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sacundim/covariants-count.sh

Created December 9, 2021 04:32
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jq-based script to count sequences in Covariants.org
Raw
covariants-count.sh
#!/usr/bin/env bash
#
# Fetch data from Covariants.org and count how many sequences
URL='https://raw.githubusercontent.com/hodcroftlab/covariants/master/web/data/perCountryData.json'
COUNTRY="${1?"No country given"}"
curl --compressed "${URL}" | jq "[
.regions
| .[]
| .distributions
| .[]
| select(.country==\"${COUNTRY}\")
| .distribution
| .[]
| .total_sequences
]
| add"
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