 35723 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - outputResultElement NYI null; need to add tree | |
| Tests run: 6, Failures: 0, Errors: 1, Skipped: 3, Time elapsed: 12.168 sec <<< FAILURE! | |
| Running org.xmlcml.ami2.plugins.phylotree.MergeTipTest | |
| 35771 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899793151; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 41578 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899793151/null.pbm.png.hocr.html | |
| 41578 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899793151/null.pbm.png.hocr.hocr | |
| 41578 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899793151/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899793151/null.pbm.png.hocr.html | |
| 46178 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 46187 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:2_829(2,829)> | |
| 46188 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 46191 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - NULL ROOT NODE | |
| 46191 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 46342 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - competing words for tip | |
| 46362 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 46369 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899803749; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 49773 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899803749/null.pbm.png.hocr.html | |
| 49774 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899803749/null.pbm.png.hocr.hocr | |
| 49774 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899803749/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899803749/null.pbm.png.hocr.html | |
| 51153 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 51153 [main] DEBUG org.xmlcml.diagrams.phylo.PhyloTreePixelAnalyzer - FATAL ERROR: java.lang.RuntimeException: Probable cycle in graph: < l:695_262(695,262)> | |
| 51154 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 51154 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - Cannot create tree | |
| 51154 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 51159 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899808539; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 57171 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 57171 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899808539/null.pbm.png.hocr.html | |
| 57171 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899808539/null.pbm.png.hocr.hocr | |
| 57171 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/junk/1439899808539/null.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/junk/1439899808539/null.pbm.png.hocr.hocr | |
| 57171 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| 57171 [main] ERROR org.xmlcml.ami2.plugins.phylotree.HOCRPhyloTreeTest - failed to create tree | |
| 57176 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899814556; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 61481 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899814556/null.pbm.png.hocr.html | |
| 61482 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899814556/null.pbm.png.hocr.hocr | |
| 61482 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899814556/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899814556/null.pbm.png.hocr.html | |
| 67499 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 67501 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:4_399(4,399)> | |
| 67501 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 67502 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - NULL ROOT NODE | |
| 67502 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 67534 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 67541 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899824921; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 71746 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899824921/null.pbm.png.hocr.html | |
| 71746 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899824921/null.pbm.png.hocr.hocr | |
| 71747 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899824921/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899824921/null.pbm.png.hocr.html | |
| 74582 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 74584 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:2_757(2,757)> | |
| 74585 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 74586 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - NULL ROOT NODE | |
| 74586 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 74633 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - competing words for tip | |
| 74635 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 74640 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899832020; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 78646 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899832020/null.pbm.png.hocr.html | |
| 78646 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899832020/null.pbm.png.hocr.hocr | |
| 78646 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899832020/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899832020/null.pbm.png.hocr.html | |
| 82124 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 82126 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:1_97(1,97)> | |
| 82127 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 82128 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - NULL ROOT NODE | |
| 82128 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 82166 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 82172 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899839552; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 88180 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 88180 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899839552/null.pbm.png.hocr.html | |
