output on "cmake -DENABLE_TESTING=ON"

gistfile1.txt

sanuj@sanuj-VAIO:~/git-reps/shogun/build-debug$ cmake -DENABLE_TESTING=ON ..
-- Could NOT find CCache (missing:  CCACHE) 
-- Using system's malloc
-- Could NOT find MOSEK (missing:  MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY) 
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find ATLAS (missing:  ATLAS_INCLUDES) 
-- Could NOT find GLPK (missing:  GLPK_LIBRARY GLPK_INCLUDE_DIR GLPK_PROPER_VERSION_FOUND) 
-- Could NOT find CPLEX (missing:  CPLEX_LIBRARY CPLEX_INCLUDE_DIR) 
-- Could NOT find Eigen3 (missing:  EIGEN_INCLUDE_DIR) (Required is at least version "3.1.2")
-- Could NOT find OPENCL (missing:  OPENCL_LIBRARY OPENCL_INCLUDE_DIR) 
-- Could NOT find ViennaCL (missing:  VIENNACL_INCLUDE_DIR OPENCL_INCLUDE_DIRS OPENCL_LIBRARIES) (Required is at least version "1.5.0")
-- checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9'
-- Could NOT find NLOPT (missing:  NLOPT_LIBRARY NLOPT_INCLUDE_DIR) 
-- Could NOT find LPSOLVE (missing:  LPSOLVE_LIBRARIES LPSOLVE_INCLUDE_DIR) 
-- Could NOT find ColPack (missing:  COLPACK_LIBRARIES COLPACK_LIBRARY_DIR COLPACK_INCLUDE_DIR) 
-- Could NOT find ARPREC (missing:  ARPREC_LIBRARIES ARPREC_INCLUDE_DIR) 
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11'
-- Could NOT find LibXml2 (missing:  LIBXML2_LIBRARIES LIBXML2_INCLUDE_DIR) 
-- Could NOT find CURL (missing:  CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Could NOT find BZip2 (missing:  BZIP2_LIBRARIES BZIP2_INCLUDE_DIR) 
-- Could NOT find LibLZMA (missing:  LIBLZMA_INCLUDE_DIR LIBLZMA_LIBRARY LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET) 
-- Could NOT find SNAPPY (missing:  SNAPPY_LIBRARIES SNAPPY_INCLUDE_DIR) 
-- Lzo includes and libraries NOT found. 
-- Spinlock support found
-- Could NOT find PROTOBUF (missing:  PROTOBUF_LIBRARY PROTOBUF_INCLUDE_DIR) 
-- NO supported backend(s) for linear algebra libraries found
-- ===================================================================================================================
-- Summary of Configuration Variables
-- 
-- The following OPTIONAL packages have been found:

 * GDB
 * OpenMP
 * BLAS
 * LAPACK
 * CBLAS
 * HDF5
 * ZLIB
 * Spinlock
 * Threads
 * Jinja2

-- The following REQUIRED packages have been found:

 * SWIG (required version >= 2.0.4)
 * PythonLibs
 * PythonInterp
 * NumPy

-- The following OPTIONAL packages have not been found:

 * CCache
 * Mosek
 * Atlas
 * GLPK
 * CPLEX
 * ARPACK
 * Eigen3 (required version >= 3.1.2)
 * ViennaCL (required version >= 1.5.0)
 * NLopt
 * LpSolve
 * ColPack
 * ARPREC
 * Doxygen
 * LibXml2
 * CURL
 * BZip2
 * LibLZMA
 * SNAPPY
 * LZO
 * Protobuf

-- The following REQUIRED packages have not been found:

 * OpenCL

-- ===================================================================================================================
-- Enabled Integration
--   OpenCV Integration is OFF 	 - enable with -DOpenCV=ON
-- ===================================================================================================================
-- Enabled Interfaces
--   libshogun is ON
--   python modular is ON
--   octave modular is OFF 	 - enable with -DOctaveModular=ON
--   java modular is OFF 	 - enable with -DJavaModular=ON
--   perl modular is OFF 	 - enable with -DPerlModular=ON
--   ruby modular is OFF 	 - enable with -DRubyModular=ON
--   csharp modular is OFF 	 - enable with -DCSharpModular=ON
--   R modular is OFF 		 - enable with -DRModular=ON
--   lua modular is OFF 	 - enable with -DLuaModular=ON
-- 
-- Enabled legacy interfaces
--   cmdline static is OFF 	 - enable with -DCmdLineStatic=ON
--   python static is OFF 	 - enable with -DPythonStatic=ON
--   octave static is OFF 	 - enable with -DOctaveStatic=ON
--   matlab static is OFF 	 - enable with -DMatlabStatic=ON
--   R static is OFF 		 - enable with -DRStatic=ON
-- ===================================================================================================================
-- To compile shogun type
--   make
-- 
-- To install shogun to /install type
--   make install
-- 
-- or to install to a custom directory
--   make install DESTDIR=/my/special/path
--   (or rerun cmake with -DCMAKE_INSTALL_PREFIX=/my/special/path) to just change the prefix
-- ===================================================================================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/sanuj/git-reps/shogun

Hi, I am working on PSI project (https://github.com/psi-project/server) to extend its functions to Shogun toolkit. However, I occur a lot of issues when install the Shogun with Java modular on Amazon Linux AMI (amazon ec2)

Firstly, I have the same issues that required OpenCL package can't bee found when execute 'cmake -DJavaModular=ON ..'.

-- Summary of Configuration Variables

-- The following OPTIONAL packages have been found:

• OpenMP
• Spinlock
• Threads

-- The following REQUIRED packages have been found:

• SWIG (required version >= 2.0.4)
• PythonInterp
• Java
• JNI

-- The following OPTIONAL packages have not been found:

• CCache
• GDB
• Mosek
• BLAS
• LAPACK
• GLPK
• CPLEX
• ARPACK
• Eigen3 (required version >= 3.1.2)
• ViennaCL (required version >= 1.5.0)
• NLopt
• LpSolve
• ColPack
• ARPREC
• Doxygen
• LibXml2
• HDF5
• CURL
• ZLIB
• BZip2
• LibLZMA
• SNAPPY
• LZO
• Protobuf

-- The following REQUIRED packages have not been found:

• OpenCL

And when execute 'make', there are some Class can't find. Such as:
[ 89%] Generating preprocessor_pca_modular.class
/home/ec2-user/shogun/examples/undocumented/java_modular/preprocessor_pca_modular.java:17: error: cannot find symbol
PCA preproc = new PCA();
^
symbol: class PCA
location: class preprocessor_pca_modular

I am not sure whether the error is related with absence packages.

Could you please give me some advices on installing the shogun?

Install all the required packages. Worked for me.