Missing SWIG when installing Colabfold on new cluster

easybuild-AlphaFold-2.3.4-20230714.033822.KREcM

== 2023-07-14 03:38:22,491 easyblock.py:313 INFO This is EasyBuild 4.8.0 (framework: 4.8.0, easyblocks: 4.8.0) on host hx1-d09-gpu-01.
== 2023-07-14 03:38:22,491 easyblock.py:319 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/gpfs/easybuild/dev/software/EasyBuild/4.8.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/pythonbundle.py)
== 2023-07-14 03:38:22,491 easyblock.py:1040 INFO Build dir set to /dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold
== 2023-07-14 03:38:22,491 easyblock.py:1097 INFO Software install dir set to /gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold
== 2023-07-14 03:38:22,491 easyblock.py:1102 INFO Module install dir set to /gpfs/easybuild/dev/modules/all
== 2023-07-14 03:38:22,491 easyblock.py:288 INFO Init completed for application name AlphaFold version 2.3.4
== 2023-07-14 03:38:22,491 easyconfig.py:464 INFO Performing quick parse to check for valid easyconfig file...
== 2023-07-14 03:38:22,493 environment.py:93 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1')
== 2023-07-14 03:38:22,493 environment.py:93 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1')
== 2023-07-14 03:38:22,493 environment.py:93 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no')
== 2023-07-14 03:38:22,493 environment.py:93 INFO Environment variable LMOD_EXTENDED_DEFAULT set to no (previous value: 'no')
== 2023-07-14 03:38:22,495 modules.py:299 INFO Full path for Lmod command is /usr/share/lmod/lmod/libexec/lmod, so using it
== 2023-07-14 03:38:22,495 modules.py:455 INFO Prepended list of module paths with path used by EasyBuild: /gpfs/easybuild/dev/modules/all
== 2023-07-14 03:38:22,495 easyconfig.py:473 INFO Obtained list of valid module classes: ['base', 'ai', 'astro', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'quantum', 'phys', 'system', 'toolchain', 'tools', 'vis']
== 2023-07-14 03:38:22,496 easyconfig.py:1896 INFO Derived full easyblock module path for PythonBundle: easybuild.easyblocks.generic.pythonbundle
== 2023-07-14 03:38:22,496 easyconfig.py:1943 INFO Successfully obtained class 'PythonBundle' for easyblock 'PythonBundle' (software name 'AlphaFold')
== 2023-07-14 03:38:22,496 easyconfig.py:705 INFO Parsing easyconfig file None with rawcontent: easyblock = 'PythonBundle'

name = 'AlphaFold'
version = '2.3.4'
_colab_suffix = '-ColabFold'
_cuda_suffix = '-CUDA-%(cudaver)s'
versionsuffix = _cuda_suffix + _colab_suffix
_commit = '41807ea2c75706cf03f790f06ca191dc04331e41'

homepage = 'https://github.com/sokrypton/alphafold'
description = """
AlphaFold can predict protein structures with atomic accuracy even where no
similar structure is known.
This package of AlphaFold contains patches for ColabFold."""

toolchain = {'name': 'foss', 'version': '2022a'}

builddependencies = [
    # required for installing dm-tree
    ('Bazel', '5.1.1'),
    ('CMake', '3.23.1'),
]

dependencies = [
    ('Python', '3.10.4'),
    ('CUDA', '11.7.0', '', SYSTEM),
    ('SciPy-bundle', '2022.05'),
    ('PyYAML', '6.0'),
    ('TensorFlow', '2.11.0', _cuda_suffix),
    ('Biopython', '1.79'),
    ('HH-suite', '3.3.0'),
    ('HMMER', '3.3.2'),
    ('Kalign', '3.3.5'),
    ('jax', '0.3.25', _cuda_suffix),  # also provides absl-py
    ('UCX-CUDA', '1.12.1', _cuda_suffix),
    ('cuDNN', '8.4.1.50', _cuda_suffix, SYSTEM),
    ('NCCL', '2.12.12', _cuda_suffix),
    ('OpenMM', '8.0.0', _cuda_suffix),
]

# commit to use for downloading stereo_chemical_props.txt and copy to alphafold/common,
# see docker/Dockerfile in AlphaFold repository
local_scp_commit = '7102c6'

components = [
    (name, version, {
        'easyblock': 'PythonPackage',
        'source_urls': [
            'https://github.com/sokrypton/alphafold/archive/',
            'https://git.scicore.unibas.ch/schwede/openstructure/-/raw/%s/modules/mol/alg/src/' % local_scp_commit,
        ],
        'sources': [
            {
                'download_filename': '%s.tar.gz' % _commit,
                'filename': '%s-%s.tar.gz' % (name.lower() + _colab_suffix.lower(), version)
            },
            {
                'download_filename': 'stereo_chemical_props.txt',
                'filename': 'stereo_chemical_props-%s.txt' % local_scp_commit,
                'extract_cmd': "cp %s .",
            },
        ],
        'patches': [
            'AlphaFold-ColabFold-2.3.4_data-dep-paths.patch',
            'AlphaFold-2.0.0_n-cpu.patch',
            'AlphaFold-ColabFold-2.3.4_fix-scp-path.patch',
            'AlphaFold-2.0.1_setup_rm_tfcpu.patch',
            'AlphaFold-2.3.1_use_openmm_7.7.0.patch',
        ],
        'checksums': [
            'be6778333fc110b8662b0e262798d6fc1663a14d9341469c6558b2d7771b8024',  # alphafold-colabfold-2.3.4.tar.gz
            '24510899eeb49167cffedec8fa45363a4d08279c0c637a403b452f7d0ac09451',  # stereo_chemical_props-7102c6.txt
            # AlphaFold-ColabFold-2.3.4_data-dep-paths.patch
            '3826e357c35a58b2c8c0fab41ac8ae1b4d4c135162fe47ded577a13dade0c6f3',
            # AlphaFold-2.0.0_n-cpu.patch
            'dfda4dd5f9aba19fe2b6eb9a0ec583d12dcefdfee8ab8803fc57ad48d582db04',
            # AlphaFold-ColabFold-2.3.4_fix-scp-path.patch
            '07bf81f987bc1ab67b7d71121396449289d3ffb499cddb62a135574f2ca7115a',
            # AlphaFold-2.0.1_setup_rm_tfcpu.patch
            '1a2e4e843bd9a4d15ee39e6c37cc63ba281311cc7a0a5610f0e43b52ef93faac',
            # AlphaFold-2.3.1_use_openmm_7.7.0.patch
            'd800bb085deac7edbe2d72916c1194043964aaf51b88a3b5a5016ab68a1090ec',
        ],
        'start_dir': 'alphafold-%s' % _commit,
        'use_pip': True,
    }),
]

use_pip = True

exts_list = [
    ('PDBFixer', '1.8.1', {
        'source_urls': ['https://github.com/openmm/pdbfixer/archive/refs/tags/'],
        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
        'checksums': ['d50551abfe9dbaefc066f4d9d400cdebe57f1fefd9de9d01e12beb87efd99595'],
    }),
    ('toolz', '0.12.0', {
        'checksums': ['88c570861c440ee3f2f6037c4654613228ff40c93a6c25e0eba70d17282c6194'],
    }),
    ('chex', '0.1.6', {
        'checksums': ['adb5d2352b5f0d248ccf594be1b1bf9ee7a2bee2a57f0eac78547538d479b0e7'],
    }),
    ('tabulate', '0.9.0', {
        'checksums': ['0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c'],
    }),
    ('jmp', '0.0.4', {
        'checksums': ['5dfeb0fd7c7a9f72a70fff0aab9d0cbfae32a809c02f4037ff3485ceb33e1730'],
    }),
    ('dm-haiku', '0.0.9', {
        'modulename': 'haiku',
        'source_urls': ['https://github.com/deepmind/dm-haiku/archive/refs/tags/'],
        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
        'checksums': ['d550f07f5891ede30ada5faafde98f549ed1b8ceadb7a601cca3d81db7d82414'],
    }),
    ('dm-tree', '0.1.8', {
        'modulename': 'tree',
        'checksums': ['0fcaabbb14e7980377439e7140bd05552739ca5e515ecb3119f234acee4b9430'],
    }),
    ('websocket-client', '1.5.1', {
        'modulename': 'websocket',
        'checksums': ['3f09e6d8230892547132177f575a4e3e73cfdf06526e20cc02aa1c3b47184d40'],
    }),
    ('docker', '6.0.1', {
        'checksums': ['896c4282e5c7af5c45e8b683b0b0c33932974fe6e50fc6906a0a83616ab3da97'],
    }),
    ('immutabledict', '2.2.3', {
        'checksums': ['0e1e8a3f2b3ff062daa19795f947e9ec7a58add269d44e34d3ab4319e1343853'],
    }),
    ('contextlib2', '21.6.0', {
        'checksums': ['ab1e2bfe1d01d968e1b7e8d9023bc51ef3509bba217bb730cee3827e1ee82869'],
    }),
    ('ml_collections', '0.1.1', {
        'preinstallopts': "touch requirements.txt && touch requirements-test.txt && ",
        'checksums': ['3fefcc72ec433aa1e5d32307a3e474bbb67f405be814ea52a2166bfc9dbe68cc'],
    }),
]

_alphafold_buildir = '%%(builddir)s/%%(namelower)s-%s' % _commit

postinstallcmds = [
    "mkdir -p %(installdir)s/bin",
    # run_alphafold.py script is missing a shebang...
    "echo '#!/usr/bin/env python' > %(installdir)s/bin/run_alphafold.py",
    "cat %s/run_alphafold.py >> %%(installdir)s/bin/run_alphafold.py" % _alphafold_buildir,
    "chmod a+x %(installdir)s/bin/run_alphafold*.py",
    "cd %(installdir)s/bin && ln -s run_alphafold.py alphafold",
    "cp -a %s/scripts %%(installdir)s/" % _alphafold_buildir,
    "cp %%(builddir)s/stereo_chemical_props-%s.txt %%(installdir)s/stereo_chemical_props.txt" % local_scp_commit,
    # run tests for run_alphafold.py script;
    # shouldn't do this in sanity check to avoid breaking use of --module-only
    "PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:$PYTHONPATH "
    "python %s/run_alphafold_test.py" % _alphafold_buildir,
]

sanity_check_paths = {
    'files': ['bin/alphafold', 'bin/pdbfixer', 'bin/run_alphafold.py', 'stereo_chemical_props.txt'],
    'dirs': ['lib/python%(pyshortver)s/site-packages', 'scripts'],
}

sanity_check_commands = [
    "pdbfixer --help",
    "python -m openmm.testInstallation",
    "python -c 'import alphafold'",
    "alphafold --help 2>&1 | grep 'Full AlphaFold protein structure prediction script'",
]

sanity_pip_check = True

# these allow to make predictions on proteins that would typically be too long to fit into GPU memory;
# see https://github.com/deepmind/alphafold/blob/main/docker/run_docker.py
modextravars = {
    'TF_FORCE_UNIFIED_MEMORY': '1',
    'XLA_PYTHON_CLIENT_MEM_FRACTION': '3',
    # 'ALPHAFOLD_DATA_DIR': '/path/to/AlphaFold_DBs',  # please adapt,
    'OPENMM_RELAX': 'CUDA'  # unset or set to 'CPU' in order not to run the energy minimization on GPU; PR#189
}

moduleclass = 'bio'