| 88180 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899839552/null.pbm.png.hocr.hocr | |
| 88180 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/junk/1439899839552/null.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/junk/1439899839552/null.pbm.png.hocr.hocr | |
| 88180 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| 88180 [main] ERROR org.xmlcml.ami2.plugins.phylotree.HOCRPhyloTreeTest - failed to create tree | |
| 88192 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899845572; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 94199 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899845572/null.pbm.png.hocr.html | |
| 94199 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899845572/null.pbm.png.hocr.hocr | |
| 94200 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/junk/1439899845572/null.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/junk/1439899845572/null.pbm.png.hocr.html | |
| 99296 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 99299 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:3_988(3,988)> | |
| 99299 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 99301 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - NULL ROOT NODE | |
| 99301 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 99396 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 99401 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - PhyloTree output to: target/junk/1439899856781; suggest you setOutputDir() | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 105409 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 105409 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/junk/1439899856781/null.pbm.png.hocr.html | |
| 105409 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/junk/1439899856781/null.pbm.png.hocr.hocr | |
| 105409 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/junk/1439899856781/null.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/junk/1439899856781/null.pbm.png.hocr.hocr | |
| 105409 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| 105409 [main] ERROR org.xmlcml.ami2.plugins.phylotree.HOCRPhyloTreeTest - failed to create tree | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 111422 [main] ERROR org.xmlcml.norma.image.ocr.ImageToHOCRConverter - Process failed to terminate after :60 | |
| 111422 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/phylo/combined/15goodtree/ijs.0.000364-0-004.pbm.png.hocr.html | |
| 111422 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/phylo/combined/15goodtree/ijs.0.000364-0-004.pbm.png.hocr.hocr | |
| 111422 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - failed to create: /home/ross/workspace/ami-plugin/target/phylo/combined/15goodtree/ijs.0.000364-0-004.pbm.png.hocr.html or /home/ross/workspace/ami-plugin/target/phylo/combined/15goodtree/ijs.0.000364-0-004.pbm.png.hocr.hocr | |
| 111422 [main] ERROR org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - cannot run tesseract | |
| Tesseract Open Source OCR Engine v3.03 with Leptonica | |
| 113562 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating HTML output: /home/ross/workspace/ami-plugin/target/phylo/misc/ijs.0.000174-0-000.pbm.pbm.png.hocr.html | |
| 113562 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - creating hocr.hocr name: /home/ross/workspace/ami-plugin/target/phylo/misc/ijs.0.000174-0-000.pbm.pbm.png.hocr.hocr | |
| 113562 [main] DEBUG org.xmlcml.norma.image.ocr.ImageToHOCRConverter - copying /home/ross/workspace/ami-plugin/target/phylo/misc/ijs.0.000174-0-000.pbm.pbm.png.hocr.hocr to /home/ross/workspace/ami-plugin/target/phylo/misc/ijs.0.000174-0-000.pbm.pbm.png.hocr.html | |
| 114754 [main] DEBUG org.xmlcml.diagrams.DiagramAnalyzer - analyzing first graph only | |
| 114756 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - set rootPixelNode: < l:2_390(2,390)> | |
| 114756 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - ROOT TRUE NT1.1 | |
| 114756 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.nexml.NexmlFactory - addEdges | |
| 114756 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - created nexml | |
| 114765 [main] DEBUG org.xmlcml.ami2.plugins.phylotree.PhyloTreeArgProcessor - mergedOCR and tree | |
| 114766 [main] ERROR org.xmlcml.ami2.plugins.phylotree.nexml.NexmlTree - No root Node ... looking | |
| Tests run: 9, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 79.001 sec | |
| Running org.xmlcml.ami2.plugins.RegressionDemoTest | |
| 2.0.1 | |
| 2.0.1 | |
| 2.0.1 | |
| 2.0.1 | |
| 115102 [main] DEBUG org.xmlcml.ami2.plugins.RegressionDemoTest - --sp.species --context 35 50 --sp.type binomial genus genussp -q target/multiple/bmc_trials_15_1_511 target/multiple/http_www.trialsjournal.com_content_16_1_1 -i scholarly.html | |
| 2.0.1 | |
| 115106 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - File does not exist: /home/ross/workspace/ami-plugin/target/multiple/bmc_trials_15_1_511 | |
| 115106 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - File does not exist: /home/ross/workspace/ami-plugin/target/multiple/http_www.trialsjournal.com_content_16_1_1 | |
| 115107 [main] ERROR org.xmlcml.cmine.args.DefaultArgProcessor - Cannot create output: --project or --output must be given | |
| 2.0.1 | |
| Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.895 sec | |
| Running org.xmlcml.ami2.plugins.word.DigramTest | |
| Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 sec | |
| Running org.xmlcml.ami2.plugins.word.WordTest | |
| 115834 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/examples_16_1_1 | |
| 115886 [main] ERROR org.xmlcml.ami2.plugins.word.WordArgProcessor - Null results element, skipped target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1 | |
