Output from brew doctor

02.make

/usr/bin/make  install-recursive
Making install in src
/usr/bin/make  install-am
  CC     cairo-analysis-surface.lo
  CC     cairo-arc.lo
  CC     cairo-array.lo
  CC     cairo-atomic.lo
brew: superenv removed: -Wall -Wextra -Wold-style-definition -Wdeclaration-after-statement -Wmissing-declarations -Wimplicit-function-declaration -Wnested-externs -Wpointer-arith -Wwrite-strings -Wsign-compare -Wstrict-prototypes -Wmissing-prototypes -Wpacked -Wswitch-enum -Wmissing-format-attribute -Wbad-function-cast -Wvolatile-register-var -Wstrict-aliasing=2 -Winit-self -Wno-missing-field-initializers -Wno-unused-parameter -Wno-attributes -Wno-long-long -Winline -Wp,-D_FORTIFY_SOURCE=2 -Wno-unused-but-set-variable -g -O2
brew: superenv removed: -Wall -Wextra -Wold-style-definition -Wdeclaration-after-statement -Wmissing-declarations -Wimplicit-function-declaration -Wnested-externs -Wpointer-arith -Wwrite-strings -Wsign-compare -Wstrict-prototypes -Wmissing-prototypes -Wpacked -Wswitch-enum -Wmissing-format-attribute -Wbad-function-cast -Wvolatile-register-var -Wstrict-aliasing=2 -Winit-self -Wno-missing-field-initializers -Wno-unused-parameter -Wno-attributes -Wno-long-long -Winline -Wp,-D_FORTIFY_SOURCE=2 -Wno-unused-but-set-variable -g -O2
brew: superenv removed: -Wall -Wextra -Wold-style-definition -Wdeclaration-after-statement -Wmissing-declarations -Wimplicit-function-declaration -Wnested-externs -Wpointer-arith -Wwrite-strings -Wsign-compare -Wstrict-prototypes -Wmissing-prototypes -Wpacked -Wswitch-enum -Wmissing-format-attribute -Wbad-function-cast -Wvolatile-register-var -Wstrict-aliasing=2 -Winit-self -Wno-missing-field-initializers -Wno-unused-parameter -Wno-attributes -Wno-long-long -Winline -Wp,-D_FORTIFY_SOURCE=2 -Wno-unused-but-set-variable -g -O2
brew: superenv removed: -Wall -Wextra -Wold-style-definition -Wdeclaration-after-statement -Wmissing-declarations -Wimplicit-function-declaration -Wnested-externs -Wpointer-arith -Wwrite-strings -Wsign-compare -Wstrict-prototypes -Wmissing-prototypes -Wpacked -Wswitch-enum -Wmissing-format-attribute -Wbad-function-cast -Wvolatile-register-var -Wstrict-aliasing=2 -Winit-self -Wno-missing-field-initializers -Wno-unused-parameter -Wno-attributes -Wno-long-long -Winline -Wp,-D_FORTIFY_SOURCE=2 -Wno-unused-but-set-variable -g -O2
In file included from In file included from cairo-arc.c:37:
In file included from ./cairoint.h:74cairo-atomic.c:34:
In file included from ./cairoint.h:74:
In file included from In file included from cairo-analysis-surface.c::
./cairo-error-private.h:4337:
In file included from ./cairoint.h::
In file included from ./cairo-types-private.h74:
In file included from :43:
In file included from ./cairo-error-private.h./cairo-error-private.h::43:
In file included from In file included from In file included from 43cairo-array.c./cairo-fixed-type-private.h./cairo-types-private.h:
:In file included from :./cairo-types-private.h4043:39:
::
./cairo-wideint-type-private.h43::
In file included from ./cairo-fixed-type-private.h:
In file included from In file included from 129:./cairo-fixed-type-private.h40:40:
:
:9:./cairo-wideint-type-private.h./cairoint.h::12974:./cairo-wideint-type-private.h:
:9: 129error: : unknown type name '__uint128_t'9
error: In file included from unknown type name '__uint128_t'./cairo-error-private.h:
: error: unknown type name '__uint128_t'
43:
typedef __uint128_t uint128_t;In file included from 
./cairo-types-private.h        ^:
typedef __uint128_t uint128_t;43:
typedef __uint128_t uint128_t;In file included from 

        ^
./cairo-fixed-type-private.h:        ^40:

./cairo-wideint-type-private.h:129:9: error: unknown type name '__uint128_t'
typedef __uint128_t uint128_t;
        ^
./cairo-wideint-type-private.h./cairo-wideint-type-private.h:130:9:: 130./cairo-wideint-type-private.herror: :unknown type name '__int128_t':130:9: error: 
unknown type name '__int128_t'
9typedef __int128_t int128_t;typedef __int128_t int128_t;

        ^        ^
: 
error: unknown type name '__int128_t'
typedef __int128_t int128_t;
        ^
./cairo-wideint-type-private.h:130:9: error: unknown type name '__int128_t'
typedef __int128_t int128_t;
        ^
2 errors generated.
make[3]: *** [cairo-atomic.lo] Error 1
make[3]: *** Waiting for unfinished jobs....
2 errors generated.
make[3]: *** [cairo-array.lo] Error 1
2 errors generated.
make[3]: *** [cairo-arc.lo] Error 1
2 errors generated.
make[3]: *** [cairo-analysis-surface.lo] Error 1
make[2]: *** [install] Error 2
make[1]: *** [install-recursive] Error 1
make: *** [install] Error 2

HOMEBREW_VERSION: 0.9.3
HEAD: af22822a2b7b5a205e7850ab34bdeea3d468f6de
CPU: quad-core 64-bit arrandale
OS X: 10.8.1-x86_64
Xcode: 4.5 => 
CLT: 4.5.0.0.1.1249367152
X11: 2.7.3 => /opt/X11

gistfile1.txt

$ brew doctor
Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.

Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:

    /Library/Frameworks/Python.framework/Versions/2.7/bin/python-config
    /Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7-config
Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
    /usr/local/lib/libcdt.4.dylib    /usr/local/lib/libcgraph.5.dylib    /usr/local/li
b/libfuse4x.2.dylib    /usr/local/lib/libgraph.4.dylib    /usr/local/lib/libgvc.5.dyli
b    /usr/local/lib/libgvpr.1.dylib
Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .la files:
    /usr/local/lib/libcdt.la    /usr/local/lib/libcgraph.la    /usr/local/lib/libfuse4
x.la    /usr/local/lib/libgraph.la    /usr/local/lib/libgvc.la    /usr/local/lib/libgv
pr.la    /usr/local/lib/libpathplan.la    /usr/local/lib/libxdot.la
Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .pc files:
    /usr/local/lib/pkgconfig/fuse-ext2.pc
Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:

    brew install cairo gtk+ pango

Run `brew missing` for more details.