== 2023-07-14 03:38:22,497 parser.py:139 INFO Type checking of easyconfig parameter values passed!
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter builddependencies: value [('Bazel', '5.1.1'), ('CMake', '3.23.1')] (type: <class 'list'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter components: value [('AlphaFold', '2.3.4', {'easyblock': 'PythonPackage', 'source_urls': ['https://github.com/sokrypton/alphafold/archive/', 'https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c6/modules/mol/alg/src/'], 'sources': [{'download_filename': '41807ea2c75706cf03f790f06ca191dc04331e41.tar.gz', 'filename': 'alphafold-colabfold-2.3.4.tar.gz'}, {'download_filename': 'stereo_chemical_props.txt', 'filename': 'stereo_chemical_props-7102c6.txt', 'extract_cmd': 'cp %s .'}], 'patches': ['AlphaFold-ColabFold-2.3.4_data-dep-paths.patch', 'AlphaFold-2.0.0_n-cpu.patch', 'AlphaFold-ColabFold-2.3.4_fix-scp-path.patch', 'AlphaFold-2.0.1_setup_rm_tfcpu.patch', 'AlphaFold-2.3.1_use_openmm_7.7.0.patch'], 'checksums': ['be6778333fc110b8662b0e262798d6fc1663a14d9341469c6558b2d7771b8024', '24510899eeb49167cffedec8fa45363a4d08279c0c637a403b452f7d0ac09451', '3826e357c35a58b2c8c0fab41ac8ae1b4d4c135162fe47ded577a13dade0c6f3', 'dfda4dd5f9aba19fe2b6eb9a0ec583d12dcefdfee8ab8803fc57ad48d582db04', '07bf81f987bc1ab67b7d71121396449289d3ffb499cddb62a135574f2ca7115a', '1a2e4e843bd9a4d15ee39e6c37cc63ba281311cc7a0a5610f0e43b52ef93faac', 'd800bb085deac7edbe2d72916c1194043964aaf51b88a3b5a5016ab68a1090ec'], 'start_dir': 'alphafold-41807ea2c75706cf03f790f06ca191dc04331e41', 'use_pip': True})] (type: <class 'list'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter dependencies: value [('Python', '3.10.4'), ('CUDA', '11.7.0', '', {'name': 'system', 'version': 'system'}), ('SciPy-bundle', '2022.05'), ('PyYAML', '6.0'), ('TensorFlow', '2.11.0', '-CUDA-%(cudaver)s'), ('Biopython', '1.79'), ('HH-suite', '3.3.0'), ('HMMER', '3.3.2'), ('Kalign', '3.3.5'), ('jax', '0.3.25', '-CUDA-%(cudaver)s'), ('UCX-CUDA', '1.12.1', '-CUDA-%(cudaver)s'), ('cuDNN', '8.4.1.50', '-CUDA-%(cudaver)s', {'name': 'system', 'version': 'system'}), ('NCCL', '2.12.12', '-CUDA-%(cudaver)s'), ('OpenMM', '8.0.0', '-CUDA-%(cudaver)s')] (type: <class 'list'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter description: value 
AlphaFold can predict protein structures with atomic accuracy even where no
similar structure is known.
This package of AlphaFold contains patches for ColabFold. (type: <class 'str'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter easyblock: value PythonBundle (type: <class 'str'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter exts_list: value [('PDBFixer', '1.8.1', {'source_urls': ['https://github.com/openmm/pdbfixer/archive/refs/tags/'], 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['d50551abfe9dbaefc066f4d9d400cdebe57f1fefd9de9d01e12beb87efd99595']}), ('toolz', '0.12.0', {'checksums': ['88c570861c440ee3f2f6037c4654613228ff40c93a6c25e0eba70d17282c6194']}), ('chex', '0.1.6', {'checksums': ['adb5d2352b5f0d248ccf594be1b1bf9ee7a2bee2a57f0eac78547538d479b0e7']}), ('tabulate', '0.9.0', {'checksums': ['0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c']}), ('jmp', '0.0.4', {'checksums': ['5dfeb0fd7c7a9f72a70fff0aab9d0cbfae32a809c02f4037ff3485ceb33e1730']}), ('dm-haiku', '0.0.9', {'modulename': 'haiku', 'source_urls': ['https://github.com/deepmind/dm-haiku/archive/refs/tags/'], 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], 'checksums': ['d550f07f5891ede30ada5faafde98f549ed1b8ceadb7a601cca3d81db7d82414']}), ('dm-tree', '0.1.8', {'modulename': 'tree', 'checksums': ['0fcaabbb14e7980377439e7140bd05552739ca5e515ecb3119f234acee4b9430']}), ('websocket-client', '1.5.1', {'modulename': 'websocket', 'checksums': ['3f09e6d8230892547132177f575a4e3e73cfdf06526e20cc02aa1c3b47184d40']}), ('docker', '6.0.1', {'checksums': ['896c4282e5c7af5c45e8b683b0b0c33932974fe6e50fc6906a0a83616ab3da97']}), ('immutabledict', '2.2.3', {'checksums': ['0e1e8a3f2b3ff062daa19795f947e9ec7a58add269d44e34d3ab4319e1343853']}), ('contextlib2', '21.6.0', {'checksums': ['ab1e2bfe1d01d968e1b7e8d9023bc51ef3509bba217bb730cee3827e1ee82869']}), ('ml_collections', '0.1.1', {'preinstallopts': 'touch requirements.txt && touch requirements-test.txt && ', 'checksums': ['3fefcc72ec433aa1e5d32307a3e474bbb67f405be814ea52a2166bfc9dbe68cc']})] (type: <class 'list'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter homepage: value https://github.com/sokrypton/alphafold (type: <class 'str'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter modextravars: value {'TF_FORCE_UNIFIED_MEMORY': '1', 'XLA_PYTHON_CLIENT_MEM_FRACTION': '3', 'OPENMM_RELAX': 'CUDA'} (type: <class 'dict'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter moduleclass: value bio (type: <class 'str'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter name: value AlphaFold (type: <class 'str'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter postinstallcmds: value ['mkdir -p %(installdir)s/bin', "echo '#!/usr/bin/env python' > %(installdir)s/bin/run_alphafold.py", 'cat %(builddir)s/%(namelower)s-41807ea2c75706cf03f790f06ca191dc04331e41/run_alphafold.py >> %(installdir)s/bin/run_alphafold.py', 'chmod a+x %(installdir)s/bin/run_alphafold*.py', 'cd %(installdir)s/bin && ln -s run_alphafold.py alphafold', 'cp -a %(builddir)s/%(namelower)s-41807ea2c75706cf03f790f06ca191dc04331e41/scripts %(installdir)s/', 'cp %(builddir)s/stereo_chemical_props-7102c6.txt %(installdir)s/stereo_chemical_props.txt', 'PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH python %(builddir)s/%(namelower)s-41807ea2c75706cf03f790f06ca191dc04331e41/run_alphafold_test.py'] (type: <class 'list'>)
== 2023-07-14 03:38:22,498 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_commands: value ['pdbfixer --help', 'python -m openmm.testInstallation', "python -c 'import alphafold'", "alphafold --help 2>&1 | grep 'Full AlphaFold protein structure prediction script'"] (type: <class 'list'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter sanity_check_paths: value {'files': ['bin/alphafold', 'bin/pdbfixer', 'bin/run_alphafold.py', 'stereo_chemical_props.txt'], 'dirs': ['lib/python%(pyshortver)s/site-packages', 'scripts']} (type: <class 'dict'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter sanity_pip_check: value True (type: <class 'bool'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter toolchain: value {'name': 'foss', 'version': '2022a'} (type: <class 'dict'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter use_pip: value True (type: <class 'bool'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter version: value 2.3.4 (type: <class 'str'>)
== 2023-07-14 03:38:22,499 easyconfig.py:686 INFO setting easyconfig parameter versionsuffix: value -CUDA-%(cudaver)s-ColabFold (type: <class 'str'>)
== 2023-07-14 03:38:22,499 easyconfig.py:747 INFO Parsing dependency specifications...
== 2023-07-14 03:38:22,499 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:22,501 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:22,501 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:22,501 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:22,767 modules.py:626 INFO Checking whether Bazel/5.1.1-foss-2022a exists...
== 2023-07-14 03:38:22,768 modules.py:647 INFO Module Bazel/5.1.1-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,768 modules.py:654 INFO Result for existence check of Bazel/5.1.1-foss-2022a module: False
== 2023-07-14 03:38:22,769 modules.py:626 INFO Checking whether Bazel/5.1.1-gompi-2022a exists...
== 2023-07-14 03:38:22,769 modules.py:647 INFO Module Bazel/5.1.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,769 modules.py:654 INFO Result for existence check of Bazel/5.1.1-gompi-2022a module: False
== 2023-07-14 03:38:22,770 modules.py:626 INFO Checking whether Bazel/5.1.1-gfbf-2022a exists...
== 2023-07-14 03:38:22,770 modules.py:647 INFO Module Bazel/5.1.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,770 modules.py:654 INFO Result for existence check of Bazel/5.1.1-gfbf-2022a module: False
== 2023-07-14 03:38:22,770 modules.py:626 INFO Checking whether Bazel/5.1.1-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,770 modules.py:647 INFO Module Bazel/5.1.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,771 modules.py:654 INFO Result for existence check of Bazel/5.1.1-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,771 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,771 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,772 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,772 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,772 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Bazel', 'version': '5.1.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,773 modules.py:626 INFO Checking whether CMake/3.23.1-foss-2022a exists...
== 2023-07-14 03:38:22,773 modules.py:647 INFO Module CMake/3.23.1-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,775 modules.py:654 INFO Result for existence check of CMake/3.23.1-foss-2022a module: False
== 2023-07-14 03:38:22,781 modules.py:626 INFO Checking whether CMake/3.23.1-gompi-2022a exists...
== 2023-07-14 03:38:22,781 modules.py:647 INFO Module CMake/3.23.1-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,783 modules.py:654 INFO Result for existence check of CMake/3.23.1-gompi-2022a module: False
== 2023-07-14 03:38:22,783 modules.py:626 INFO Checking whether CMake/3.23.1-gfbf-2022a exists...
== 2023-07-14 03:38:22,784 modules.py:647 INFO Module CMake/3.23.1-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,785 modules.py:654 INFO Result for existence check of CMake/3.23.1-gfbf-2022a module: False
== 2023-07-14 03:38:22,792 modules.py:626 INFO Checking whether CMake/3.23.1-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,792 modules.py:647 INFO Module CMake/3.23.1-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,794 modules.py:654 INFO Result for existence check of CMake/3.23.1-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,795 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,795 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,796 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,796 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,796 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'CMake', 'version': '3.23.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,798 modules.py:626 INFO Checking whether Python/3.10.4-foss-2022a exists...
== 2023-07-14 03:38:22,799 modules.py:647 INFO Module Python/3.10.4-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,799 modules.py:654 INFO Result for existence check of Python/3.10.4-foss-2022a module: False
== 2023-07-14 03:38:22,799 modules.py:626 INFO Checking whether Python/3.10.4-gompi-2022a exists...
== 2023-07-14 03:38:22,800 modules.py:647 INFO Module Python/3.10.4-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,800 modules.py:654 INFO Result for existence check of Python/3.10.4-gompi-2022a module: False
== 2023-07-14 03:38:22,800 modules.py:626 INFO Checking whether Python/3.10.4-gfbf-2022a exists...
== 2023-07-14 03:38:22,800 modules.py:647 INFO Module Python/3.10.4-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,801 modules.py:654 INFO Result for existence check of Python/3.10.4-gfbf-2022a module: False
== 2023-07-14 03:38:22,801 modules.py:626 INFO Checking whether Python/3.10.4-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,801 modules.py:647 INFO Module Python/3.10.4-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,801 modules.py:654 INFO Result for existence check of Python/3.10.4-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,802 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,802 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,802 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,803 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,803 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Python', 'version': '3.10.4', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,804 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-gompi-2022a exists...
== 2023-07-14 03:38:22,804 modules.py:647 INFO Module SciPy-bundle/2022.05-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,804 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-gompi-2022a module: False
== 2023-07-14 03:38:22,805 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-gfbf-2022a exists...
== 2023-07-14 03:38:22,805 modules.py:647 INFO Module SciPy-bundle/2022.05-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,805 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-gfbf-2022a module: False
== 2023-07-14 03:38:22,805 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,806 modules.py:647 INFO Module SciPy-bundle/2022.05-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,806 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,806 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:22,806 modules.py:647 INFO Module SciPy-bundle/2022.05-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,807 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-GCCcore-11.3.0 module: False
== 2023-07-14 03:38:22,807 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'SciPy-bundle', 'version': '2022.05', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'}
== 2023-07-14 03:38:22,807 modules.py:626 INFO Checking whether PyYAML/6.0-foss-2022a exists...
== 2023-07-14 03:38:22,808 modules.py:647 INFO Module PyYAML/6.0-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,809 modules.py:654 INFO Result for existence check of PyYAML/6.0-foss-2022a module: False
== 2023-07-14 03:38:22,810 modules.py:626 INFO Checking whether PyYAML/6.0-gompi-2022a exists...
== 2023-07-14 03:38:22,810 modules.py:647 INFO Module PyYAML/6.0-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,811 modules.py:654 INFO Result for existence check of PyYAML/6.0-gompi-2022a module: False
== 2023-07-14 03:38:22,812 modules.py:626 INFO Checking whether PyYAML/6.0-gfbf-2022a exists...
== 2023-07-14 03:38:22,812 modules.py:647 INFO Module PyYAML/6.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,813 modules.py:654 INFO Result for existence check of PyYAML/6.0-gfbf-2022a module: False
