sanromd

name: clawpack
channels:
- conda-forge
dependencies:
- python=3.11
- mpich
- numpy
- scipy
- matplotlib
- vtk

sanromd

# This script is a work-in-progress. THe goal is to help others install a 
# numerical platform for analytics and simulation.
#
# It will install the libraries needed to work with mpich in python. It also 
# compiles OpenBLAS and uses it to build the latest release of numpy and scipy. 
# ------------------------------------------------------------------------------ #
# This version uses github and bitbucket sources, alternatively you may select
# non-git sources, supported via wget
# ------------------------------------------------------------------------------ #
# ------------------------------------------------------------------------------ #

sanromd

setting up an hpc environment

preamble

create a sandbox, a place to store sources, compile, and develop

mkdir -p <path to sandbox>\opt\src

sanromd

#!/usr/bin/python2


# Copyright (C) 2016 Sixten Bergman
# License WTFPL
#
# This program is free software. It comes without any warranty, to the extent
# permitted by applicable law. 
# You can redistribute it and/or modify it under the terms of the Do What The
# Fuck You Want To Public License, Version 2, as published by Sam Hocevar. See

sanromd

#!/usr/bin/env python
# encoding: utf-8

import numpy as np
from mpi4py import MPI
from petsc4py import PETSc
import os
timeVec1 = PETSc.Vec().createWithArray([0])
timeVec2 = PETSc.Vec().createWithArray([0])
timeVec3 = PETSc.Vec().createWithArray([0])

sanromd

from clawpack.pyclaw import Solution
import matplotlib as mpl
mpl.use('Agg')
import matplotlib.pyplot as plt
import glob
import os
visdir = './_ntf'

def plane_cut(path='./output',cutplane='z',qn=1,outdir='results',saveq=False,saveplot=False,splitall=False,planecutplot=False):
    if not os.path.exists(os.path.join(path,outdir)):

sanromd

#!/usr/bin/env bash
#
# @ job_name            = test_pyclaw_convergence
# @ job_type            = bluegene
# @ output              = ./$(job_name)_$(jobid).out
# @ error               = ./$(job_name)_$(jobid).err
# @ environment         = COPY_ALL; 
# @ wall_clock_limit    = 24:00:00,24:00:00
# @ notification        = always
# @ bg_size             = 512

sanromd

#!/usr/bin/env python
# This code is originally taken from
# http://matplotlib.sourceforge.net/mpl_examples/pylab_examples/table_demo.py
# It is modified here to generate the required plot.
# This code was originally developed by Amal AlGhamdi

import matplotlib
from  matplotlib import pyplot
import os
from pylab import *

sanromd

import sys
import os
from glob import glob
import pickle


def xmdf_write(path,pkl_base='claw.pkl',ptc_base='claw.ptc',xmf_base='claw.meta',debug=False):
    pkl_file_name = glob(os.path.join(path,'*.pkl*'))
    if debug:
        print pkl_file_name

sanromd

# This is script version 3.0 - HPC & PyClaw in Mac OSX
# ------------------------------------------------------------------------------ #
# This version uses github and bitbucket sources
# ------------------------------------------------------------------------------ #
# ------------------------------------------------------------------------------ #

#!/bin/bash -x
echo -e "\n**************************************************************"
echo "Build a HPC system in MacOSX"
echo "**************************************************************"