rxaviers

People

:bowtie:	😄 :smile:	😆 :laughing:
😊 :blush:	😃 :smiley:	☺️ :relaxed:
😏 :smirk:	😍 :heart_eyes:	😘 :kissing_heart:
😚 :kissing_closed_eyes:	😳 :flushed:	😌 :relieved:
😆 :satisfied:	😁 :grin:	😉 :wink:
😜 :stuck_out_tongue_winking_eye:	😝 :stuck_out_tongue_closed_eyes:	😀 :grinning:
😗 :kissing:	😙 :kissing_smiling_eyes:	😛 :stuck_out_tongue:

myusuf3

To remove a submodule you need to:

• Delete the relevant section from the .gitmodules file.
• Stage the .gitmodules changes git add .gitmodules
• Delete the relevant section from .git/config.
• Run git rm --cached path_to_submodule (no trailing slash).
• Run rm -rf .git/modules/path_to_submodule (no trailing slash).
• Commit git commit -m "Removed submodule "
• Delete the now untracked submodule files rm -rf path_to_submodule

dergachev

OS X Screencast to animated GIF

This gist shows how to create a GIF screencast using only free OS X tools: QuickTime, ffmpeg, and gifsicle.

Instructions

To capture the video (filesize: 19MB), using the free "QuickTime Player" application:

Svidro

Collections of scripts harvested mainly from Pete, but also picked up from the forums

TOC

Accessing dynamic measurements.groovy - Most annotation measurements are dynamically created when you click on the annotation, and 
are not accessible through the standard getMeasurement function. This is a way around that.

Affine transformation.groovy - access more accurate measurements for the affine transformation used in the image alignment (m5/m6+)

Alignment of local cells.groovy - check neighborhood for similarly aligned cells

z3tt

#### 1. Sign up at GitHub.com ################################################

## If you do not have a GitHub account, sign up here:
## https://github.com/join

# ----------------------------------------------------------------------------

#### 2. Install git ##########################################################

## If you do not have git installed, please do so: 

CristinaSolana

1. Clone your fork:

git clone git@github.com:YOUR-USERNAME/YOUR-FORKED-REPO.git

2. Add remote from original repository in your forked repository:

cd into/cloned/fork-repo
git remote add upstream git://github.com/ORIGINAL-DEV-USERNAME/REPO-YOU-FORKED-FROM.git
git fetch upstream

cruftlord

Source: http://willandorla.com/will/2011/01/convert-folder-into-git-submodule/

1. Clone new repository

$ git clone --no-hardlinks original-repo copied-repo

2. Filter out the files you want to keep and remove the others

bgauduch

Setup multiple git identities & git user informations

/!\ Be very carrefull in your setup : any misconfiguration make all the git config to fail silently ! Go trought this guide step by step and it should be fine 😉

Setup multiple git ssh identities for git

• Generate your SSH keys as per your git provider documentation.
• Add each public SSH keys to your git providers acounts.
• In your ~/.ssh/config, set each ssh key for each repository as in this exemple:

heiswayi

First Method

Deleting the .git folder may cause problems in our git repository. If we want to delete all of our commits history, but keep the code in its current state, try this:

# Check out to a temporary branch:
git checkout --orphan TEMP_BRANCH

# Add all the files:
git add -A

petebankhead

/**
 * QuPath script to calculate areas (e.g. of tumor) based upon classified cells only.
 *
 * It works by using a distance transform applied to binary images generated from the
 * objects of each class, and then assigns each pixel to the closest object.
 *
 * Having done this, new annotations are generated for these regions.
 *
 * WARNINGS!
 * - This will remove *all* previous annotations & replace them with new annotations