== 2023-07-14 03:38:22,813 modules.py:626 INFO Checking whether PyYAML/6.0-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,813 modules.py:647 INFO Module PyYAML/6.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,814 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,815 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,815 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,815 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,815 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,815 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'PyYAML', 'version': '6.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,816 modules.py:626 INFO Checking whether TensorFlow/2.11.0-gompi-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,816 modules.py:647 INFO Module TensorFlow/2.11.0-gompi-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,817 modules.py:654 INFO Result for existence check of TensorFlow/2.11.0-gompi-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,818 modules.py:626 INFO Checking whether TensorFlow/2.11.0-gfbf-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,818 modules.py:647 INFO Module TensorFlow/2.11.0-gfbf-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,819 modules.py:654 INFO Result for existence check of TensorFlow/2.11.0-gfbf-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,819 modules.py:626 INFO Checking whether TensorFlow/2.11.0-GCC-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,819 modules.py:647 INFO Module TensorFlow/2.11.0-GCC-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,821 modules.py:654 INFO Result for existence check of TensorFlow/2.11.0-GCC-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,821 modules.py:626 INFO Checking whether TensorFlow/2.11.0-GCCcore-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,821 modules.py:647 INFO Module TensorFlow/2.11.0-GCCcore-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,822 modules.py:654 INFO Result for existence check of TensorFlow/2.11.0-GCCcore-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,822 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'TensorFlow', 'version': '2.11.0', 'versionsuffix': '-CUDA-11.7.0', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'}
== 2023-07-14 03:38:22,822 modules.py:626 INFO Checking whether Biopython/1.79-gompi-2022a exists...
== 2023-07-14 03:38:22,822 modules.py:647 INFO Module Biopython/1.79-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,823 modules.py:654 INFO Result for existence check of Biopython/1.79-gompi-2022a module: False
== 2023-07-14 03:38:22,823 modules.py:626 INFO Checking whether Biopython/1.79-gfbf-2022a exists...
== 2023-07-14 03:38:22,823 modules.py:647 INFO Module Biopython/1.79-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,824 modules.py:654 INFO Result for existence check of Biopython/1.79-gfbf-2022a module: False
== 2023-07-14 03:38:22,824 modules.py:626 INFO Checking whether Biopython/1.79-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,824 modules.py:647 INFO Module Biopython/1.79-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,825 modules.py:654 INFO Result for existence check of Biopython/1.79-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,825 modules.py:626 INFO Checking whether Biopython/1.79-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:22,825 modules.py:647 INFO Module Biopython/1.79-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,826 modules.py:654 INFO Result for existence check of Biopython/1.79-GCCcore-11.3.0 module: False
== 2023-07-14 03:38:22,826 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Biopython', 'version': '1.79', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'}
== 2023-07-14 03:38:22,826 modules.py:626 INFO Checking whether HH-suite/3.3.0-foss-2022a exists...
== 2023-07-14 03:38:22,826 modules.py:647 INFO Module HH-suite/3.3.0-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,827 modules.py:654 INFO Result for existence check of HH-suite/3.3.0-foss-2022a module: False
== 2023-07-14 03:38:22,827 modules.py:626 INFO Checking whether HH-suite/3.3.0-gfbf-2022a exists...
== 2023-07-14 03:38:22,828 modules.py:647 INFO Module HH-suite/3.3.0-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,828 modules.py:654 INFO Result for existence check of HH-suite/3.3.0-gfbf-2022a module: False
== 2023-07-14 03:38:22,829 modules.py:626 INFO Checking whether HH-suite/3.3.0-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,829 modules.py:647 INFO Module HH-suite/3.3.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,829 modules.py:654 INFO Result for existence check of HH-suite/3.3.0-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,830 modules.py:626 INFO Checking whether HH-suite/3.3.0-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:22,830 modules.py:647 INFO Module HH-suite/3.3.0-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,830 modules.py:654 INFO Result for existence check of HH-suite/3.3.0-GCCcore-11.3.0 module: False
== 2023-07-14 03:38:22,830 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,831 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'HH-suite', 'version': '3.3.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gompi', 'version': '2022a'}
== 2023-07-14 03:38:22,831 modules.py:626 INFO Checking whether HMMER/3.3.2-foss-2022a exists...
== 2023-07-14 03:38:22,831 modules.py:647 INFO Module HMMER/3.3.2-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,832 modules.py:654 INFO Result for existence check of HMMER/3.3.2-foss-2022a module: False
== 2023-07-14 03:38:22,832 modules.py:626 INFO Checking whether HMMER/3.3.2-gfbf-2022a exists...
== 2023-07-14 03:38:22,832 modules.py:647 INFO Module HMMER/3.3.2-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,833 modules.py:654 INFO Result for existence check of HMMER/3.3.2-gfbf-2022a module: False
== 2023-07-14 03:38:22,833 modules.py:626 INFO Checking whether HMMER/3.3.2-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,833 modules.py:647 INFO Module HMMER/3.3.2-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,833 modules.py:654 INFO Result for existence check of HMMER/3.3.2-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,834 modules.py:626 INFO Checking whether HMMER/3.3.2-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:22,834 modules.py:647 INFO Module HMMER/3.3.2-GCCcore-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,834 modules.py:654 INFO Result for existence check of HMMER/3.3.2-GCCcore-11.3.0 module: False
== 2023-07-14 03:38:22,834 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,835 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'HMMER', 'version': '3.3.2', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'gompi', 'version': '2022a'}
== 2023-07-14 03:38:22,835 modules.py:626 INFO Checking whether Kalign/3.3.5-foss-2022a exists...
== 2023-07-14 03:38:22,835 modules.py:647 INFO Module Kalign/3.3.5-foss-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,836 modules.py:654 INFO Result for existence check of Kalign/3.3.5-foss-2022a module: False
== 2023-07-14 03:38:22,836 modules.py:626 INFO Checking whether Kalign/3.3.5-gompi-2022a exists...
== 2023-07-14 03:38:22,836 modules.py:647 INFO Module Kalign/3.3.5-gompi-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,837 modules.py:654 INFO Result for existence check of Kalign/3.3.5-gompi-2022a module: False
== 2023-07-14 03:38:22,837 modules.py:626 INFO Checking whether Kalign/3.3.5-gfbf-2022a exists...
== 2023-07-14 03:38:22,837 modules.py:647 INFO Module Kalign/3.3.5-gfbf-2022a not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,837 modules.py:654 INFO Result for existence check of Kalign/3.3.5-gfbf-2022a module: False
== 2023-07-14 03:38:22,837 modules.py:626 INFO Checking whether Kalign/3.3.5-GCC-11.3.0 exists...
== 2023-07-14 03:38:22,838 modules.py:647 INFO Module Kalign/3.3.5-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,838 modules.py:654 INFO Result for existence check of Kalign/3.3.5-GCC-11.3.0 module: False
== 2023-07-14 03:38:22,838 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,838 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,839 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,839 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,839 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'Kalign', 'version': '3.3.5', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,839 modules.py:626 INFO Checking whether jax/0.3.25-gompi-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,839 modules.py:647 INFO Module jax/0.3.25-gompi-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,840 modules.py:654 INFO Result for existence check of jax/0.3.25-gompi-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,840 modules.py:626 INFO Checking whether jax/0.3.25-gfbf-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,840 modules.py:647 INFO Module jax/0.3.25-gfbf-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,841 modules.py:654 INFO Result for existence check of jax/0.3.25-gfbf-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,841 modules.py:626 INFO Checking whether jax/0.3.25-GCC-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,841 modules.py:647 INFO Module jax/0.3.25-GCC-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,842 modules.py:654 INFO Result for existence check of jax/0.3.25-GCC-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,842 modules.py:626 INFO Checking whether jax/0.3.25-GCCcore-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,842 modules.py:647 INFO Module jax/0.3.25-GCCcore-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,843 modules.py:654 INFO Result for existence check of jax/0.3.25-GCCcore-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,843 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'jax', 'version': '0.3.25', 'versionsuffix': '-CUDA-11.7.0', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'}
== 2023-07-14 03:38:22,843 modules.py:626 INFO Checking whether UCX-CUDA/1.12.1-foss-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,844 modules.py:647 INFO Module UCX-CUDA/1.12.1-foss-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,844 modules.py:654 INFO Result for existence check of UCX-CUDA/1.12.1-foss-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,844 modules.py:626 INFO Checking whether UCX-CUDA/1.12.1-gompi-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,844 modules.py:647 INFO Module UCX-CUDA/1.12.1-gompi-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,845 modules.py:654 INFO Result for existence check of UCX-CUDA/1.12.1-gompi-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,845 modules.py:626 INFO Checking whether UCX-CUDA/1.12.1-gfbf-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,845 modules.py:647 INFO Module UCX-CUDA/1.12.1-gfbf-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,846 modules.py:654 INFO Result for existence check of UCX-CUDA/1.12.1-gfbf-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,846 modules.py:626 INFO Checking whether UCX-CUDA/1.12.1-GCC-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,846 modules.py:647 INFO Module UCX-CUDA/1.12.1-GCC-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,847 modules.py:654 INFO Result for existence check of UCX-CUDA/1.12.1-GCC-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,847 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,847 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,848 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,848 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,848 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'UCX-CUDA', 'version': '1.12.1', 'versionsuffix': '-CUDA-11.7.0', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,848 modules.py:626 INFO Checking whether NCCL/2.12.12-foss-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,848 modules.py:647 INFO Module NCCL/2.12.12-foss-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,848 modules.py:654 INFO Result for existence check of NCCL/2.12.12-foss-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,848 modules.py:626 INFO Checking whether NCCL/2.12.12-gompi-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,849 modules.py:647 INFO Module NCCL/2.12.12-gompi-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,849 modules.py:654 INFO Result for existence check of NCCL/2.12.12-gompi-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,849 modules.py:626 INFO Checking whether NCCL/2.12.12-gfbf-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,849 modules.py:647 INFO Module NCCL/2.12.12-gfbf-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,849 modules.py:654 INFO Result for existence check of NCCL/2.12.12-gfbf-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,849 modules.py:626 INFO Checking whether NCCL/2.12.12-GCC-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,849 modules.py:647 INFO Module NCCL/2.12.12-GCC-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,849 modules.py:654 INFO Result for existence check of NCCL/2.12.12-GCC-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,849 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,850 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,850 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,850 easyconfig.py:2181 INFO Found loaded index for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs
== 2023-07-14 03:38:22,850 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'NCCL', 'version': '2.12.12', 'versionsuffix': '-CUDA-11.7.0', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'GCCcore', 'version': '11.3.0'}
== 2023-07-14 03:38:22,850 modules.py:626 INFO Checking whether OpenMM/8.0.0-gompi-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,850 modules.py:647 INFO Module OpenMM/8.0.0-gompi-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,851 modules.py:654 INFO Result for existence check of OpenMM/8.0.0-gompi-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,851 modules.py:626 INFO Checking whether OpenMM/8.0.0-gfbf-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,851 modules.py:647 INFO Module OpenMM/8.0.0-gfbf-2022a-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,852 modules.py:654 INFO Result for existence check of OpenMM/8.0.0-gfbf-2022a-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,852 modules.py:626 INFO Checking whether OpenMM/8.0.0-GCC-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,852 modules.py:647 INFO Module OpenMM/8.0.0-GCC-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,853 modules.py:654 INFO Result for existence check of OpenMM/8.0.0-GCC-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,853 modules.py:626 INFO Checking whether OpenMM/8.0.0-GCCcore-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:22,853 modules.py:647 INFO Module OpenMM/8.0.0-GCCcore-11.3.0-CUDA-11.7.0 not found via module avail/show, checking whether it is a wrapper
== 2023-07-14 03:38:22,854 modules.py:654 INFO Result for existence check of OpenMM/8.0.0-GCCcore-11.3.0-CUDA-11.7.0 module: False
== 2023-07-14 03:38:22,854 easyconfig.py:2357 INFO Minimally resolving dependency {'full_mod_name': None, 'short_mod_name': None, 'name': 'OpenMM', 'version': '8.0.0', 'versionsuffix': '-CUDA-11.7.0', 'toolchain': {'name': 'foss', 'version': '2022a'}, 'toolchain_inherited': True, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}} using toolchain {'name': 'foss', 'version': '2022a'}
== 2023-07-14 03:38:22,854 easyconfig.py:866 INFO Validating easyconfig
== 2023-07-14 03:38:22,854 easyconfig.py:871 INFO Checking OS dependencies
