Christian Dallago sacdallago

## Readme.md

      
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                sacdallago
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              July 12, 2020 15:46
            
              
                cd-hit clusters to CSV of representatives
              
          
    First you need to run clstr2txt (it comes with cd-hit). E.g.:
clstr2txt.pl BindingDBTargetSequences_100.fa.clstr > BindingDBTargetSequences_100_clusters.txt

Then, run the python code below, but change the variables (input and output file names):


## index.html
<!-- Code from d3-graph-gallery.com -->
<!DOCTYPE html>
<meta charset="utf-8">

<!-- Load d3.js -->
<script src="http://d3js.org/d3.v4.js"></script>

<!-- Create a div where the graph will take place -->
<div id="my_dataviz"></div>

## README.md

      
              3 files
            
          
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                sacdallago
                / README.md
            
            
              Last active
              March 19, 2019 07:33
            
              
                Hippie entry name to uniprot ID
              
          
    Prerequisites:

Node.js has to be installed. Also parsjs (get it via npm i -g parsjs).
Steps:


Download latest hippie release (the TAB version)
Run parsjs -n -s hippie_current hippie_current.txt
Run node unique.js
Copy the content of current_hippie_identifiers.txt on the uniprot mapping service (https://www.uniprot.org/mapping/)


## list_to_convert_files
#!/bin/bash

find . -type f -name '*.trec' -print0 | while IFS= read -r -d '' file; do
       echo $file
done > files_to_convert

## list_converted_files
#!/bin/bash

find . -type f -name '*_converted.avi' -print0 | while IFS= read -r -d '' file; do
       echo $file
done > files_converted

## convert_list_of_files
#!/bin/bash

while read i; do
	echo "------------"
	echo $i
       	ffmpeg -loglevel error -hwaccel vdpau -n -i "$i" -c:a copy -c:v copy "${i/.trec}_converted.avi"
	echo "------------"
done < ./files_to_convert

## Prolog #16 solver
% Compute power of a number
power(1,0,_).
power(X,Y,C):- X1 is X+X, Y1 is Y-1, powerUp(X1,Y1,C).

powerUp(X,1,X).
powerUp(X,Y,C) :- X1 is X+X, Y1 is Y-1, powerUp(X1,Y1,C).


% Sum elements in list.
sum([],0).

## Prolog Project
% Exercise one, write code to veryfiy second list is duplicate of first and presents same char at end of first list twice.
% ---------------------------------------------------------------------------------------------------------------FINISHED.

duplicar_ultimo([],[]).
duplicar_ultimo(L1,L2):-duplicar_ultimo_accessory(L1,L2).

duplicar_ultimo_accessory([X],[X,X]).
duplicar_ultimo_accessory([X|L1],[X|L2]):-duplicar_ultimo_accessory(L1,L2).
	<!-- Code from d3-graph-gallery.com -->
	<!DOCTYPE html>
	<meta charset="utf-8">

	<!-- Load d3.js -->
	<script src="http://d3js.org/d3.v4.js"></script>

	<!-- Create a div where the graph will take place -->
	<div id="my_dataviz"></div>
	#!/bin/bash

	find . -type f -name '*.trec' -print0 \| while IFS= read -r -d '' file; do
	echo $file
	done > files_to_convert
	#!/bin/bash

	find . -type f -name '*_converted.avi' -print0 \| while IFS= read -r -d '' file; do
	echo $file
	done > files_converted
	#!/bin/bash

	while read i; do
	echo "------------"
	echo $i
	ffmpeg -loglevel error -hwaccel vdpau -n -i "$i" -c:a copy -c:v copy "${i/.trec}_converted.avi"
	echo "------------"
	done < ./files_to_convert
	% Compute power of a number
	power(1,0,_).
	power(X,Y,C):- X1 is X+X, Y1 is Y-1, powerUp(X1,Y1,C).

	powerUp(X,1,X).
	powerUp(X,Y,C) :- X1 is X+X, Y1 is Y-1, powerUp(X1,Y1,C).


	% Sum elements in list.
	sum([],0).
	% Exercise one, write code to veryfiy second list is duplicate of first and presents same char at end of first list twice.
	% ---------------------------------------------------------------------------------------------------------------FINISHED.

	duplicar_ultimo([],[]).
	duplicar_ultimo(L1,L2):-duplicar_ultimo_accessory(L1,L2).

	duplicar_ultimo_accessory([X],[X,X]).
	duplicar_ultimo_accessory([X\|L1],[X\|L2]):-duplicar_ultimo_accessory(L1,L2).