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April 10, 2024 02:26
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| Sending build context to Docker daemon 459.8kB | |
| Step 1/34 : FROM nvidia/cuda:11.3.1-devel-ubuntu20.04 | |
| ---> aa720ad693a9 | |
| Step 2/34 : ARG USERNAME=vscode | |
| ---> Running in c68378d38303 | |
| Removing intermediate container c68378d38303 | |
| ---> 21c22aa12cb6 | |
| Step 3/34 : ARG USER_UID=1000 | |
| ---> Running in 8428fccdde14 | |
| Removing intermediate container 8428fccdde14 | |
| ---> 2a22f26e45d6 | |
| Step 4/34 : ARG USER_GID=$USER_UID | |
| ---> Running in acb850dc4988 | |
| Removing intermediate container acb850dc4988 | |
| ---> c7afa28c0bd4 | |
| Step 5/34 : RUN groupadd --gid $USER_GID $USERNAME && useradd --uid $USER_UID --gid $USER_GID -m $USERNAME && apt-get update && apt-get install -y sudo && echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME && chmod 0440 /etc/sudoers.d/$USERNAME | |
| ---> Running in 9f54fdbf266f | |
| Get:1 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 InRelease [1581 B] | |
| Get:2 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB] | |
| Get:3 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] | |
| Get:4 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 Packages [1496 kB] | |
| Get:5 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [3546 kB] | |
| Get:6 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [3483 kB] | |
| Get:7 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [1194 kB] | |
| Get:8 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [29.8 kB] | |
| Get:9 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] | |
| Get:10 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB] | |
| Get:11 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB] | |
| Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB] | |
| Get:13 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB] | |
| Get:14 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB] | |
| Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [4021 kB] | |
| Get:16 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [3634 kB] | |
| Get:17 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1489 kB] | |
| Get:18 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [32.5 kB] | |
| Get:19 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB] | |
| Get:20 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB] | |
| Fetched 32.4 MB in 2s (13.9 MB/s) | |
| Reading package lists... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following NEW packages will be installed: | |
| sudo | |
| 0 upgraded, 1 newly installed, 0 to remove and 48 not upgraded. | |
| Need to get 515 kB of archives. | |
| After this operation, 2257 kB of additional disk space will be used. | |
| Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 sudo amd64 1.8.31-1ubuntu1.5 [515 kB] | |
| [91mdebconf: delaying package configuration, since apt-utils is not installed | |
| [0mFetched 515 kB in 0s (5305 kB/s) | |
| Selecting previously unselected package sudo. | |
| (Reading database ... | |
| (Reading database ... 5% | |
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| (Reading database ... 100% | |
| (Reading database ... 13209 files and directories currently installed.) | |
| Preparing to unpack .../sudo_1.8.31-1ubuntu1.5_amd64.deb ... | |
| Unpacking sudo (1.8.31-1ubuntu1.5) ... | |
| Setting up sudo (1.8.31-1ubuntu1.5) ... | |
| Removing intermediate container 9f54fdbf266f | |
| ---> c0606fd9546d | |
| Step 6/34 : RUN apt-get update && apt-get install -yq zsh sudo curl wget jq vim git-core gnupg locales && apt-get clean | |
| ---> Running in 11fe1e07dcb2 | |
| Hit:1 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 InRelease | |
| Hit:2 http://archive.ubuntu.com/ubuntu focal InRelease | |
| Hit:3 http://security.ubuntu.com/ubuntu focal-security InRelease | |
| Hit:4 http://archive.ubuntu.com/ubuntu focal-updates InRelease | |
| Hit:5 http://archive.ubuntu.com/ubuntu focal-backports InRelease | |
| Reading package lists... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| gnupg is already the newest version (2.2.19-3ubuntu2.2). | |
| gnupg set to manually installed. | |
| sudo is already the newest version (1.8.31-1ubuntu1.5). | |
| The following additional packages will be installed: | |
| alsa-topology-conf alsa-ucm-conf file git-man krb5-locales less libasound2 | |
| libasound2-data libbrotli1 libbsd0 libcanberra0 libcap2 libcbor0.6 | |
| libcurl3-gnutls libcurl4 libedit2 liberror-perl libexpat1 libfido2-1 libgpm2 | |
| libgssapi-krb5-2 libjq1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 | |
| libltdl7 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libogg0 libonig5 | |
| libpsl5 libpython3.8 libpython3.8-minimal libpython3.8-stdlib librtmp1 | |
| libssh-4 libtdb1 libvorbis0a libvorbisfile3 libx11-6 libx11-data libxau6 | |
