ryan-williams/00-README.md

## 00-README.md

      
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              00-README.md
            
          
    Build TileDB-SOMA on EC2 Graviton (ARM) instance

Launch instance

Using launch_instance.py:
eli -a ami-0c29a2c5cf69b5a9c -i r7g.4xlarge
(AMI ami-0c29a2c5cf69b5a9c: "Canonical, Ubuntu, 24.04 LTS, arm64 noble image build on 2024-04-23")
Install system deps + TileDB-SOMA

wget https://gist.githubusercontent.com/ryan-williams/3bd494db77da4faa7b30e30d7bf58182/raw/e0309137e9f7d0b9a3ac18fac951ce40cd468815/init-graviton-ubuntu.sh
bash init-graviton-ubuntu.sh # pass "build=Debug" for debug build
# …
# real	24m30.800s
# user	105m52.304s
# sys	6m15.576s

  
## init-graviton-ubuntu.sh
#!/usr/bin/env bash

set -ex

sudo apt-get update -y
sudo apt-get install -y \
     cmake \
     curl \
     g++ \
     libhdf5-dev \
     make \
     ninja-build \
     pkg-config \
     python3-dev \
     python3-venv \
     tar \
     unzip \
     zip
export VCPKG_FORCE_SYSTEM_BINARIES=1  # https://github.com/microsoft/vcpkg/issues/35066
git clone https://github.com/single-cell-data/TileDB-SOMA
cd TileDB-SOMA
python3 -m venv .venv
. .venv/bin/activate
time make install "$@"
	#!/usr/bin/env bash

	set -ex

	sudo apt-get update -y
	sudo apt-get install -y \
	cmake \
	curl \
	g++ \
	libhdf5-dev \
	make \
	ninja-build \
	pkg-config \
	python3-dev \
	python3-venv \
	tar \
	unzip \
	zip
	export VCPKG_FORCE_SYSTEM_BINARIES=1 # https://github.com/microsoft/vcpkg/issues/35066
	git clone https://github.com/single-cell-data/TileDB-SOMA
	cd TileDB-SOMA
	python3 -m venv .venv
	. .venv/bin/activate
	time make install "$@"