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saketkc/init_rapids_ai_colab_step2_minimal.sh

Last active June 26, 2020 03:11
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init_rapids_ai_colab_step2_minimal.sh
#!/bin/bash
set -eox pipefail
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --add channels nvidia
conda config --add channels rapidsai
pip install git+https://github.com/dask/dask.git
pip install git+https://github.com/dask/distributed.git
conda install -y cuml cugraph louvain scanpy cudf cupy umap-learn scikit-learn numba>=0.48* leidenalg r-seurat r-reticulate
wget -c https://raw.githubusercontent.com/clara-parabricks/rapids-single-cell-examples/master/notebooks/rapids_scanpy_funcs.py
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