Nafis Sadat sadatnfs

## init.vim

call plug#begin()

Plug 'brooth/far.vim'
Plug 'SirVer/ultisnips'
Plug 'honza/vim-snippets'

Plug 'scrooloose/nerdtree'  " file list
Plug 'majutsushi/tagbar'  " show tags in a bar (functions etc) for easy browsing
Plug 'vim-airline/vim-airline'  " make statusline awesome

## quick_r_build.sh
echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
echo "deb https://apt.repos.intel.com/tbb all main" > /etc/apt/sources.list.d/intel-tbb.list && \
echo "deb https://apt.repos.intel.com/daal all main" > /etc/apt/sources.list.d/intel-daal.list && \
echo "deb https://apt.repos.intel.com/mpi all main" > /etc/apt/sources.list.d/intel-mpi.list && \
apt-get update


## Set a bunch of envvars (perhaps throw these in your bashrc)
MKL_LIB_PATH="/opt/intel/compilers_and_libraries/linux/mkl/lib/intel64_lin"  \
MKL="-L/opt/intel/compilers_and_libraries/linux/mkl/lib/intel64_lin -Wl,--no-as-needed -lmkl_gf_lp64 -Wl,--start-group -lmkl_gnu_thread -lmkl_cdft_core -lmkl_core -Wl,--end-group -fopenmp -ldl -lpthread -lm"  \

## pymc3_examples_1.ipynb

      
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                sadatnfs
                / pymc3_examples_1.ipynb
            
            
              Last active
              April 29, 2019 20:15
            
              
                PyMC3 examples - 1
              
          
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## trying_PyMC4_unsuccessfully.ipynb

      
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                sadatnfs
                / trying_PyMC4_unsuccessfully.ipynb
            
            
              Created
              November 26, 2018 16:28
            
              
                Attempting to make PyMC4 work
              
          
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## tfp_linear_model_testing_Random.ipynb

      
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                sadatnfs
                / tfp_linear_model_testing_Random.ipynb
            
            
              Created
              September 12, 2018 17:49
            
              
                Fitting model in TFP where I try to 'randomize' the fixed coefficients
              
          
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## tfp_linear_model_testing_Fixed.ipynb

      
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                sadatnfs
                / tfp_linear_model_testing_Fixed.ipynb
            
            
              Created
              September 12, 2018 17:48
            
              
                Fitting model in TFP with fixed effect coefficient
              
          
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## m3_gdp_linear_model_TFP.ipynb

      
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                sadatnfs
                / m3_gdp_linear_model_TFP.ipynb
            
            
              Last active
              August 28, 2018 21:26
            
              
                Fitting a simple random intercept model on GDP data using TFP (following the LME example on TFP page), using both iterations and convergence
              
          
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## m2_bayesian_reg_pyro.ipynb

      
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                sadatnfs
                / m2_bayesian_reg_pyro.ipynb
            
            
              Created
              August 28, 2018 21:21
            
              
                Simple Bayesian Regression example using Pyro
              
          
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## m1_bayesian_reg_tfp.ipynb

      
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                sadatnfs
                / m1_bayesian_reg_tfp.ipynb
            
            
              Last active
              August 28, 2018 21:25
            
              
                Fitting a simple random intercept model on GDP data using TFP (following the radon example on TFP page)
              
          
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## SS_breaker.r
## this script can be used to run really large models easily in order to test limits in SuiteSparse, Matrix, TMB, and INLA
## it loads simulated data created over all africa and all years

#############################################
## setup the environment for singularity R ##
#############################################

## Set core_repo location and tmb_repo loc
core_repo <- sprintf('/share/code/geospatial/lbd_core/')
tmb_repo  <- sprintf('/home/j/temp/azimmer/suitesparse_overloader')

	call plug#begin()

	Plug 'brooth/far.vim'
	Plug 'SirVer/ultisnips'
	Plug 'honza/vim-snippets'

	Plug 'scrooloose/nerdtree' " file list
	Plug 'majutsushi/tagbar' " show tags in a bar (functions etc) for easy browsing
	Plug 'vim-airline/vim-airline' " make statusline awesome
	echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
	echo "deb https://apt.repos.intel.com/tbb all main" > /etc/apt/sources.list.d/intel-tbb.list && \
	echo "deb https://apt.repos.intel.com/daal all main" > /etc/apt/sources.list.d/intel-daal.list && \
	echo "deb https://apt.repos.intel.com/mpi all main" > /etc/apt/sources.list.d/intel-mpi.list && \
	apt-get update


	## Set a bunch of envvars (perhaps throw these in your bashrc)
	MKL_LIB_PATH="/opt/intel/compilers_and_libraries/linux/mkl/lib/intel64_lin" \
	MKL="-L/opt/intel/compilers_and_libraries/linux/mkl/lib/intel64_lin -Wl,--no-as-needed -lmkl_gf_lp64 -Wl,--start-group -lmkl_gnu_thread -lmkl_cdft_core -lmkl_core -Wl,--end-group -fopenmp -ldl -lpthread -lm" \
	## this script can be used to run really large models easily in order to test limits in SuiteSparse, Matrix, TMB, and INLA
	## it loads simulated data created over all africa and all years

	#############################################
	## setup the environment for singularity R ##
	#############################################

	## Set core_repo location and tmb_repo loc
	core_repo <- sprintf('/share/code/geospatial/lbd_core/')
	tmb_repo <- sprintf('/home/j/temp/azimmer/suitesparse_overloader')