Created
May 10, 2013 16:55
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program gc; | |
{$mode objfpc} // Do not forget this ever | |
uses | |
Sysutils; | |
var | |
FastaFile: TextFile; | |
CurrentLine: String; | |
GCCount: Integer; | |
ATCount: Integer; | |
TotalBaseCount: Integer; | |
i: Integer; | |
c: Char; | |
GCFraction: Single; | |
begin | |
GCCount := 0; | |
TotalBaseCount := 0; | |
AssignFile(FastaFile, 'Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa'); | |
{$I+} //use exceptions | |
try | |
Reset(FastaFile); | |
repeat | |
Readln(FastaFile, CurrentLine); | |
for i := 0 to length(CurrentLine) - 1 do | |
begin | |
c := CurrentLine[i]; | |
if c in ['A', 'T'] then | |
inc(ATCount) | |
else if c in ['G', 'C'] then | |
begin | |
inc(GCCount); | |
end; | |
end; | |
until(EOF(FastaFile)); | |
CloseFile(FastaFile); | |
except | |
on E: EInOutError do | |
begin | |
Writeln('File handling error occurred. Details: '+E.ClassName+'/'+E.Message); | |
end; | |
end; | |
TotalBaseCount := GCCount + ATCount; | |
GCFraction := GCCount / TotalBaseCount; | |
Writeln(FormatFloat('00.0000', GCFraction * 100)); | |
end. |
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