== 2023-07-14 03:38:22,854 easyconfig.py:926 INFO OS dependencies ok: []
== 2023-07-14 03:38:22,855 easyconfig.py:876 INFO Checking skipsteps
== 2023-07-14 03:38:22,855 easyconfig.py:881 INFO Checking build option lists
== 2023-07-14 03:38:22,855 easyconfig.py:884 INFO Checking licenses
== 2023-07-14 03:38:22,857 easyconfig.py:1896 INFO Derived full easyblock module path for PythonPackage: easybuild.easyblocks.generic.pythonpackage
== 2023-07-14 03:38:22,857 easyconfig.py:1943 INFO Successfully obtained class 'PythonPackage' for easyblock 'PythonPackage' (software name 'AlphaFold')
== 2023-07-14 03:38:22,857 bundle.py:133 INFO Using easyblock PythonPackage for component AlphaFold
== 2023-07-14 03:38:22,857 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:22,858 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:22,858 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:22,858 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:22,858 pythonbundle.py:73 INFO Detection of downloaded extension dependencies is enabled
== 2023-07-14 03:38:22,858 pythonbundle.py:75 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}}
== 2023-07-14 03:38:22,858 easyblock.py:4200 INFO Obtained application instance of for AlphaFold (easyblock: PythonBundle)
== 2023-07-14 03:38:22,859 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:22,859 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:22,859 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:22,859 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:22,863 one.py:180 INFO Skipping reformatting value for parameter 'toolchain'
== 2023-07-14 03:38:22,866 filetools.py:1913 INFO Creating directory /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519 (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:22,866 easyblock.py:4454 INFO Dumped easyconfig instance to /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/AlphaFold-2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.eb
== 2023-07-14 03:38:22,866 filetools.py:1913 INFO Creating directory /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/easyblocks (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:22,867 filetools.py:2426 INFO /gpfs/easybuild/dev/software/EasyBuild/4.8.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/bundle.py copied to /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/easyblocks/bundle.py
== 2023-07-14 03:38:22,867 easyblock.py:4434 INFO Dumped easyblock bundle.py required for reproduction to /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/easyblocks
== 2023-07-14 03:38:22,867 filetools.py:2426 INFO /gpfs/easybuild/dev/software/EasyBuild/4.8.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/pythonbundle.py copied to /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/easyblocks/pythonbundle.py
== 2023-07-14 03:38:22,867 easyblock.py:4434 INFO Dumped easyblock pythonbundle.py required for reproduction to /dev/shm/hpcsw/eb-69ibteyz/reprod_20230714033822_3931519/easyblocks
== 2023-07-14 03:38:22,867 easyblock.py:2209 INFO Number of iterations to perform for central part of installation procedure: 1
== 2023-07-14 03:38:22,867 build_log.py:267 INFO building and installing AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold...
== 2023-07-14 03:38:22,873 filetools.py:2006 INFO Lock /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock does not exist
== 2023-07-14 03:38:22,873 filetools.py:1947 INFO Creating lock at /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock...
== 2023-07-14 03:38:22,873 filetools.py:1913 INFO Creating directory /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:22,873 filetools.py:1956 INFO Lock created: /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock
== 2023-07-14 03:38:22,874 build_log.py:267 INFO fetching files...
== 2023-07-14 03:38:22,878 easyblock.py:3926 INFO Starting fetch step
== 2023-07-14 03:38:22,878 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:22,879 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:22,879 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:22,879 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:22,879 easyblock.py:3934 INFO Running method fetch_step part of step fetch
== 2023-07-14 03:38:22,879 easyblock.py:2331 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2023-07-14 03:38:22,879 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for alphafold-colabfold-2.3.4.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:22,880 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:22,880 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:22,882 filetools.py:1913 INFO Creating directory /software/sources/a/AlphaFold (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:23,370 filetools.py:816 INFO File size for https://github.com/sokrypton/alphafold/archive/41807ea2c75706cf03f790f06ca191dc04331e41.tar.gz: None
== 2023-07-14 03:38:24,236 filetools.py:823 INFO Downloaded file alphafold-colabfold-2.3.4.tar.gz from url https://github.com/sokrypton/alphafold/archive/41807ea2c75706cf03f790f06ca191dc04331e41.tar.gz to /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz
== 2023-07-14 03:38:24,237 filetools.py:855 INFO Successful download of file alphafold-colabfold-2.3.4.tar.gz from url https://github.com/sokrypton/alphafold/archive/41807ea2c75706cf03f790f06ca191dc04331e41.tar.gz to path /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz
== 2023-07-14 03:38:24,237 easyblock.py:939 INFO Successfully downloaded source file alphafold-colabfold-2.3.4.tar.gz from https://github.com/sokrypton/alphafold/archive/41807ea2c75706cf03f790f06ca191dc04331e41.tar.gz
== 2023-07-14 03:38:24,237 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for stereo_chemical_props-7102c6.txt: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,237 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,237 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,430 filetools.py:832 WARNING URL https://github.com/sokrypton/alphafold/archive/stereo_chemical_props.txt was not found (HTTP response code 404), not trying again
== 2023-07-14 03:38:24,432 filetools.py:859 WARNING Download of https://github.com/sokrypton/alphafold/archive/stereo_chemical_props.txt to /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt failed, done trying
== 2023-07-14 03:38:24,653 filetools.py:816 INFO File size for https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c6/modules/mol/alg/src/stereo_chemical_props.txt: 9119
== 2023-07-14 03:38:24,653 filetools.py:270 INFO Not showing progress bar for downloading small file (size 9119)
== 2023-07-14 03:38:24,657 filetools.py:823 INFO Downloaded file stereo_chemical_props-7102c6.txt from url https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c6/modules/mol/alg/src/stereo_chemical_props.txt to /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt
== 2023-07-14 03:38:24,658 filetools.py:855 INFO Successful download of file stereo_chemical_props-7102c6.txt from url https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c6/modules/mol/alg/src/stereo_chemical_props.txt to path /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt
== 2023-07-14 03:38:24,658 easyblock.py:939 INFO Successfully downloaded source file stereo_chemical_props-7102c6.txt from https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c6/modules/mol/alg/src/stereo_chemical_props.txt
== 2023-07-14 03:38:24,658 easyblock.py:496 INFO Added sources: [{'name': 'alphafold-colabfold-2.3.4.tar.gz', 'path': '/software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz', 'cmd': None, 'checksum': 'be6778333fc110b8662b0e262798d6fc1663a14d9341469c6558b2d7771b8024', 'finalpath': '/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold'}, {'name': 'stereo_chemical_props-7102c6.txt', 'path': '/software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt', 'cmd': 'cp %s .', 'checksum': '24510899eeb49167cffedec8fa45363a4d08279c0c637a403b452f7d0ac09451', 'finalpath': '/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold'}]
== 2023-07-14 03:38:24,659 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for AlphaFold-ColabFold-2.3.4_data-dep-paths.patch: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,659 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,659 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,661 easyblock.py:844 INFO Found file AlphaFold-ColabFold-2.3.4_data-dep-paths.patch at /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_data-dep-paths.patch
== 2023-07-14 03:38:24,662 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for AlphaFold-2.0.0_n-cpu.patch: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,662 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,662 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,665 easyblock.py:844 INFO Found file AlphaFold-2.0.0_n-cpu.patch at /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.0_n-cpu.patch
== 2023-07-14 03:38:24,665 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for AlphaFold-ColabFold-2.3.4_fix-scp-path.patch: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,666 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,666 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,668 easyblock.py:844 INFO Found file AlphaFold-ColabFold-2.3.4_fix-scp-path.patch at /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_fix-scp-path.patch
== 2023-07-14 03:38:24,669 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for AlphaFold-2.0.1_setup_rm_tfcpu.patch: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,669 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,669 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,671 easyblock.py:844 INFO Found file AlphaFold-2.0.1_setup_rm_tfcpu.patch at /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.1_setup_rm_tfcpu.patch
== 2023-07-14 03:38:24,672 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for AlphaFold-2.3.1_use_openmm_7.7.0.patch: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,672 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,672 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,675 easyblock.py:844 INFO Found file AlphaFold-2.3.1_use_openmm_7.7.0.patch at /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.3.1_use_openmm_7.7.0.patch
== 2023-07-14 03:38:24,675 easyblock.py:535 INFO Added patches: [{'name': 'AlphaFold-ColabFold-2.3.4_data-dep-paths.patch', 'postinstall': False, 'path': '/gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_data-dep-paths.patch', 'checksum': '3826e357c35a58b2c8c0fab41ac8ae1b4d4c135162fe47ded577a13dade0c6f3'}, {'name': 'AlphaFold-2.0.0_n-cpu.patch', 'postinstall': False, 'path': '/gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.0_n-cpu.patch', 'checksum': 'dfda4dd5f9aba19fe2b6eb9a0ec583d12dcefdfee8ab8803fc57ad48d582db04'}, {'name': 'AlphaFold-ColabFold-2.3.4_fix-scp-path.patch', 'postinstall': False, 'path': '/gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_fix-scp-path.patch', 'checksum': '07bf81f987bc1ab67b7d71121396449289d3ffb499cddb62a135574f2ca7115a'}, {'name': 'AlphaFold-2.0.1_setup_rm_tfcpu.patch', 'postinstall': False, 'path': '/gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.1_setup_rm_tfcpu.patch', 'checksum': '1a2e4e843bd9a4d15ee39e6c37cc63ba281311cc7a0a5610f0e43b52ef93faac'}, {'name': 'AlphaFold-2.3.1_use_openmm_7.7.0.patch', 'postinstall': False, 'path': '/gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.3.1_use_openmm_7.7.0.patch', 'checksum': 'd800bb085deac7edbe2d72916c1194043964aaf51b88a3b5a5016ab68a1090ec'}]
== 2023-07-14 03:38:24,733 easyblock.py:2384 INFO md5 checksum for /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz: 4837791d7dc07aaf13e7a4c80563400a
== 2023-07-14 03:38:24,764 easyblock.py:2384 INFO sha256 checksum for /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz: be6778333fc110b8662b0e262798d6fc1663a14d9341469c6558b2d7771b8024
== 2023-07-14 03:38:24,764 easyblock.py:2384 INFO md5 checksum for /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt: 587cde8f1a4787c02fb08f28677470f1
== 2023-07-14 03:38:24,765 easyblock.py:2384 INFO sha256 checksum for /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt: 24510899eeb49167cffedec8fa45363a4d08279c0c637a403b452f7d0ac09451
== 2023-07-14 03:38:24,767 easyblock.py:2384 INFO md5 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_data-dep-paths.patch: 4f7a9f7859303b173d5d42125ef9c49b
== 2023-07-14 03:38:24,767 easyblock.py:2384 INFO sha256 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_data-dep-paths.patch: 3826e357c35a58b2c8c0fab41ac8ae1b4d4c135162fe47ded577a13dade0c6f3
== 2023-07-14 03:38:24,768 easyblock.py:2384 INFO md5 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.0_n-cpu.patch: 769dfb00b58323cfabfb34c0ce4ad232
== 2023-07-14 03:38:24,768 easyblock.py:2384 INFO sha256 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.0_n-cpu.patch: dfda4dd5f9aba19fe2b6eb9a0ec583d12dcefdfee8ab8803fc57ad48d582db04
== 2023-07-14 03:38:24,769 easyblock.py:2384 INFO md5 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_fix-scp-path.patch: 7853ab0df71a7f2359c0483b2e1b82d1
== 2023-07-14 03:38:24,769 easyblock.py:2384 INFO sha256 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_fix-scp-path.patch: 07bf81f987bc1ab67b7d71121396449289d3ffb499cddb62a135574f2ca7115a
== 2023-07-14 03:38:24,770 easyblock.py:2384 INFO md5 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.1_setup_rm_tfcpu.patch: 8a7ae1ced5843ae3efcd49ba0b97d7b1
== 2023-07-14 03:38:24,770 easyblock.py:2384 INFO sha256 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.1_setup_rm_tfcpu.patch: 1a2e4e843bd9a4d15ee39e6c37cc63ba281311cc7a0a5610f0e43b52ef93faac
== 2023-07-14 03:38:24,773 easyblock.py:2384 INFO md5 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.3.1_use_openmm_7.7.0.patch: 81e765eb7f0ec62984b4c633c109f591
== 2023-07-14 03:38:24,773 easyblock.py:2384 INFO sha256 checksum for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.3.1_use_openmm_7.7.0.patch: d800bb085deac7edbe2d72916c1194043964aaf51b88a3b5a5016ab68a1090ec
== 2023-07-14 03:38:24,774 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for PDBFixer-1.8.1.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:24,774 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:24,774 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:24,774 filetools.py:1913 INFO Creating directory /software/sources/a/AlphaFold/extensions (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:25,234 filetools.py:816 INFO File size for https://github.com/openmm/pdbfixer/archive/refs/tags/v1.8.1.tar.gz: None
== 2023-07-14 03:38:25,373 filetools.py:823 INFO Downloaded file PDBFixer-1.8.1.tar.gz from url https://github.com/openmm/pdbfixer/archive/refs/tags/v1.8.1.tar.gz to /software/sources/a/AlphaFold/extensions/PDBFixer-1.8.1.tar.gz
== 2023-07-14 03:38:25,373 filetools.py:855 INFO Successful download of file PDBFixer-1.8.1.tar.gz from url https://github.com/openmm/pdbfixer/archive/refs/tags/v1.8.1.tar.gz to path /software/sources/a/AlphaFold/extensions/PDBFixer-1.8.1.tar.gz
