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rsangole/fs_error.log

Created March 20, 2018 15:16
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fs install error
Raw
fs_error.log
> install.packages('fs',repos='http://cran.us.r-project.org')
Installing package into ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 48 777k 48 374k 0 0 353k 0 0:00:02 0:00:01 0:00:01 353k100 777k 100 777k 0 0 641k 0 0:00:01 0:00:01 --:--:-- 642k
* installing *source* package ‘fs’ ...
** package ‘fs’ successfully unpacked and MD5 sums checked
** libs
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c id.cc -o id.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'id.o' failed
make: [id.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c utils.cc -o utils.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'utils.o' failed
make: [utils.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c file.cc -o file.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'file.o' failed
make: [file.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c path.cc -o path.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'path.o' failed
make: [path.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c link.cc -o link.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'link.o' failed
make: [link.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c fs.cc -o fs.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'fs.o' failed
make: [fs.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c dir.cc -o dir.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'dir.o' failed
make: [dir.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c error.cc -o error.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'error.o' failed
make: [error.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c unix/getmode.cc -o unix/getmode.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'unix/getmode.o' failed
make: [unix/getmode.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -c RcppExports.cpp -o RcppExports.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'RcppExports.o' failed
make: [RcppExports.o] Error 127 (ignored)
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c bsd/setmode.c -o bsd/setmode.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c bsd/strmode.c -o bsd/strmode.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I. -DU_STATIC_IMPLEMENTATION -I"/usr/lib64/microsoft-r/3.3/lib64/R/library/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c bsd/reallocarray.c -o bsd/reallocarray.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv && CC="gcc -std=gnu99" CFLAGS="-DU_STATIC_IMPLEMENTATION -O2 -g -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="" ./configure --quiet)
make --directory=libuv \
HAVE_DTRACE=0
make[1]: Entering directory '/tmp/RtmpNar0iw/R.INSTALL1af51c965295/fs/src/libuv'
CC src/libuv_la-fs-poll.lo
CC src/libuv_la-inet.lo
CC src/libuv_la-threadpool.lo
CC src/libuv_la-uv-common.lo
CC src/libuv_la-version.lo
CC src/unix/libuv_la-async.lo
CC src/unix/libuv_la-core.lo
CC src/unix/libuv_la-dl.lo
CC src/unix/libuv_la-fs.lo
CC src/unix/libuv_la-getaddrinfo.lo
CC src/unix/libuv_la-getnameinfo.lo
CC src/unix/libuv_la-loop-watcher.lo
CC src/unix/libuv_la-loop.lo
CC src/unix/libuv_la-pipe.lo
CC src/unix/libuv_la-poll.lo
CC src/unix/libuv_la-process.lo
CC src/unix/libuv_la-signal.lo
CC src/unix/libuv_la-stream.lo
CC src/unix/libuv_la-tcp.lo
CC src/unix/libuv_la-thread.lo
CC src/unix/libuv_la-timer.lo
CC src/unix/libuv_la-tty.lo
CC src/unix/libuv_la-udp.lo
CC src/unix/libuv_la-linux-core.lo
CC src/unix/libuv_la-linux-inotify.lo
CC src/unix/libuv_la-linux-syscalls.lo
CC src/unix/libuv_la-procfs-exepath.lo
CC src/unix/libuv_la-proctitle.lo
CC src/unix/libuv_la-sysinfo-loadavg.lo
CC src/unix/libuv_la-sysinfo-memory.lo
CCLD libuv.la
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/tmp/RtmpNar0iw/R.INSTALL1af51c965295/fs/src/libuv'
-shared -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -o fs.so id.o utils.o file.o path.o link.o fs.o dir.o error.o unix/getmode.o RcppExports.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv/.libs/libuv.a -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -lR
sh: line 2: -shared: command not found
/usr/lib64/microsoft-r/3.3/lib64/R/share/make/shlib.mk:6: recipe for target 'fs.so' failed
make: *** [fs.so] Error 127
ERROR: compilation failed for package ‘fs’
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/fs’
Warning in install.packages :
installation of package ‘fs’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpkkiUQy/downloaded_packages’
>
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