I hereby claim:
- I am rtraborn on github.
- I am rtraborn (https://keybase.io/rtraborn) on keybase.
- I have a public key ASBRb-ZADvJMUhzrWlIalMkUHvevtqSHcsn8thqKGBi8UQo
To claim this, I am signing this object:
R. Taylor Raborn rtraborn
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| ### Running motif2meme.R | |
| > source("/path/to/motif2meme.R") | |
| > motif2meme("/path/to/motif/file/") |
rtraborn
/ figure_4.md
Last active
August 29, 2015 14:17
Frequency of various motif elements in proximal promoters of various plants
##These workflows analyze and visualize the frequency of various motif elements in the proximal promoters (and flanking regions) of Arabidopsis.
rtraborn
/ figure_3_graph.R
Last active
August 29, 2015 14:11
Figure 4: Validation of TSR Annotations
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| # Generating the figure showing the distribution between identified TSRs and TATA motifs | |
| # Written on 1/9/2015 | |
| #loading lattice | |
| library(lattice) | |
| #setting the working directory | |
| setwd("/DATA/GROUP/rtraborn/tsrchitect_test/") | |
| #reading the distribution file (created by closeestBed; see documentation) into R |
####This is Taylor's gist repo ### In general, I'll use this for code to generate draft figures and the figures themselves until. Other odds-and-ends that don't naturally fit into my github repo will go here also.