sanity / PolynomialFitter.java

Created November 13, 2009

/***************************************************************************
 *   Copyright (C) 2009 by Paul Lutus, Ian Clarke                          *
 *   lutusp@arachnoid.com, ian.clarke@gmail.com                            *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU General Public License     *
 *   along with this program; if not, write to the                         *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
 
import java.util.ArrayList;
import java.util.List;
 
/**
 * A class to fit a polynomial to a (potentially very large) dataset.
 * 
 * @author Paul Lutus <lutusp@arachnoid.com>
 * @author Ian Clarke <ian.clarke@gmail.com>
 * 
 */
 
/*
 * Changelog:
 * 20100130: Add note about relicensing
 * 20091114: Modify so that points can be added after the curve is
 *           created, also some other minor fixes 
 * 20091113: Extensively modified by Ian Clarke, main changes:
 *     - Should now be able to handle extremely large datasets
 *     - Use generic Java collections classes and interfaces 
 *       where possible
 *     - Data can be fed to the fitter as it is available, rather
 *       than all at once
 * 
 * The code that this is based on was obtained from: http://arachnoid.com/polysolve
 * 
 * Note: I (Ian Clarke) am happy to release this code under a more liberal 
 * license such as the LGPL, however Paul Lutus (the primary author) refuses
 * to do this on the grounds that the LGPL is not an open source license.  
 * If you want to try to explain to him that the LGPL is indeed an open 
 * source license, good luck - it's like talking to a brick wall.
 */
public class PolynomialFitter {
 
	private final int p, rs;
 
	private long n = 0;
 
	private final double[][] m;
 
	private final double[] mpc;
	/**
	 * @param degree
	 *            The degree of the polynomial to be fit to the data
	 */
	public PolynomialFitter(final int degree) {
		assert degree > 0;
		p = degree + 1;
		rs = 2 * p - 1;
		m = new double[p][p + 1];
		mpc = new double[rs];
	}
 
	/**
	 * Add a point to the set of points that the polynomial must be fit to
	 * 
	 * @param x
	 *            The x coordinate of the point
	 * @param y
	 *            The y coordinate of the point
	 */
	public void addPoint(final double x, final double y) {
		assert !Double.isInfinite(x) && !Double.isNaN(x);
		assert !Double.isInfinite(y) && !Double.isNaN(y);
		n++;
		// process precalculation array
		for (int r = 1; r < rs; r++) {
			mpc[r] += Math.pow(x, r);
		}
		// process RH column cells
		m[0][p] += y;
		for (int r = 1; r < p; r++) {
			m[r][p] += Math.pow(x, r) * y;
		}
	}
 
	/**
	 * Returns a polynomial that seeks to minimize the square of the total
	 * distance between the set of points and the polynomial.
	 * 
	 * @return A polynomial
	 */
	public Polynomial getBestFit() {
		final double[] mpcClone = mpc.clone();
		final double[][] mClone = new double[m.length][];
		for (int x = 0; x < mClone.length; x++) {
			mClone[x] = m[x].clone();
		}
 
		mpcClone[0] += n;
		// populate square matrix section
		for (int r = 0; r < p; r++) {
			for (int c = 0; c < p; c++) {
				mClone[r][c] = mpcClone[r + c];
			}
		}
		gj_echelonize(mClone);
		final Polynomial result = new Polynomial(p);
		for (int j = 0; j < p; j++) {
			result.add(j, mClone[j][p]);
		}
		return result;
	}
	private double fx(final double x, final List<Double> terms) {
		double a = 0;
		int e = 0;
		for (final double i : terms) {
			a += i * Math.pow(x, e);
			e++;
		}
		return a;
	}
	private void gj_divide(final double[][] A, final int i, final int j, final int m) {
		for (int q = j + 1; q < m; q++) {
			A[i][q] /= A[i][j];
		}
		A[i][j] = 1;
	}
 
	private void gj_echelonize(final double[][] A) {
		final int n = A.length;
		final int m = A[0].length;
		int i = 0;
		int j = 0;
		while (i < n && j < m) {
			// look for a non-zero entry in col j at or below row i
			int k = i;
			while (k < n && A[k][j] == 0) {
				k++;
			}
			// if such an entry is found at row k
			if (k < n) {
				// if k is not i, then swap row i with row k
				if (k != i) {
					gj_swap(A, i, j);
				}
				// if A[i][j] is not 1, then divide row i by A[i][j]
				if (A[i][j] != 1) {
					gj_divide(A, i, j, m);
				}
				// eliminate all other non-zero entries from col j by
				// subtracting from each
				// row (other than i) an appropriate multiple of row i
				gj_eliminate(A, i, j, n, m);
				i++;
			}
			j++;
		}
	}
 
	private void gj_eliminate(final double[][] A, final int i, final int j, final int n, final int m) {
		for (int k = 0; k < n; k++) {
			if (k != i && A[k][j] != 0) {
				for (int q = j + 1; q < m; q++) {
					A[k][q] -= A[k][j] * A[i][q];
				}
				A[k][j] = 0;
			}
		}
	}
 
	private void gj_swap(final double[][] A, final int i, final int j) {
		double temp[];
		temp = A[i];
		A[i] = A[j];
		A[j] = temp;
	}
 
 
	public static class Polynomial extends ArrayList<Double> {
		private static final long serialVersionUID = 1692843494322684190L;
 
		public Polynomial(final int p) {
			super(p);
		}
 
		public double getY(final double x) {
			double ret = 0;
			for (int p=0; p<size(); p++) {
				ret += get(p)*(Math.pow(x, p));
			}
			return ret;
		}
 
		@Override
		public String toString() {
			final StringBuilder ret = new StringBuilder();
			for (int x = size() - 1; x > -1; x--) {
				ret.append(get(x) + (x > 0 ? "x^" + x + " + " : ""));
			}
			return ret.toString();
		}
	}
}