== 2023-07-14 03:38:25,374 easyblock.py:939 INFO Successfully downloaded source file PDBFixer-1.8.1.tar.gz from https://github.com/openmm/pdbfixer/archive/refs/tags/v1.8.1.tar.gz
== 2023-07-14 03:38:25,378 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/PDBFixer-1.8.1.tar.gz: 9186c650d15bd3f0477ff7eadab24900
== 2023-07-14 03:38:25,381 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/PDBFixer-1.8.1.tar.gz: d50551abfe9dbaefc066f4d9d400cdebe57f1fefd9de9d01e12beb87efd99595
== 2023-07-14 03:38:25,384 easyblock.py:685 INFO Checksum for extension source PDBFixer-1.8.1.tar.gz verified
== 2023-07-14 03:38:25,384 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:25,385 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for toolz-0.12.0.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:25,386 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:25,386 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:25,595 filetools.py:816 INFO File size for https://pypi.python.org/simple/toolz: 7887
== 2023-07-14 03:38:25,596 filetools.py:270 INFO Not showing progress bar for downloading small file (size 7887)
== 2023-07-14 03:38:25,598 filetools.py:823 INFO Downloaded file toolz_urls.html from url https://pypi.python.org/simple/toolz to /dev/shm/hpcsw/eb-69ibteyz/tmpj1nchxy1/toolz_urls.html
== 2023-07-14 03:38:25,598 filetools.py:855 INFO Successful download of file toolz_urls.html from url https://pypi.python.org/simple/toolz to path /dev/shm/hpcsw/eb-69ibteyz/tmpj1nchxy1/toolz_urls.html
== 2023-07-14 03:38:25,793 filetools.py:816 INFO File size for https://pypi.python.org/packages/cf/05/2008534bbaa716b46a2d795d7b54b999d0f7638fbb9ed0b6e87bfa934f84/toolz-0.12.0.tar.gz: 66264
== 2023-07-14 03:38:25,794 filetools.py:270 INFO Not showing progress bar for downloading small file (size 66264)
== 2023-07-14 03:38:25,798 filetools.py:823 INFO Downloaded file toolz-0.12.0.tar.gz from url https://pypi.python.org/packages/cf/05/2008534bbaa716b46a2d795d7b54b999d0f7638fbb9ed0b6e87bfa934f84/toolz-0.12.0.tar.gz to /software/sources/a/AlphaFold/extensions/toolz-0.12.0.tar.gz
== 2023-07-14 03:38:25,799 filetools.py:855 INFO Successful download of file toolz-0.12.0.tar.gz from url https://pypi.python.org/packages/cf/05/2008534bbaa716b46a2d795d7b54b999d0f7638fbb9ed0b6e87bfa934f84/toolz-0.12.0.tar.gz to path /software/sources/a/AlphaFold/extensions/toolz-0.12.0.tar.gz
== 2023-07-14 03:38:25,799 easyblock.py:939 INFO Successfully downloaded source file toolz-0.12.0.tar.gz from https://pypi.python.org/packages/cf/05/2008534bbaa716b46a2d795d7b54b999d0f7638fbb9ed0b6e87bfa934f84/toolz-0.12.0.tar.gz
== 2023-07-14 03:38:25,800 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/toolz-0.12.0.tar.gz: 5ca1991596816c576b02237ab3d29f0c
== 2023-07-14 03:38:25,800 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/toolz-0.12.0.tar.gz: 88c570861c440ee3f2f6037c4654613228ff40c93a6c25e0eba70d17282c6194
== 2023-07-14 03:38:25,801 easyblock.py:685 INFO Checksum for extension source toolz-0.12.0.tar.gz verified
== 2023-07-14 03:38:25,801 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:25,802 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for chex-0.1.6.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:25,802 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:25,803 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:26,089 filetools.py:816 INFO File size for https://pypi.python.org/simple/chex: 11391
== 2023-07-14 03:38:26,090 filetools.py:270 INFO Not showing progress bar for downloading small file (size 11391)
== 2023-07-14 03:38:26,093 filetools.py:823 INFO Downloaded file chex_urls.html from url https://pypi.python.org/simple/chex to /dev/shm/hpcsw/eb-69ibteyz/tmp7dbpsz89/chex_urls.html
== 2023-07-14 03:38:26,093 filetools.py:855 INFO Successful download of file chex_urls.html from url https://pypi.python.org/simple/chex to path /dev/shm/hpcsw/eb-69ibteyz/tmp7dbpsz89/chex_urls.html
== 2023-07-14 03:38:26,413 filetools.py:816 INFO File size for https://pypi.python.org/packages/8d/c2/5de4a61bcfc12e2f627f8af4383d084dcbd6e0d23d04a63ea7e7a1ec22f1/chex-0.1.6.tar.gz: 80002
== 2023-07-14 03:38:26,413 filetools.py:270 INFO Not showing progress bar for downloading small file (size 80002)
== 2023-07-14 03:38:26,418 filetools.py:823 INFO Downloaded file chex-0.1.6.tar.gz from url https://pypi.python.org/packages/8d/c2/5de4a61bcfc12e2f627f8af4383d084dcbd6e0d23d04a63ea7e7a1ec22f1/chex-0.1.6.tar.gz to /software/sources/a/AlphaFold/extensions/chex-0.1.6.tar.gz
== 2023-07-14 03:38:26,418 filetools.py:855 INFO Successful download of file chex-0.1.6.tar.gz from url https://pypi.python.org/packages/8d/c2/5de4a61bcfc12e2f627f8af4383d084dcbd6e0d23d04a63ea7e7a1ec22f1/chex-0.1.6.tar.gz to path /software/sources/a/AlphaFold/extensions/chex-0.1.6.tar.gz
== 2023-07-14 03:38:26,419 easyblock.py:939 INFO Successfully downloaded source file chex-0.1.6.tar.gz from https://pypi.python.org/packages/8d/c2/5de4a61bcfc12e2f627f8af4383d084dcbd6e0d23d04a63ea7e7a1ec22f1/chex-0.1.6.tar.gz
== 2023-07-14 03:38:26,419 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/chex-0.1.6.tar.gz: e6ca5c9a393eab9a41c6cf26b5254a79
== 2023-07-14 03:38:26,420 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/chex-0.1.6.tar.gz: adb5d2352b5f0d248ccf594be1b1bf9ee7a2bee2a57f0eac78547538d479b0e7
== 2023-07-14 03:38:26,421 easyblock.py:685 INFO Checksum for extension source chex-0.1.6.tar.gz verified
== 2023-07-14 03:38:26,421 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:26,422 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for tabulate-0.9.0.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:26,422 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:26,423 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:26,621 filetools.py:816 INFO File size for https://pypi.python.org/simple/tabulate: 9600
== 2023-07-14 03:38:26,621 filetools.py:270 INFO Not showing progress bar for downloading small file (size 9600)
== 2023-07-14 03:38:26,624 filetools.py:823 INFO Downloaded file tabulate_urls.html from url https://pypi.python.org/simple/tabulate to /dev/shm/hpcsw/eb-69ibteyz/tmp6kn4xgta/tabulate_urls.html
== 2023-07-14 03:38:26,624 filetools.py:855 INFO Successful download of file tabulate_urls.html from url https://pypi.python.org/simple/tabulate to path /dev/shm/hpcsw/eb-69ibteyz/tmp6kn4xgta/tabulate_urls.html
== 2023-07-14 03:38:26,841 filetools.py:816 INFO File size for https://pypi.python.org/packages/ec/fe/802052aecb21e3797b8f7902564ab6ea0d60ff8ca23952079064155d1ae1/tabulate-0.9.0.tar.gz: 81090
== 2023-07-14 03:38:26,841 filetools.py:270 INFO Not showing progress bar for downloading small file (size 81090)
== 2023-07-14 03:38:26,846 filetools.py:823 INFO Downloaded file tabulate-0.9.0.tar.gz from url https://pypi.python.org/packages/ec/fe/802052aecb21e3797b8f7902564ab6ea0d60ff8ca23952079064155d1ae1/tabulate-0.9.0.tar.gz to /software/sources/a/AlphaFold/extensions/tabulate-0.9.0.tar.gz
== 2023-07-14 03:38:26,846 filetools.py:855 INFO Successful download of file tabulate-0.9.0.tar.gz from url https://pypi.python.org/packages/ec/fe/802052aecb21e3797b8f7902564ab6ea0d60ff8ca23952079064155d1ae1/tabulate-0.9.0.tar.gz to path /software/sources/a/AlphaFold/extensions/tabulate-0.9.0.tar.gz
== 2023-07-14 03:38:26,846 easyblock.py:939 INFO Successfully downloaded source file tabulate-0.9.0.tar.gz from https://pypi.python.org/packages/ec/fe/802052aecb21e3797b8f7902564ab6ea0d60ff8ca23952079064155d1ae1/tabulate-0.9.0.tar.gz
== 2023-07-14 03:38:26,847 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/tabulate-0.9.0.tar.gz: 3b10bb64f8a06ca7549d3481b7e6c028
== 2023-07-14 03:38:26,848 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/tabulate-0.9.0.tar.gz: 0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c
== 2023-07-14 03:38:26,848 easyblock.py:685 INFO Checksum for extension source tabulate-0.9.0.tar.gz verified
== 2023-07-14 03:38:26,849 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:26,850 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for jmp-0.0.4.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:26,850 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:26,850 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:27,144 filetools.py:816 INFO File size for https://pypi.python.org/simple/jmp: 1967
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== 2023-07-14 03:38:27,147 filetools.py:823 INFO Downloaded file jmp_urls.html from url https://pypi.python.org/simple/jmp to /dev/shm/hpcsw/eb-69ibteyz/tmp1tz6w5qh/jmp_urls.html
== 2023-07-14 03:38:27,147 filetools.py:855 INFO Successful download of file jmp_urls.html from url https://pypi.python.org/simple/jmp to path /dev/shm/hpcsw/eb-69ibteyz/tmp1tz6w5qh/jmp_urls.html
== 2023-07-14 03:38:27,432 filetools.py:816 INFO File size for https://pypi.python.org/packages/ab/b0/e90fbbffef4b345329c878a69f0336d3edc5a1f9fcba193931aca2132d62/jmp-0.0.4.tar.gz: 18582
== 2023-07-14 03:38:27,433 filetools.py:270 INFO Not showing progress bar for downloading small file (size 18582)
== 2023-07-14 03:38:27,437 filetools.py:823 INFO Downloaded file jmp-0.0.4.tar.gz from url https://pypi.python.org/packages/ab/b0/e90fbbffef4b345329c878a69f0336d3edc5a1f9fcba193931aca2132d62/jmp-0.0.4.tar.gz to /software/sources/a/AlphaFold/extensions/jmp-0.0.4.tar.gz
== 2023-07-14 03:38:27,437 filetools.py:855 INFO Successful download of file jmp-0.0.4.tar.gz from url https://pypi.python.org/packages/ab/b0/e90fbbffef4b345329c878a69f0336d3edc5a1f9fcba193931aca2132d62/jmp-0.0.4.tar.gz to path /software/sources/a/AlphaFold/extensions/jmp-0.0.4.tar.gz
== 2023-07-14 03:38:27,438 easyblock.py:939 INFO Successfully downloaded source file jmp-0.0.4.tar.gz from https://pypi.python.org/packages/ab/b0/e90fbbffef4b345329c878a69f0336d3edc5a1f9fcba193931aca2132d62/jmp-0.0.4.tar.gz
== 2023-07-14 03:38:27,438 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/jmp-0.0.4.tar.gz: f524edec0db07383ee633aa77180abe8
== 2023-07-14 03:38:27,439 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/jmp-0.0.4.tar.gz: 5dfeb0fd7c7a9f72a70fff0aab9d0cbfae32a809c02f4037ff3485ceb33e1730
== 2023-07-14 03:38:27,439 easyblock.py:685 INFO Checksum for extension source jmp-0.0.4.tar.gz verified
== 2023-07-14 03:38:27,439 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:27,440 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for dm-haiku-0.0.9.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:27,440 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:27,441 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:27,932 filetools.py:816 INFO File size for https://github.com/deepmind/dm-haiku/archive/refs/tags/v0.0.9.tar.gz: None
== 2023-07-14 03:38:28,017 filetools.py:823 INFO Downloaded file dm-haiku-0.0.9.tar.gz from url https://github.com/deepmind/dm-haiku/archive/refs/tags/v0.0.9.tar.gz to /software/sources/a/AlphaFold/extensions/dm-haiku-0.0.9.tar.gz
== 2023-07-14 03:38:28,017 filetools.py:855 INFO Successful download of file dm-haiku-0.0.9.tar.gz from url https://github.com/deepmind/dm-haiku/archive/refs/tags/v0.0.9.tar.gz to path /software/sources/a/AlphaFold/extensions/dm-haiku-0.0.9.tar.gz
== 2023-07-14 03:38:28,017 easyblock.py:939 INFO Successfully downloaded source file dm-haiku-0.0.9.tar.gz from https://github.com/deepmind/dm-haiku/archive/refs/tags/v0.0.9.tar.gz
== 2023-07-14 03:38:28,021 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/dm-haiku-0.0.9.tar.gz: bd2a3579bc15d198e5c77d06308062a8
== 2023-07-14 03:38:28,023 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/dm-haiku-0.0.9.tar.gz: d550f07f5891ede30ada5faafde98f549ed1b8ceadb7a601cca3d81db7d82414
== 2023-07-14 03:38:28,025 easyblock.py:685 INFO Checksum for extension source dm-haiku-0.0.9.tar.gz verified
== 2023-07-14 03:38:28,025 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:28,026 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for dm-tree-0.1.8.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:28,026 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:28,026 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:28,299 filetools.py:816 INFO File size for https://pypi.python.org/simple/dm-tree: 45785
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== 2023-07-14 03:38:28,303 filetools.py:823 INFO Downloaded file dm-tree_urls.html from url https://pypi.python.org/simple/dm-tree to /dev/shm/hpcsw/eb-69ibteyz/tmp0eoyyrpk/dm-tree_urls.html
== 2023-07-14 03:38:28,303 filetools.py:855 INFO Successful download of file dm-tree_urls.html from url https://pypi.python.org/simple/dm-tree to path /dev/shm/hpcsw/eb-69ibteyz/tmp0eoyyrpk/dm-tree_urls.html
== 2023-07-14 03:38:28,510 filetools.py:816 INFO File size for https://pypi.python.org/packages/f8/6d/f1997aac42e0f550c1e952a0b920eaa0bfc4d27d0421499881b934b969fc/dm-tree-0.1.8.tar.gz: 35384
== 2023-07-14 03:38:28,511 filetools.py:270 INFO Not showing progress bar for downloading small file (size 35384)
== 2023-07-14 03:38:28,515 filetools.py:823 INFO Downloaded file dm-tree-0.1.8.tar.gz from url https://pypi.python.org/packages/f8/6d/f1997aac42e0f550c1e952a0b920eaa0bfc4d27d0421499881b934b969fc/dm-tree-0.1.8.tar.gz to /software/sources/a/AlphaFold/extensions/dm-tree-0.1.8.tar.gz
== 2023-07-14 03:38:28,515 filetools.py:855 INFO Successful download of file dm-tree-0.1.8.tar.gz from url https://pypi.python.org/packages/f8/6d/f1997aac42e0f550c1e952a0b920eaa0bfc4d27d0421499881b934b969fc/dm-tree-0.1.8.tar.gz to path /software/sources/a/AlphaFold/extensions/dm-tree-0.1.8.tar.gz
== 2023-07-14 03:38:28,516 easyblock.py:939 INFO Successfully downloaded source file dm-tree-0.1.8.tar.gz from https://pypi.python.org/packages/f8/6d/f1997aac42e0f550c1e952a0b920eaa0bfc4d27d0421499881b934b969fc/dm-tree-0.1.8.tar.gz
== 2023-07-14 03:38:28,516 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/dm-tree-0.1.8.tar.gz: 8b3f0b4de11eff132f08d6ab6ab22e74
== 2023-07-14 03:38:28,517 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/dm-tree-0.1.8.tar.gz: 0fcaabbb14e7980377439e7140bd05552739ca5e515ecb3119f234acee4b9430
== 2023-07-14 03:38:28,517 easyblock.py:685 INFO Checksum for extension source dm-tree-0.1.8.tar.gz verified
== 2023-07-14 03:38:28,518 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:28,519 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for websocket-client-1.5.1.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:28,519 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:28,519 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:28,722 filetools.py:816 INFO File size for https://pypi.python.org/simple/websocket-client: 35955
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== 2023-07-14 03:38:28,725 filetools.py:823 INFO Downloaded file websocket-client_urls.html from url https://pypi.python.org/simple/websocket-client to /dev/shm/hpcsw/eb-69ibteyz/tmp_0gugml5/websocket-client_urls.html
