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rossmounce / rsbl-suppdata
Created June 19, 2015 14:40
All supplementary data files for Biology Letters papers (Royal Society)
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.101.DC1/rsbl20050379supp1.avi
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.101.DC1/rsbl20050379supp2.avi
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.113.DC1/rsbl20050374supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.116.DC1/rsbl20050406supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.125.DC1/rsbl20050378supp1.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.128.DC1/rsbl20050386supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.131.DC1/rsbl20050388supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.140.DC1/rsbl20050390supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.148.DC1/rsbl20050397supp.pdf
http://rsbl.royalsocietypublishing.org/content/suppl/2008/12/08/2.1.152.DC1/rsbl20050401supp.pdf
@rossmounce
rossmounce / asciitrees.tre
Last active August 29, 2015 14:27
example data for STK2 bug report
(((((EU379932:195.0,EU840722:135.0)NT1.25:86.0,EU840723:301.0)NT1.17:131.0,(NC_000853:251.0,NC_000918:364.0)NT1.15:106.0)NT1.5:12.0,(NC_009525:223.0,NC_004307:333.0)NT1.19:158.0)NT1.2:10.0,((NC_010571:441.0,(((Desulfo:295.0,((((ES:140.0,U32697:164.0)NT1.28:63.0,NC_OO2516:165.0)NT1.22:24.0,(NC_002929:183.0,NC_002946:185.0)NT1.26:55.0)NT1.21:78.0,(NC_009667:186.0,NC_002696:194.0)NT1.23:105.0)NT1.14:56.0)NT1.10:21.0,(NC_001218:279.0,NC_002967:302.0)NT1.16:107.0)NT1.8:8.0,((AEO15924:189.0,NC_003228:191.0)NT1.27:187.0,NC_OO2932:343.0)NT1.12:55.0)NT1.6:11.0,NC_005027:497.0)NT1.3:6.0,((NC_006576:348.0,(AJ307978:124.0,AJ307974:167.0)NT1.24:205.0)NT1.7:12.0,(NC_000912:484.0,((M94261:260.0,NC_010376:320.0)NT1.13:33.0,((Lactoba:157.0,NC_009785:181.0)NT1.20:21.0,NC_00964:152.0)NT1.18:91.0)NT1.11:22.0)NT1.9:32.0)NT1.4:11.0)NT1.1:9.0)NT1.60;
(((AACO7677:305.0,AAD36645:324.0)NT1.5:25.0,DU723069:293.0)NT1.2:11.0,(BAD79413:350.0,((ABY33776:363.0,(((((AAGO7791:238.0,(NP_285794:178.0,ABROO457:214.0)NT1.22:53.0)NT1.20:37.0,(AAW8
@rossmounce
rossmounce / error log
Created August 18, 2015 12:14
Apache Maven 3.0.5
Maven home: /usr/share/maven
Java version: 1.7.0_79, vendor: Oracle Corporation
Java home: /usr/lib/jvm/java-7-openjdk-amd64/jre
Default locale: en_GB, platform encoding: UTF-8
OS name: "linux", version: "3.19.0-25-generic", arch: "amd64", family: "unix"
[INFO] Error stacktraces are turned on.
[DEBUG] Reading global settings from /usr/share/maven/conf/settings.xml
[DEBUG] Reading user settings from /home/ross/.m2/settings.xml
[DEBUG] Using local repository at /home/ross/.m2/repository
@rossmounce
rossmounce / table.tsv
Last active August 29, 2015 14:27
Larger batch 2015-08-21
We can make this file beautiful and searchable if this error is corrected: It looks like row 2 should actually have 1 column, instead of 6. in line 1.
FileName TipsInFile EmptyTips ExactMatchEGIDs SpacesInParentheses noEGID
02565-0-001 16 7 9 0 7
025668-0-000 12 2 7 3 2
025668-0-001 12 2 0 0 12
02567-0-000 21 21 0 0 21
025700-0-000 0 0 0 0 0
025718-0-000 30 7 18 5 8
025742-0-001 26 1 23 1 1
02576-0-000 21 0 0 0 21
02576-0-001 17 1 13 3 1
@rossmounce
rossmounce / log.log
Created August 21, 2015 21:32
mvn clean install (of latest code from pmr github)
Apache Maven 3.0.5
Maven home: /usr/share/maven
Java version: 1.7.0_79, vendor: Oracle Corporation
Java home: /usr/lib/jvm/java-7-openjdk-amd64/jre
Default locale: en_GB, platform encoding: UTF-8
OS name: "linux", version: "3.19.0-26-generic", arch: "amd64", family: "unix"
[INFO] Error stacktraces are turned on.
