gistfile1.builder

require "dm-core"
require "dm-types"
require "noorm"

module NOORM
  class Disease
    property :concept_id, String, :key => true
    property :name, String
  end

  class SubsetComparison
    has n, :genes, "Gene", :repository => repository(:user_rpt)
    has n, :rankdiffs, "Rankdiff", :repository => repository(:user_rpt)
    has n, :comparison_correlations, "ComparisonCorrelation", :repository => repository(:user_rpt)
  end

  class Experiment
    has n, :subset_comparisons
  end

  class Tissue < Base
    has n, :cui_analyses, "CUIAnalysis", :child_key => [:cui],
    :parent_key => [:concept_id], :repository => repository(:user_rpt)
  end
  
end
module ORM
  module Correlation
    def self.included(model)
      model.class_eval do
        include DataMapper::Resource
        def self.default_repository_name; :user_rpt; end
        property :correlation, Float
        property :p_value, Float
        property :adjusted_p_value, DataMapper::Property::Decimal, :precision => 50
        property :permutation_p_value, Float
        property :method, DataMapper::Property::Enum[:pearson, :spearman], :key => true
        property :length, Integer
      end
    end
  end

  class ComparisonCorrelation
    include Correlation
    #storage_names[:user_rpt] = :comparison_correlations

#      belongs_to :subset_comparison, "SubsetComparison", :parent_key => [:id], :key => true,
#      :repository => repository(:nosology)

    def disease_name
      subset_comparison.disease.name
    end

    def disease_concept_id
      subset_comparison.disease_concept_id
    end
  end
end


/home/rpt/.gem/ruby/1.8/gems/dm-core-1.0.0/lib/dm-core/associations/relationship.rb:173:in `target_model':NameError: Cannot find the child_model ComparisonCorrelation for NOORM::SubsetComparison in comparison_correlations