samuell

# -*- coding: utf-8 -*-
"""
    Animated 3D sinc function
"""

from pyqtgraph.Qt import QtCore, QtGui
import pyqtgraph.opengl as gl
import pyqtgraph as pg
import numpy as np
import sys

samuell

// Workflow written in SciPipe.
// For more information about SciPipe, see: http://scipipe.org
package main

import sp "github.com/scipipe/scipipe"

func main() {
	// Create a workflow, using 4 cpu cores
	wf := sp.NewWorkflow("my_workflow", 4)

samuell

import luigi
import sciluigi as sl

# ... snip ...

class GlobFiles(sl.Task):
    globdir = luigi.Parameter()

    in_depend = None

samuell

#!/bin/bash
# --------------------------------------------------------------------------------
# This script uses the coverlet tool to generate code coverage statistics about the tests
# For more info about coverlet: https://github.com/tonerdo/coverlet
# Author: Samuel Lampa
# --------------------------------------------------------------------------------
./bin/Debug/netcoreapp2.2/MyApp.Tests.dll:
        echo "Installing any uninstalled dependencies, by executing dotnet restore ..."
        dotnet restore
        dotnet build

samuell

package main

// Source code for this experiment: https://github.com/samuell/gormula

import (
	"fmt"
	"math"
)

func main() {

samuell

monthlyPaymentUSD := Mul(
	Div(
		Mul(
			Div(Val(rate),
				Val(1200.0)),
			Exp(
				Add(
					Val(1.0),
					Div(
						Val(rate),

samuell

digraph "DNA Base Complement Workflow" {
  rankdir=LR;
  graph [fontname="Arial",fontsize=13,color="#384A52",fontcolor="#384A52"];
  node  [fontname="Arial",fontsize=11,color="#384A52",fontcolor="#384A52",fillcolor="#EFF2F5",shape=box,style=filled];
  edge  [fontname="Arial",fontsize=9, color="#384A52",fontcolor="#384A52"];
  "Base Complement" [shape=box];
  "Make DNA" [shape=box];
  "Reverse" [shape=box];
  "Base Complement" -> "Reverse" [taillabel="compl", headlabel="in"];
  "Make DNA" -> "Base Complement" [taillabel="dna", headlabel="in"];

samuell

digraph "resequencing_workflow" {
  rankdir=LR;
  graph [fontname="Arial",fontsize=13,color="#384A52",fontcolor="#384A52"];
  node  [fontname="Arial",fontsize=11,color="#384A52",fontcolor="#384A52",fillcolor="#EFF2F5",shape=box,style=filled];
  edge  [fontname="Arial",fontsize=9, color="#384A52",fontcolor="#384A52"];
  "bwa_aln_NA06984_1" [shape=box];
  "bwa_aln_NA06984_2" [shape=box];
  "bwa_aln_NA12489_1" [shape=box];
  "bwa_aln_NA12489_2" [shape=box];
  "download_fastq_NA06984_1" [shape=box];

samuell

package main

import (
    sp "github.com/scipipe/scipipe"
    spc "github.com/scipipe/scipipe/components"
)

func main() {
    wf := sp.NewWorkflow("example_workflow", 4)

samuell

#!/bin/bash
# ---------------------------------------------------------------------
# Generate test coverage for .Net core 2 projects.
# ---------------------------------------------------------------------
# Author: Samuel Lampa
#
# This script is supposed to be run in a Windows bash-environment such
# as MSYS2 (See this post for a guide on how to set up one:
# https://bionics.it/posts/linux-like-non-wsl-terminal-env-on-windows)
#