Created
October 22, 2014 15:21
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example of using custom mmap allocator in R
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#include <sys/types.h> | |
#include <sys/stat.h> | |
#include <sys/mman.h> | |
#include <unistd.h> | |
#include <fcntl.h> | |
#include <Rinternals.h> | |
#include <R_ext/Rallocators.h> | |
static void *mmap_alloc(R_allocator_t *allocator, size_t length) { | |
int fd = open((char*) allocator->data, O_RDWR|O_CREAT, 0666); | |
if (fd < 0) return 0; | |
/* some OSes require the file to actually exist with the needed size - ensure that */ | |
lseek(fd, length, SEEK_SET); | |
if (write(fd, "", 1)) {} | |
void *mem = mmap(0, length, PROT_READ|PROT_WRITE, MAP_SHARED, fd, 0); | |
close(fd); | |
Rprintf("mmap allocated '%s'\n", (char*) allocator->data); | |
allocator->data = mem ? (((char*)mem) + length) : 0; | |
return mem; | |
} | |
static void mmap_free(R_allocator_t *allocator, void *mem) { | |
Rprintf("mmap freed %p\n", mem); | |
munmap(mem, allocator->data ? (((char*)allocator->data) - ((char*) mem)) : 0); | |
} | |
SEXP mmap_vector(SEXP template, SEXP sFile, SEXP length) { | |
R_allocator_t allocator = { mmap_alloc, mmap_free, 0, 0 }; | |
allocator.data = (void*) CHAR(STRING_ELT(sFile, 0)); | |
return Rf_allocVector3(TYPEOF(template), asInteger(length), &allocator); | |
} | |
### v = .Call(1L, "test.bin", 1e4); v[1:10]=1:10; rm(v); gc() |
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