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environment.yaml for Conda installation to be used with Nanopore cDNA expression profiling tutorial
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| channels: | |
| - bioconda | |
| - conda-forge | |
| - r | |
| dependencies: | |
| - snakemake-minimal =5.2.4 | |
| - python =3.6 | |
| - samtools =1.9 | |
| - minimap2 =2.9 | |
| - r-brew | |
| - r-cli | |
| - r-catools | |
| - r-devtools | |
| - r-digest | |
| - r-dplyr | |
| - r-essentials | |
| - r-ggplot2 | |
| - r-openssl | |
| - r-plyr | |
| - r-rcolorbrewer | |
| - r-roxygen2 | |
| - r-rstudioapi | |
| - r =3.5.1 | |
| - r-rmarkdown | |
| - r-tufte | |
| - r-xfun | |
| - r-xlsx | |
| - r-yaml | |
| - bioconductor-deseq2 | |
| - bioconductor-pcamethods | |
| - bioconductor-rsubread | |
| - bioconductor-shortread | |
| - rstudio | |
| - graphviz | |
| - nbconvert | |
| - perl =5.26.2 | |
| - openjdk | |
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