== 2023-07-14 03:38:28,725 filetools.py:855 INFO Successful download of file websocket-client_urls.html from url https://pypi.python.org/simple/websocket-client to path /dev/shm/hpcsw/eb-69ibteyz/tmp_0gugml5/websocket-client_urls.html
== 2023-07-14 03:38:28,941 filetools.py:816 INFO File size for https://pypi.python.org/packages/8b/94/696484b0c13234c91b316bc3d82d432f9b589a9ef09d016875a31c670b76/websocket-client-1.5.1.tar.gz: 49942
== 2023-07-14 03:38:28,942 filetools.py:270 INFO Not showing progress bar for downloading small file (size 49942)
== 2023-07-14 03:38:28,946 filetools.py:823 INFO Downloaded file websocket-client-1.5.1.tar.gz from url https://pypi.python.org/packages/8b/94/696484b0c13234c91b316bc3d82d432f9b589a9ef09d016875a31c670b76/websocket-client-1.5.1.tar.gz to /software/sources/a/AlphaFold/extensions/websocket-client-1.5.1.tar.gz
== 2023-07-14 03:38:28,946 filetools.py:855 INFO Successful download of file websocket-client-1.5.1.tar.gz from url https://pypi.python.org/packages/8b/94/696484b0c13234c91b316bc3d82d432f9b589a9ef09d016875a31c670b76/websocket-client-1.5.1.tar.gz to path /software/sources/a/AlphaFold/extensions/websocket-client-1.5.1.tar.gz
== 2023-07-14 03:38:28,947 easyblock.py:939 INFO Successfully downloaded source file websocket-client-1.5.1.tar.gz from https://pypi.python.org/packages/8b/94/696484b0c13234c91b316bc3d82d432f9b589a9ef09d016875a31c670b76/websocket-client-1.5.1.tar.gz
== 2023-07-14 03:38:28,947 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/websocket-client-1.5.1.tar.gz: 513fc7b70d098a87b63666b5d91fec25
== 2023-07-14 03:38:28,948 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/websocket-client-1.5.1.tar.gz: 3f09e6d8230892547132177f575a4e3e73cfdf06526e20cc02aa1c3b47184d40
== 2023-07-14 03:38:28,949 easyblock.py:685 INFO Checksum for extension source websocket-client-1.5.1.tar.gz verified
== 2023-07-14 03:38:28,949 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:28,950 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for docker-6.0.1.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:28,950 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:28,950 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:29,221 filetools.py:816 INFO File size for https://pypi.python.org/simple/docker: 34903
== 2023-07-14 03:38:29,222 filetools.py:270 INFO Not showing progress bar for downloading small file (size 34903)
== 2023-07-14 03:38:29,225 filetools.py:823 INFO Downloaded file docker_urls.html from url https://pypi.python.org/simple/docker to /dev/shm/hpcsw/eb-69ibteyz/tmpeg6u87mo/docker_urls.html
== 2023-07-14 03:38:29,225 filetools.py:855 INFO Successful download of file docker_urls.html from url https://pypi.python.org/simple/docker to path /dev/shm/hpcsw/eb-69ibteyz/tmpeg6u87mo/docker_urls.html
== 2023-07-14 03:38:29,436 filetools.py:816 INFO File size for https://pypi.python.org/packages/79/26/6609b51ecb418e12d1534d00b888ce7e108f38b47dc6cd589598d5c6aaa2/docker-6.0.1.tar.gz: 257911
== 2023-07-14 03:38:29,436 filetools.py:270 INFO Not showing progress bar for downloading small file (size 257911)
== 2023-07-14 03:38:29,454 filetools.py:823 INFO Downloaded file docker-6.0.1.tar.gz from url https://pypi.python.org/packages/79/26/6609b51ecb418e12d1534d00b888ce7e108f38b47dc6cd589598d5c6aaa2/docker-6.0.1.tar.gz to /software/sources/a/AlphaFold/extensions/docker-6.0.1.tar.gz
== 2023-07-14 03:38:29,459 filetools.py:855 INFO Successful download of file docker-6.0.1.tar.gz from url https://pypi.python.org/packages/79/26/6609b51ecb418e12d1534d00b888ce7e108f38b47dc6cd589598d5c6aaa2/docker-6.0.1.tar.gz to path /software/sources/a/AlphaFold/extensions/docker-6.0.1.tar.gz
== 2023-07-14 03:38:29,459 easyblock.py:939 INFO Successfully downloaded source file docker-6.0.1.tar.gz from https://pypi.python.org/packages/79/26/6609b51ecb418e12d1534d00b888ce7e108f38b47dc6cd589598d5c6aaa2/docker-6.0.1.tar.gz
== 2023-07-14 03:38:29,461 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/docker-6.0.1.tar.gz: 8e85e23ed30a3d07129e197d35e56eb4
== 2023-07-14 03:38:29,462 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/docker-6.0.1.tar.gz: 896c4282e5c7af5c45e8b683b0b0c33932974fe6e50fc6906a0a83616ab3da97
== 2023-07-14 03:38:29,464 easyblock.py:685 INFO Checksum for extension source docker-6.0.1.tar.gz verified
== 2023-07-14 03:38:29,464 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:29,465 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for immutabledict-2.2.3.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:29,465 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:29,465 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:29,740 filetools.py:816 INFO File size for https://pypi.python.org/simple/immutabledict: 9043
== 2023-07-14 03:38:29,740 filetools.py:270 INFO Not showing progress bar for downloading small file (size 9043)
== 2023-07-14 03:38:29,743 filetools.py:823 INFO Downloaded file immutabledict_urls.html from url https://pypi.python.org/simple/immutabledict to /dev/shm/hpcsw/eb-69ibteyz/tmp0hrnka6s/immutabledict_urls.html
== 2023-07-14 03:38:29,743 filetools.py:855 INFO Successful download of file immutabledict_urls.html from url https://pypi.python.org/simple/immutabledict to path /dev/shm/hpcsw/eb-69ibteyz/tmp0hrnka6s/immutabledict_urls.html
== 2023-07-14 03:38:29,951 filetools.py:816 INFO File size for https://pypi.python.org/packages/87/ef/de71c1a7311869f7e5b5298a5bbe5677d8f6d8056fe4491d88850ea57fb3/immutabledict-2.2.3.tar.gz: 3811
== 2023-07-14 03:38:29,952 filetools.py:270 INFO Not showing progress bar for downloading small file (size 3811)
== 2023-07-14 03:38:29,956 filetools.py:823 INFO Downloaded file immutabledict-2.2.3.tar.gz from url https://pypi.python.org/packages/87/ef/de71c1a7311869f7e5b5298a5bbe5677d8f6d8056fe4491d88850ea57fb3/immutabledict-2.2.3.tar.gz to /software/sources/a/AlphaFold/extensions/immutabledict-2.2.3.tar.gz
== 2023-07-14 03:38:29,956 filetools.py:855 INFO Successful download of file immutabledict-2.2.3.tar.gz from url https://pypi.python.org/packages/87/ef/de71c1a7311869f7e5b5298a5bbe5677d8f6d8056fe4491d88850ea57fb3/immutabledict-2.2.3.tar.gz to path /software/sources/a/AlphaFold/extensions/immutabledict-2.2.3.tar.gz
== 2023-07-14 03:38:29,956 easyblock.py:939 INFO Successfully downloaded source file immutabledict-2.2.3.tar.gz from https://pypi.python.org/packages/87/ef/de71c1a7311869f7e5b5298a5bbe5677d8f6d8056fe4491d88850ea57fb3/immutabledict-2.2.3.tar.gz
== 2023-07-14 03:38:29,957 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/immutabledict-2.2.3.tar.gz: 94fced1eb11e462d7f45df53ef416f9a
== 2023-07-14 03:38:29,957 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/immutabledict-2.2.3.tar.gz: 0e1e8a3f2b3ff062daa19795f947e9ec7a58add269d44e34d3ab4319e1343853
== 2023-07-14 03:38:29,957 easyblock.py:685 INFO Checksum for extension source immutabledict-2.2.3.tar.gz verified
== 2023-07-14 03:38:29,958 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:29,959 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for contextlib2-21.6.0.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:29,959 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:29,959 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:30,255 filetools.py:816 INFO File size for https://pypi.python.org/simple/contextlib2: 6373
== 2023-07-14 03:38:30,255 filetools.py:270 INFO Not showing progress bar for downloading small file (size 6373)
== 2023-07-14 03:38:30,258 filetools.py:823 INFO Downloaded file contextlib2_urls.html from url https://pypi.python.org/simple/contextlib2 to /dev/shm/hpcsw/eb-69ibteyz/tmpbaybfgsd/contextlib2_urls.html
== 2023-07-14 03:38:30,259 filetools.py:855 INFO Successful download of file contextlib2_urls.html from url https://pypi.python.org/simple/contextlib2 to path /dev/shm/hpcsw/eb-69ibteyz/tmpbaybfgsd/contextlib2_urls.html
== 2023-07-14 03:38:30,458 filetools.py:816 INFO File size for https://pypi.python.org/packages/c7/13/37ea7805ae3057992e96ecb1cffa2fa35c2ef4498543b846f90dd2348d8f/contextlib2-21.6.0.tar.gz: 43795
== 2023-07-14 03:38:30,458 filetools.py:270 INFO Not showing progress bar for downloading small file (size 43795)
== 2023-07-14 03:38:30,462 filetools.py:823 INFO Downloaded file contextlib2-21.6.0.tar.gz from url https://pypi.python.org/packages/c7/13/37ea7805ae3057992e96ecb1cffa2fa35c2ef4498543b846f90dd2348d8f/contextlib2-21.6.0.tar.gz to /software/sources/a/AlphaFold/extensions/contextlib2-21.6.0.tar.gz
== 2023-07-14 03:38:30,463 filetools.py:855 INFO Successful download of file contextlib2-21.6.0.tar.gz from url https://pypi.python.org/packages/c7/13/37ea7805ae3057992e96ecb1cffa2fa35c2ef4498543b846f90dd2348d8f/contextlib2-21.6.0.tar.gz to path /software/sources/a/AlphaFold/extensions/contextlib2-21.6.0.tar.gz
== 2023-07-14 03:38:30,463 easyblock.py:939 INFO Successfully downloaded source file contextlib2-21.6.0.tar.gz from https://pypi.python.org/packages/c7/13/37ea7805ae3057992e96ecb1cffa2fa35c2ef4498543b846f90dd2348d8f/contextlib2-21.6.0.tar.gz
== 2023-07-14 03:38:30,464 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/contextlib2-21.6.0.tar.gz: dcdca610617ab7fffc6fd99665567987
== 2023-07-14 03:38:30,464 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/contextlib2-21.6.0.tar.gz: ab1e2bfe1d01d968e1b7e8d9023bc51ef3509bba217bb730cee3827e1ee82869
== 2023-07-14 03:38:30,465 easyblock.py:685 INFO Checksum for extension source contextlib2-21.6.0.tar.gz verified
== 2023-07-14 03:38:30,465 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:30,466 easyblock.py:803 INFO Considering directory in which easyconfig file is located when searching for ml_collections-0.1.1.tar.gz: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold
== 2023-07-14 03:38:30,466 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /gpfs/easybuild/dev/software/EasyBuild/4.8.0/bin/eb
== 2023-07-14 03:38:30,466 tools.py:287 INFO Also considering installation prefix /gpfs/easybuild/dev/software/EasyBuild/4.8.0 (determined via path to 'eb' script)...
== 2023-07-14 03:38:30,747 filetools.py:816 INFO File size for https://pypi.python.org/simple/ml-collections: 1127
== 2023-07-14 03:38:30,747 filetools.py:270 INFO Not showing progress bar for downloading small file (size 1127)
== 2023-07-14 03:38:30,750 filetools.py:823 INFO Downloaded file ml_collections_urls.html from url https://pypi.python.org/simple/ml-collections to /dev/shm/hpcsw/eb-69ibteyz/tmp7yp3xv6a/ml_collections_urls.html
== 2023-07-14 03:38:30,750 filetools.py:855 INFO Successful download of file ml_collections_urls.html from url https://pypi.python.org/simple/ml-collections to path /dev/shm/hpcsw/eb-69ibteyz/tmp7yp3xv6a/ml_collections_urls.html
== 2023-07-14 03:38:30,972 filetools.py:816 INFO File size for https://pypi.python.org/packages/aa/ea/853aa32dfa1006d3eb43384712f35b8f2d6f0a757b8c779d40c29e3e8515/ml_collections-0.1.1.tar.gz: 77915
== 2023-07-14 03:38:30,972 filetools.py:270 INFO Not showing progress bar for downloading small file (size 77915)
== 2023-07-14 03:38:30,977 filetools.py:823 INFO Downloaded file ml_collections-0.1.1.tar.gz from url https://pypi.python.org/packages/aa/ea/853aa32dfa1006d3eb43384712f35b8f2d6f0a757b8c779d40c29e3e8515/ml_collections-0.1.1.tar.gz to /software/sources/a/AlphaFold/extensions/ml_collections-0.1.1.tar.gz
== 2023-07-14 03:38:30,977 filetools.py:855 INFO Successful download of file ml_collections-0.1.1.tar.gz from url https://pypi.python.org/packages/aa/ea/853aa32dfa1006d3eb43384712f35b8f2d6f0a757b8c779d40c29e3e8515/ml_collections-0.1.1.tar.gz to path /software/sources/a/AlphaFold/extensions/ml_collections-0.1.1.tar.gz
== 2023-07-14 03:38:30,977 easyblock.py:939 INFO Successfully downloaded source file ml_collections-0.1.1.tar.gz from https://pypi.python.org/packages/aa/ea/853aa32dfa1006d3eb43384712f35b8f2d6f0a757b8c779d40c29e3e8515/ml_collections-0.1.1.tar.gz
== 2023-07-14 03:38:30,978 easyblock.py:679 INFO md5 checksum for /software/sources/a/AlphaFold/extensions/ml_collections-0.1.1.tar.gz: 28028080e395d496e8267db1a429f5a4
== 2023-07-14 03:38:30,979 easyblock.py:679 INFO sha256 checksum for /software/sources/a/AlphaFold/extensions/ml_collections-0.1.1.tar.gz: 3fefcc72ec433aa1e5d32307a3e474bbb67f405be814ea52a2166bfc9dbe68cc
== 2023-07-14 03:38:30,979 easyblock.py:685 INFO Checksum for extension source ml_collections-0.1.1.tar.gz verified
== 2023-07-14 03:38:30,979 easyblock.py:532 INFO Fetched extension patches: []
== 2023-07-14 03:38:30,980 easyblock.py:2419 INFO Checking dirs that need to be created: ['/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', '/gpfs/easybuild/dev/modules/all/AlphaFold', '/gpfs/easybuild/dev/modules/bio/AlphaFold']
== 2023-07-14 03:38:30,980 filetools.py:1913 INFO Creating directory /gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:30,983 filetools.py:1913 INFO Creating directory /gpfs/easybuild/dev/modules/all/AlphaFold (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:30,984 filetools.py:1913 INFO Creating directory /gpfs/easybuild/dev/modules/bio/AlphaFold (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:30,985 build_log.py:267 INFO ... (took 8 secs)
== 2023-07-14 03:38:30,995 build_log.py:267 INFO creating build dir, resetting environment...
== 2023-07-14 03:38:31,003 easyblock.py:3926 INFO Starting ready step
== 2023-07-14 03:38:31,003 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:31,003 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:31,003 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:31,004 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:31,004 easyblock.py:3934 INFO Running method check_readiness_step part of step ready
== 2023-07-14 03:38:31,004 easyblock.py:2228 INFO Setting parallelism: 48
== 2023-07-14 03:38:31,228 easyblock.py:2280 WARNING Loaded modules detected: ['EasyBuild/4.8.0']
== 2023-07-14 03:38:31,229 easyblock.py:3934 INFO Running method make_builddir part of step ready
== 2023-07-14 03:38:31,229 filetools.py:1913 INFO Creating directory /dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold (parents: True, set_gid: False, sticky: False)
== 2023-07-14 03:38:31,229 easyblock.py:3934 INFO Running method reset_env part of step ready
== 2023-07-14 03:38:31,231 easyblock.py:3934 INFO Running method handle_iterate_opts part of step ready
== 2023-07-14 03:38:31,232 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:31,233 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:31,233 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:31,234 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:31,234 build_log.py:267 INFO unpacking...
== 2023-07-14 03:38:31,246 easyblock.py:3926 INFO Starting source step
== 2023-07-14 03:38:31,247 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:31,247 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:31,247 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:31,247 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:31,248 easyblock.py:3934 INFO Running method checksum_step part of step source