| 115892 [main] DEBUG org.xmlcml.cmine.args.DefaultArgProcessor - ... No reserved files or directories: dir: target/examples_16_1_1 | |
| 116023 [main] ERROR org.xmlcml.ami2.plugins.word.WordArgProcessor - Null results element, skipped target/examples_16_1_1/http_www.trialsjournal.com_content_16_1_1 | |
| 2.0.1 | |
| 2.0.1 | |
| Tests run: 9, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.593 sec | |
| Running org.xmlcml.ami2.plugins.word.TesseractTest | |
| Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec | |
| Running org.xmlcml.ami2.plugins.sequence.SequenceArgProcessorTest | |
| 2.0.1 | |
| Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.056 sec | |
| Running org.xmlcml.ami2.plugins.eng.EngTest | |
| 118659 [main] WARN org.xmlcml.ami2.plugins.word.WordCollectionFactory - No scholarlyHtml or PDFTXT: target/eng/01268283 | |
| 118659 [main] WARN org.xmlcml.ami2.plugins.word.WordCollectionFactory - No current words | |
| Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.479 sec | |
| Running org.xmlcml.ami2.lookups.WikipediaLookupTest | |
| Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0 sec | |
| Running org.xmlcml.ami2.lookups.GBIFLookupTest | |
| 118939 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://api.gbif.org/v1/species/search?q=Blue+whale | |
| SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". | |
| SLF4J: Defaulting to no-operation (NOP) logger implementation | |
| SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. | |
| Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.449 sec | |
| Running org.xmlcml.ami2.lookups.GenbankLookupTest | |
| 119374 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=JX170864&retmode=xml | |
| 119701 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=taxonomy&term=Pyramidobacter+piscolens&retmode=xml | |
| 119873 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=CAB15547&retmode=xml | |
| 120513 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=taxonomy&term=Erithacus+rubecula&retmode=xml | |
| 120674 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=EU379932&retmode=xml | |
| 120806 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=taxonomy&term=Bacillus+subtilis&retmode=xml | |
| 120949 [main] DEBUG org.xmlcml.cmine.lookup.AbstractLookup - url: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=EU379932&retmode=xml | |
| Tests run: 11, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 1.707 sec | |
| Running org.xmlcml.ami2.AMIArgProcessorTest | |
| ami(0.1.13) | |
| ami(0.1.13) | |
| Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec | |
| Results : | |
| Tests in error: | |
| testEditLabels(org.xmlcml.ami2.plugins.phylotree.PhyloArgProcessorTest) | |
| Tests run: 111, Failures: 0, Errors: 1, Skipped: 32 | |
| [INFO] ------------------------------------------------------------------------ | |
| [INFO] BUILD FAILURE | |
| [INFO] ------------------------------------------------------------------------ | |
| [INFO] Total time: 2:24.920s | |
| [INFO] Finished at: Tue Aug 18 13:11:18 BST 2015 | |
| [INFO] Final Memory: 23M/245M | |
| [INFO] ------------------------------------------------------------------------ | |
| [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.10:test (default-test) on project ami2: There are test failures. | |
| [ERROR] | |
| [ERROR] Please refer to /home/ross/workspace/ami-plugin/target/surefire-reports for the individual test results. | |
| [ERROR] -> [Help 1] | |
| org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.10:test (default-test) on project ami2: There are test failures. | |
| Please refer to /home/ross/workspace/ami-plugin/target/surefire-reports for the individual test results. | |
| at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) | |
| at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) | |
| at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) | |
| at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) | |
| at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) | |
| at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) | |
| at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) | |
| at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320) | |
| at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) | |
| at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537) | |
| at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196) | |
| at org.apache.maven.cli.MavenCli.main(MavenCli.java:141) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| at java.lang.reflect.Method.invoke(Method.java:606) | |
| at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) | |
| at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) | |
| at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) | |
| at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) | |
| Caused by: org.apache.maven.plugin.MojoFailureException: There are test failures. | |
| Please refer to /home/ross/workspace/ami-plugin/target/surefire-reports for the individual test results. | |
| at org.apache.maven.plugin.surefire.SurefireHelper.reportExecution(SurefireHelper.java:87) | |
| at org.apache.maven.plugin.surefire.SurefirePlugin.writeSummary(SurefirePlugin.java:641) | |
| at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:615) | |
| at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:137) | |
| at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:98) | |
| at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) | |
| at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) | |
| ... 19 more | |
| [ERROR] | |
| [ERROR] | |
| [ERROR] For more information about the errors and possible solutions, please read the following articles: | |
| [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException |
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