Created
May 4, 2014 14:56
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infinite loop when testing sage-patchbot with ticket 13282
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| Forcing sage-location, probably because a new package was installed. | |
| Updating various hardcoded paths... | |
| (Please wait at most a few minutes.) | |
| DO NOT INTERRUPT THIS. | |
| Done updating paths. | |
| Found package ccache in /scratch/sage/upstream/ccache-3.1.9.spkg | |
| Package ccache-3.1.9 is already installed. | |
| Use 'sage -f /scratch/sage/upstream/ccache-3.1.9.spkg' to force a reinstallation. | |
| --2014-05-04 08:27:25-- http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg | |
| Resolving coates.ma.ic.ac.uk (coates.ma.ic.ac.uk)... 155.198.35.88 | |
| Connecting to coates.ma.ic.ac.uk (coates.ma.ic.ac.uk)|155.198.35.88|:80... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 74478 (73K) [text/plain] | |
| Saving to: ‘/tmp/tmpKQrDny/grdb_polytopes-0.1.spkg’ | |
| 0K . 100% 109K=0.7s | |
| 2014-05-04 08:27:26 (109 KB/s) - ‘/tmp/tmpKQrDny/grdb_polytopes-0.1.spkg’ saved [74478/74478] | |
| abort: couldn't find mercurial libraries in [/usr/bin /scratch/sage/local/lib/python2.7/site-packages/Twisted-13.2.0-py2.7-linux-x86_64.egg /scratch/sage/local/lib/python2.7/site-packages/pytz-2013b-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/webassets-0.9-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Cython-0.20.1-py2.7-linux-x86_64.egg /scratch/sage/local/lib/python2.7/site-packages/SQLAlchemy-0.5.8-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Flask_OldSessions-0.10-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Jinja2-2.5.5-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/python_openid-2.2.5-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Sphinx-1.1.2-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Flask_Silk-0.2-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Flask_AutoIndex-0.5-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Pygments-1.3.1-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/zope.interface-4.0.5-py2.7-linux-x86_64.egg /scratch/sage/local/lib/python2.7/site-packages/itsdangerous-0.23-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Werkzeug-0.9.4-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Pillow-2.2.2-py2.7-linux-x86_64.egg /scratch/sage/local/lib/python2.7/site-packages/Flask_OpenID-1.2.1-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/pkgconfig-1.1.0-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/setuptools-2.0.1-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/speaklater-1.3-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Babel-1.3-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/tornado-3.1.1-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/Flask_Babel-0.9-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/sagenb-0.10.8.2-py2.7.egg /scratch/sage/local/lib/python2.7/site-packages/matplotlib-1.3.1-py2.7-linux-x86_64.egg /scratch/sage/local/lib/python2.7/site-packages/python_dateutil-2.2-py2.7.egg /scratch/sage/local/lib/python /scratch/sage/local/lib/python2.7 /scratch/sage/local/lib/python2.7/plat-x86_64-linux-gnu /scratch/sage/local/lib/python2.7/lib-tk /scratch/sage/local/lib/python2.7/lib-old /scratch/sage/local/lib/python2.7/lib-dynload /scratch/sage/local/lib/python2.7/site-packages] | |
| (check your install and PYTHONPATH) | |
| 255 | |
| = GRADED RING DATABASE POLYTOPES = | |
| == Description == | |
| Provides many of the databases detailed in the Graded Ring Database [http://grdb.lboro.ac.uk]. These are then made accessible through the `sage.geometry.lattice_polytopes` module. The databases are also available online at [http://magma.maths.usyd.edu.au/magma/download/db/]. | |
| == License == | |
| The databases made accessible by this package may be used subject to the following two conditions: | |
| (1) any academic paper or similar output resulting from research in which any of these databases were used must include citations to the appropriate papers as listed at [http://grdb.lboro.ac.uk/] | |
| (2) the mappings between IDs and polytopes provided by these databases MUST NOT be changed. | |
| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. | |
| == SPKG Maintainers == | |
| * Samuel Gonshaw <sjg10@imperial.ac.uk> | |
| * Tom Coates <t.coates@imperial.ac.uk> | |
| == Upstream Contact == | |
| See [http://magma.maths.usyd.edu.au/magma/download/db/] and [http://grdb.lboro.ac.uk] | |
| == Dependencies == | |
| == Special Update/Build Instructions == | |
| Requires trac ticket 13282 to be applied to sage in order to access the databases. This ticket provides the `sage.geometry.lattice_polytopes` module. | |