[DEBUG] Reading global settings from /usr/share/maven/conf/settings.xml
[DEBUG] Reading user settings from /home/ross/.m2/settings.xml
[DEBUG] Using local repository at /home/ross/.m2/repository
@rossmounce
rossmounce / 172 two & three letter genus names
Created September 19, 2015 15:11
List of two or three letter genus names, thanks to Paul Kirk [TAXACOM] http://mailman.nhm.ku.edu/pipermail/taxacom/2007-January/061176.html
Aa
Ada
Age
Aha
Aix
Aka
Ala
Anx
Aon
Ara
@rossmounce
rossmounce / 100 botanical gardens
Created November 7, 2015 10:51
4334;Abbotsbury Subtropical Gardens;Bullers Way;Abbotsbury;Weymouth;Dorset;;United Kingdom;50.662224;-2.629523
4888;Abby Aldrich Rockefeller Garden;Private;;Seal Harbor;Maine;04675;United States of America;44.303333;-68.240278
4426;Abkhazi Garden;1964 Fairfield Road;;Victoria;British Columbia;V8S 1H4;Canada;48.415687;-123.32619
5062;ABQ BioPark;2601 Central NW;;Albuquerque;New Mexico;87104;United States of America;35.093028;-106.679323
4921;Abubakar Tafawa Balewa University Garden;Ran Road;;;Bauchi;;Nigeria;10.32736;9.84636
3331;Abuja Gardens;;;Abuja;Abuja;;Nigeria;9.0580;7.4890
1246;Aburi Botanic Gardens;PO Box 23, ABURI, Akwiapim, Ghana.;P.O.Box M169 Accra Ghana;Aburi;;;Ghana;5.8469;-0.1755
53;Acharya Jagadish Chandra Bose Indian Botanic Garden;Botanical Survey of India;Shibpur;Howrah;West Bengal;711 103;India;22.6507;88.2658
757;Adam Mickiewicz University Botanical Garden in Poznań;Dąbrowskiego 165, 60-594 POZNAŃ, Poland.;;Poznań;;;Poland;52.4063;16.9251
1233;Adkins Arboretum;12610 Eveland Road;;Ridgely;
@rossmounce
rossmounce / two-large-nonbinary-trees
Created December 21, 2015 15:29
(Psychromonas_antarctica,((((Escherichia_coli,(Klebsiella_pneumoniae,Klebsiella_variicola,Klebsiella_oxytoca,Klebsiella_granulomatis),(Serratia_marcescens,Serratia_entomophila,Serratia_ficaria,Serratia_fonticola,Serratia_plymuthica,Serratia_rubidaea,Serratia_liquefaciens),Kluyvera_ascorbata,(Raoultella_ornithinolytica,Raoultella_planticola,Raoultella_terrigena),Brenneria_salicis,Kosakonia_cowanii,Pluralibacter_pyrinus,Pantoea_agglomerans,(Enterobacter_aerogenes,(Enterobacter_cancerogenus,Enterobacter_asburiae),Enterobacter_mori),(Lelliottia_amnigena,Lelliottia_nimipressuralis),(Citrobacter_gillenii,Citrobacter_freundii),Obesumbacterium_proteus,Yersinia_pestis,Cedecea_davisae,Salmonella_enterica,(Dickeya_chrysanthemi,Dickeya_dadantii),Plesiomonas_shigelloides),((Vibrio_proteolyticus,Vibrio_neptunius,Vibrio_coralliilyticus,Vibrio_cholerae,Vibrio_agarivorans,Vibrio_diazotrophicus,Vibrio_vulnificus,Vibrio_gazogenes,Vibrio_alginolyticus),(Aliivibrio_fischeri,Aliivibrio_logei),(Photobacterium_aplysiae,Photobacteriu
@rossmounce
rossmounce / A list of plant genera
Created February 5, 2016 14:24
for a bug report
Aa
Aa
Aaronsohnia
Narthecium
Abarema
Abarema
Abarema
Abarema
Abarema
Abarema
@rossmounce
rossmounce / List with a blank
Created February 5, 2016 14:45
Example bad input for a bug report
Aa
Aa
Aaronsohnia
Narthecium
Abarema
Abarema
Abarema
Abarema