== 2023-07-14 03:38:31,278 easyblock.py:2437 INFO Checksum verification for /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz using be6778333fc110b8662b0e262798d6fc1663a14d9341469c6558b2d7771b8024 passed.
== 2023-07-14 03:38:31,278 easyblock.py:2437 INFO Checksum verification for /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt using 24510899eeb49167cffedec8fa45363a4d08279c0c637a403b452f7d0ac09451 passed.
== 2023-07-14 03:38:31,278 easyblock.py:2437 INFO Checksum verification for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_data-dep-paths.patch using 3826e357c35a58b2c8c0fab41ac8ae1b4d4c135162fe47ded577a13dade0c6f3 passed.
== 2023-07-14 03:38:31,278 easyblock.py:2437 INFO Checksum verification for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.0_n-cpu.patch using dfda4dd5f9aba19fe2b6eb9a0ec583d12dcefdfee8ab8803fc57ad48d582db04 passed.
== 2023-07-14 03:38:31,279 easyblock.py:2437 INFO Checksum verification for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-ColabFold-2.3.4_fix-scp-path.patch using 07bf81f987bc1ab67b7d71121396449289d3ffb499cddb62a135574f2ca7115a passed.
== 2023-07-14 03:38:31,279 easyblock.py:2437 INFO Checksum verification for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.0.1_setup_rm_tfcpu.patch using 1a2e4e843bd9a4d15ee39e6c37cc63ba281311cc7a0a5610f0e43b52ef93faac passed.
== 2023-07-14 03:38:31,279 easyblock.py:2437 INFO Checksum verification for /gpfs/easybuild/dev/software/EasyBuild/4.8.0/easybuild/easyconfigs/a/AlphaFold/AlphaFold-2.3.1_use_openmm_7.7.0.patch using d800bb085deac7edbe2d72916c1194043964aaf51b88a3b5a5016ab68a1090ec passed.
== 2023-07-14 03:38:31,279 easyblock.py:3934 INFO Running method extract_step part of step source
== 2023-07-14 03:38:31,279 easyblock.py:2549 INFO Unpacking source alphafold-colabfold-2.3.4.tar.gz
== 2023-07-14 03:38:31,279 run.py:236 INFO running cmd: tar xzf /software/sources/a/AlphaFold/alphafold-colabfold-2.3.4.tar.gz 
== 2023-07-14 03:38:31,514 easyblock.py:2549 INFO Unpacking source stereo_chemical_props-7102c6.txt
== 2023-07-14 03:38:31,515 run.py:236 INFO running cmd: cp /software/sources/a/AlphaFold/stereo_chemical_props-7102c6.txt . 
== 2023-07-14 03:38:31,544 build_log.py:267 INFO patching...
== 2023-07-14 03:38:31,559 easyblock.py:3926 INFO Starting patch step
== 2023-07-14 03:38:31,559 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:31,560 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:31,560 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:31,560 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:31,561 easyblock.py:3934 INFO Running method patch_step part of step patch
== 2023-07-14 03:38:31,561 build_log.py:267 INFO preparing...
== 2023-07-14 03:38:31,568 easyblock.py:3926 INFO Starting prepare step
== 2023-07-14 03:38:31,568 easyconfig.py:1690 INFO Generating template values...
== 2023-07-14 03:38:31,569 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-07-14 03:38:31,569 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-07-14 03:38:31,569 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='alphafold', builddir='/dev/shm/hpcsw/AlphaFold/2.3.4/foss-2022a-CUDA-11.7.0-ColabFold', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', cudamajver='11', cudaminver='7', cudashortver='11.7', cudaver='11.7.0', github_account='alphafold', installdir='/gpfs/easybuild/dev/software/AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', module_name='AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold', mpi_cmd_prefix='mpirun -n 1', name='AlphaFold', nameletter='A', nameletterlower='a', namelower='alphafold', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', toolchain_name='foss', toolchain_version='2022a', version='2.3.4', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='-CUDA-11.7.0-ColabFold'
== 2023-07-14 03:38:31,569 easyblock.py:3934 INFO Running method prepare_step part of step prepare
== 2023-07-14 03:38:31,570 modules.py:626 INFO Checking whether Bazel/5.1.1-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:31,571 modules.py:631 INFO Module Bazel/5.1.1-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,571 modules.py:654 INFO Result for existence check of Bazel/5.1.1-GCCcore-11.3.0 module: True
== 2023-07-14 03:38:31,571 modules.py:626 INFO Checking whether CMake/3.23.1-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:31,571 modules.py:631 INFO Module CMake/3.23.1-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,571 modules.py:654 INFO Result for existence check of CMake/3.23.1-GCCcore-11.3.0 module: True
== 2023-07-14 03:38:31,571 modules.py:626 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:31,571 modules.py:631 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,571 modules.py:654 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True
== 2023-07-14 03:38:31,571 modules.py:626 INFO Checking whether CUDA/11.7.0 exists...
== 2023-07-14 03:38:31,571 modules.py:631 INFO Module CUDA/11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,571 modules.py:654 INFO Result for existence check of CUDA/11.7.0 module: True
== 2023-07-14 03:38:31,572 modules.py:626 INFO Checking whether SciPy-bundle/2022.05-foss-2022a exists...
== 2023-07-14 03:38:31,572 modules.py:631 INFO Module SciPy-bundle/2022.05-foss-2022a exists (found in list of available modules)
== 2023-07-14 03:38:31,572 modules.py:654 INFO Result for existence check of SciPy-bundle/2022.05-foss-2022a module: True
== 2023-07-14 03:38:31,572 modules.py:626 INFO Checking whether PyYAML/6.0-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:31,572 modules.py:631 INFO Module PyYAML/6.0-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,572 modules.py:654 INFO Result for existence check of PyYAML/6.0-GCCcore-11.3.0 module: True
== 2023-07-14 03:38:31,572 modules.py:626 INFO Checking whether TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,585 modules.py:631 INFO Module TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,586 modules.py:654 INFO Result for existence check of TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,586 modules.py:626 INFO Checking whether Biopython/1.79-foss-2022a exists...
== 2023-07-14 03:38:31,586 modules.py:631 INFO Module Biopython/1.79-foss-2022a exists (found in list of available modules)
== 2023-07-14 03:38:31,586 modules.py:654 INFO Result for existence check of Biopython/1.79-foss-2022a module: True
== 2023-07-14 03:38:31,586 modules.py:626 INFO Checking whether HH-suite/3.3.0-gompi-2022a exists...
== 2023-07-14 03:38:31,586 modules.py:631 INFO Module HH-suite/3.3.0-gompi-2022a exists (found in list of available modules)
== 2023-07-14 03:38:31,586 modules.py:654 INFO Result for existence check of HH-suite/3.3.0-gompi-2022a module: True
== 2023-07-14 03:38:31,586 modules.py:626 INFO Checking whether HMMER/3.3.2-gompi-2022a exists...
== 2023-07-14 03:38:31,586 modules.py:631 INFO Module HMMER/3.3.2-gompi-2022a exists (found in list of available modules)
== 2023-07-14 03:38:31,586 modules.py:654 INFO Result for existence check of HMMER/3.3.2-gompi-2022a module: True
== 2023-07-14 03:38:31,587 modules.py:626 INFO Checking whether Kalign/3.3.5-GCCcore-11.3.0 exists...
== 2023-07-14 03:38:31,587 modules.py:631 INFO Module Kalign/3.3.5-GCCcore-11.3.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,587 modules.py:654 INFO Result for existence check of Kalign/3.3.5-GCCcore-11.3.0 module: True
== 2023-07-14 03:38:31,587 modules.py:626 INFO Checking whether jax/0.3.25-foss-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,587 modules.py:631 INFO Module jax/0.3.25-foss-2022a-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,587 modules.py:654 INFO Result for existence check of jax/0.3.25-foss-2022a-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,587 modules.py:626 INFO Checking whether UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,587 modules.py:631 INFO Module UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,587 modules.py:654 INFO Result for existence check of UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,587 modules.py:626 INFO Checking whether cuDNN/8.4.1.50-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,587 modules.py:631 INFO Module cuDNN/8.4.1.50-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,588 modules.py:654 INFO Result for existence check of cuDNN/8.4.1.50-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,588 modules.py:626 INFO Checking whether NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,588 modules.py:631 INFO Module NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,588 modules.py:654 INFO Result for existence check of NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,588 modules.py:626 INFO Checking whether OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 exists...
== 2023-07-14 03:38:31,588 modules.py:631 INFO Module OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 exists (found in list of available modules)
== 2023-07-14 03:38:31,588 modules.py:654 INFO Result for existence check of OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 module: True
== 2023-07-14 03:38:31,588 modules.py:626 INFO Checking whether foss/2022a exists...
== 2023-07-14 03:38:31,589 modules.py:634 INFO Module foss/2022a not found in list of available modules, checking via 'module show'...
== 2023-07-14 03:38:31,852 modules.py:654 INFO Result for existence check of foss/2022a module: True
== 2023-07-14 03:38:33,049 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/Java/11.0.18/lib:/.singularity.d/libs')
== 2023-07-14 03:38:33,426 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:33,836 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:34,228 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:34,629 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/.singularity.d/libs')
== 2023-07-14 03:38:35,056 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:35,689 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:36,846 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/DB/18.1.40-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/expat/2.4.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/DB/18.1.40-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/expat/2.4.8-GCCcore-11.3.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:38,044 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/Kalign/3.3.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/DB/18.1.40-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/expat/2.4.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/Kalign/3.3.5-GCCcore-11.3.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:39,939 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/Kalign/3.3.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/DB/18.1.40-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/expat/2.4.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:40,574 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /gpfs/easybuild/dev/software/Kalign/3.3.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/DB/18.1.40-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/expat/2.4.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/snappy/1.1.9-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpng/1.6.37-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/protobuf/3.19.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/nsync/1.25.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/LMDB/0.9.29-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libjpeg-turbo/2.1.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/JsonCpp/1.9.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ICU/71.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/giflib/5.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/flatbuffers/2.0.7-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/double-conversion/3.2.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/HDF5/1.12.2-gompi-2022a/lib:/gpfs/easybuild/dev/software/Szip/2.1.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/GDRCopy/2.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cuDNN/8.4.1.50-CUDA-11.7.0/lib:/gpfs/easybuild/dev/software/libyaml/0.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SciPy-bundle/2022.05-foss-2022a/lib/python3.10/site-packages/numpy/core/lib:/gpfs/easybuild/dev/software/CUDA/11.7.0/nvvm/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/extras/CUPTI/lib64:/gpfs/easybuild/dev/software/CUDA/11.7.0/lib:/gpfs/easybuild/dev/software/Python/3.10.4-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libffi/3.4.2-GCCcore-11.3.0/lib64:/gpfs/easybuild/dev/software/GMP/6.2.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/SQLite/3.38.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Tcl/8.6.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libreadline/8.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libarchive/3.6.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/cURL/7.83.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/bzip2/1.0.8-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/ncurses/6.3-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/Java/11.0.18/lib:/gpfs/easybuild/dev/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib:/gpfs/easybuild/dev/software/FFTW.MPI/3.3.10-gompi-2022a/lib:/gpfs/easybuild/dev/software/FFTW/3.3.10-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/OpenBLAS/0.3.20-GCC-11.3.0/lib:/opt/pbs/lib:/gpfs/easybuild/dev/software/OpenMPI/4.1.4-GCC-11.3.0/lib:/gpfs/easybuild/dev/software/UCC/1.0.0-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/PMIx/4.1.2-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libfabric/1.15.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/UCX/1.12.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libevent/2.1.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/OpenSSL/1.1/lib:/gpfs/easybuild/dev/software/hwloc/2.7.1-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libpciaccess/0.16-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/libxml2/2.9.13-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/XZ/5.2.5-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/numactl/2.0.14-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/binutils/2.38-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/zlib/1.2.12-GCCcore-11.3.0/lib:/gpfs/easybuild/dev/software/GCCcore/11.3.0/lib64:/.singularity.d/libs (previous value: '/gpfs/easybuild/dev/software/NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0/lib:/.singularity.d/libs')
== 2023-07-14 03:38:41,484 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/dev/software/EasyBuild/4.8.0/lib/python3.6/site-packages/easybuild/base/exceptions.py:126 in __init__): Module command '/usr/share/lmod/lmod/libexec/lmod python load OpenMM/8.0.0-foss-2022a-CUDA-11.7.0' failed with exit code 1; stderr: Lmod has detected the following error: The following module(s) are unknown:
"SWIG/4.0.2-GCCcore-11.3.0"