| Getting trusted author list... | |
| WARNING: Do not use this copy of sage while the patchbot is running. | |
| '/scratch/sage'/sage -i ccache | |
| git checkout patchbot/base | |
| git fetch git://github.com/sagemath/sage.git +master:patchbot/base_upstream | |
| Getting ticket list... | |
| ============================== 13282 ============================== | |
| Access to GRDB Fano polytopes | |
| score ((100,), 1008, -13282) | |
| REPORT | |
| {'base': '6.2.beta8', | |
| 'deps': [], | |
| 'git_base': '8be52e678f5af0e62794959b70b7cb8babe0a488', | |
| 'git_base_human': '6.1.1 + 0 commits', | |
| 'git_branch': u'u/tomc/ticket/13282', | |
| 'git_commit': '2b232633fbdc27c73f3eb77163217bbeda773338', | |
| 'git_log': ['2b23263 16023: remove deprecated keyword code', | |
| "01dc349 Merge branch 'u/rws/ticket/16023' of trac.sagemath.org:sage into tmp", | |
| 'f55df77 Updated Sage version to 6.2.beta8', | |
| '0a5f3eb Trac #15882: Implement a catalog for crystals', | |
| ... | |
| 'c1b3522 Trac #15836: BasisMatroid.circuits() returns a malformed SetSystem when called on the empty matroid', | |
| '8e01961 Trac #16151: Making BasisExchangeMatroid fool-proof with user input sanity checks', | |
| '19e832a Trac #12892: Move fibration methods to subclass of dominant morphisms', | |
| '1142feb Trac #12892: Reviewer changes to toric morphisms.', | |
| '78dc617 Trac #12892: Pull back toric divisors via toric morphisms', | |
| '7fb4df5 Trac #12892: Toric fibration fiber', | |
| '9aa485f Trac #12892: Toric fibration morphisms', | |
| 'fa26d97 Trac #14753: Revert ATLAS package', | |
| 'b1f08de Trac #13557: update the autotools spkg, add Texinfo', | |
| '7332219 Trac #13357: initial version'], | |
| 'git_merge': '2b232633fbdc27c73f3eb77163217bbeda773338', | |
| 'machine': ['debian', | |
| 'jessie/sid', | |
| 'x86_64', | |
| '3.13.0-24-generic', | |
| 'compute13dc0'], | |
| 'patchbot_version': '2.1.1.1', | |
| 'patches': [], | |
| 'plugins': (), | |
| 'spkgs': [u'http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg'], | |
| 'status': 'Pending', | |
| 'time': '2014-05-04 08:27:24 +0000', | |
| 'user': '3bdfd30d7c9d424e9902cf13ce925821'} | |
| 13282 Pending | |
| error | |
| 2014-05-04 08:27:25 +0000 | |
| Sage Patchbot 2.1.1.1 | |
| http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg | |
| ++++++++++ http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg ++++++++++ | |
| wget --progress=dot:mega -O /tmp/tmpKQrDny/grdb_polytopes-0.1.spkg http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg | |
| tar xf /tmp/tmpKQrDny/grdb_polytopes-0.1.spkg -C /tmp/tmpKQrDny | |
| Sha1 grdb_polytopes-0.1.spkg 57cfaa065154afe581048fa8b84b554df1682a9e | |
| Checking repo status. | |
| cd /tmp/tmpKQrDny/grdb_polytopes-0.1; hg diff; echo $? | |
| Comparing to previous spkg. | |
| Unable to locate existing package grdb_polytopes. | |
| -------------------- | |
| cat /tmp/tmpKQrDny/grdb_polytopes-0.1/SPKG.txt | |
| http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg -- 2 seconds | |
| http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg -- 2 seconds | |
| 2014-05-04 08:27:27 +0000 | |
| 2 seconds | |
| Reporting 13282 Spkg | |
| REPORT | |
| {'base': '6.2.beta8', | |
| 'deps': [], | |
| 'git_base': '8be52e678f5af0e62794959b70b7cb8babe0a488', | |
| 'git_base_human': '6.1.1 + 0 commits', | |
| 'git_branch': u'u/tomc/ticket/13282', | |
| 'git_commit': '2b232633fbdc27c73f3eb77163217bbeda773338', | |
| 'git_log': ['2b23263 16023: remove deprecated keyword code', | |
| "01dc349 Merge branch 'u/rws/ticket/16023' of trac.sagemath.org:sage into tmp", | |
| 'f55df77 Updated Sage version to 6.2.beta8', | |
| '0a5f3eb Trac #15882: Implement a catalog for crystals', | |
| ... | |
| 'c1b3522 Trac #15836: BasisMatroid.circuits() returns a malformed SetSystem when called on the empty matroid', | |
| "b1e7707 Trac #14695: Don't (re)run ranlib in sage-location", | |
| '202b2fd Trac #13942: Correct some wrong statements on the Magma interface in Sage', | |
| '24e16e7 Trac #16100: Keep going in doc errors', | |
| --2014-05-04 08:27:38-- http://coates.ma.ic.ac.uk/grdb_polytopes-0.1.spkg | |
| Resolving coates.ma.ic.ac.uk (coates.ma.ic.ac.uk)... 155.198.35.88 | |
| Connecting to coates.ma.ic.ac.uk (coates.ma.ic.ac.uk)|155.198.35.88|:80... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 74478 (73K) [text/plain] | |
| Saving to: ‘/tmp/tmpzM7TOQ/grdb_polytopes-0.1.spkg’ | |
| 0K . 100% 82.2K=0.9s | |
| 2014-05-04 08:27:39 (82.2 KB/s) - ‘/tmp/tmpzM7TOQ/grdb_polytopes-0.1.spkg’ saved [74478/74478] | |
| abort: couldn't find mercurial libraries in [/usr/bin ... |
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