Please check the spelling or version number. Also try "module spider ..."
It is also possible your cache file is out-of-date; it may help to try:
  $ module --ignore_cache load "SWIG/4.0.2-GCCcore-11.3.0"

Also make sure that all modulefiles written in TCL start with the string #%Module



; stdout: _mlstatus = False
 (at easybuild/dev/software/EasyBuild/4.8.0/lib/python3.6/site-packages/easybuild/tools/modules.py:839 in run_module)
== 2023-07-14 03:38:41,487 build_log.py:267 INFO ... (took 9 secs)
== 2023-07-14 03:38:41,497 filetools.py:2014 INFO Removing lock /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock...
== 2023-07-14 03:38:41,499 filetools.py:383 INFO Path /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock successfully removed.
== 2023-07-14 03:38:41,499 filetools.py:2018 INFO Lock removed: /gpfs/easybuild/dev/software/.locks/_gpfs_easybuild_dev_software_AlphaFold_2.3.4-foss-2022a-CUDA-11.7.0-ColabFold.lock
== 2023-07-14 03:38:41,499 easyblock.py:4257 WARNING build failed (first 300 chars): Module command '/usr/share/lmod/lmod/libexec/lmod python load OpenMM/8.0.0-foss-2022a-CUDA-11.7.0' failed with exit code 1; stderr: Lmod has detected the following error: The following module(s) are unknown:
"SWIG/4.0.2-GCCcore-11.3.0"

Please check the spelling or version number. Also try "module s
== 2023-07-14 03:38:41,500 easyblock.py:328 INFO Closing log for application name AlphaFold version 2.3.4