| libxcb1 libxdmcp6 libxext6 libxmuu1 mime-support openssh-client publicsuffix | |
| sound-theme-freedesktop vim-common vim-runtime xauth xxd zsh-common | |
| Suggested packages: | |
| gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email | |
| git-gui gitk gitweb git-cvs git-mediawiki git-svn libasound2-plugins | |
| alsa-utils libcanberra-gtk0 libcanberra-pulse gpm krb5-doc krb5-user | |
| keychain libpam-ssh monkeysphere ssh-askpass ctags vim-doc vim-scripts | |
| zsh-doc | |
| The following NEW packages will be installed: | |
| alsa-topology-conf alsa-ucm-conf curl file git git-man jq krb5-locales less | |
| libasound2 libasound2-data libbrotli1 libbsd0 libcanberra0 libcap2 | |
| libcbor0.6 libcurl3-gnutls libcurl4 libedit2 liberror-perl libexpat1 | |
| libfido2-1 libgpm2 libgssapi-krb5-2 libjq1 libk5crypto3 libkeyutils1 | |
| libkrb5-3 libkrb5support0 libltdl7 libmagic-mgc libmagic1 libmpdec2 | |
| libnghttp2-14 libogg0 libonig5 libpsl5 libpython3.8 libpython3.8-minimal | |
| libpython3.8-stdlib librtmp1 libssh-4 libtdb1 libvorbis0a libvorbisfile3 | |
| libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxmuu1 locales | |
| mime-support openssh-client publicsuffix sound-theme-freedesktop vim | |
| vim-common vim-runtime wget xauth xxd zsh zsh-common | |
| 0 upgraded, 65 newly installed, 0 to remove and 48 not upgraded. | |
| Need to get 31.1 MB of archives. | |
| After this operation, 156 MB of additional disk space will be used. | |
| Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.38-4 [218 kB] | |
| Get:2 http://archive.ubuntu.com/ubuntu focal/main amd64 libmagic1 amd64 1:5.38-4 [75.9 kB] | |
| Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 file amd64 1:5.38-4 [23.3 kB] | |
| Get:4 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 less amd64 551-1ubuntu0.2 [123 kB] | |
| Get:5 http://archive.ubuntu.com/ubuntu focal/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] | |
| Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcap2 amd64 1:2.32-1ubuntu0.1 [15.8 kB] | |
| Get:7 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libexpat1 amd64 2.2.9-1ubuntu0.6 [74.6 kB] | |
| Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 libmpdec2 amd64 2.4.2-3 [81.1 kB] | |
| Get:9 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libpython3.8-minimal amd64 3.8.10-0ubuntu1~20.04.9 [718 kB] | |
| Get:10 http://archive.ubuntu.com/ubuntu focal/main amd64 mime-support all 3.64ubuntu1 [30.6 kB] | |
| Get:11 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libpython3.8-stdlib amd64 3.8.10-0ubuntu1~20.04.9 [1674 kB] | |
| Get:12 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 locales all 2.31-0ubuntu9.14 [3871 kB] | |
| Get:13 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 xxd amd64 2:8.1.2269-1ubuntu5.22 [53.2 kB] | |
| Get:14 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 vim-common all 2:8.1.2269-1ubuntu5.22 [88.2 kB] | |
| Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-locales all 1.17-6ubuntu4.4 [11.5 kB] | |
| Get:16 http://archive.ubuntu.com/ubuntu focal/main amd64 libcbor0.6 amd64 0.6.0-0ubuntu1 [21.1 kB] | |
| Get:17 http://archive.ubuntu.com/ubuntu focal/main amd64 libedit2 amd64 3.1-20191231-1 [87.0 kB] | |
| Get:18 http://archive.ubuntu.com/ubuntu focal/main amd64 libfido2-1 amd64 1.3.1-1ubuntu2 [47.9 kB] | |
| Get:19 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5support0 amd64 1.17-6ubuntu4.4 [31.0 kB] | |
| Get:20 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libk5crypto3 amd64 1.17-6ubuntu4.4 [79.9 kB] | |
| Get:21 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libkeyutils1 amd64 1.6-6ubuntu1.1 [10.3 kB] | |
| Get:22 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-3 amd64 1.17-6ubuntu4.4 [330 kB] | |
| Get:23 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssapi-krb5-2 amd64 1.17-6ubuntu4.4 [121 kB] | |
| Get:24 http://archive.ubuntu.com/ubuntu focal/main amd64 libpsl5 amd64 0.21.0-1ubuntu1 [51.5 kB] | |
| Get:25 http://archive.ubuntu.com/ubuntu focal/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] | |
| Get:26 http://archive.ubuntu.com/ubuntu focal/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] | |
| Get:27 http://archive.ubuntu.com/ubuntu focal/main amd64 libxcb1 amd64 1.14-2 [44.7 kB] | |
| Get:28 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libx11-data all 2:1.6.9-2ubuntu1.6 [114 kB] | |
| Get:29 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libx11-6 amd64 2:1.6.9-2ubuntu1.6 [577 kB] | |
| Get:30 http://archive.ubuntu.com/ubuntu focal/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] | |
| Get:31 http://archive.ubuntu.com/ubuntu focal/main amd64 libxmuu1 amd64 2:1.1.3-0ubuntu1 [9728 B] | |
| Get:32 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 openssh-client amd64 1:8.2p1-4ubuntu0.11 [670 kB] | |
| Get:33 http://archive.ubuntu.com/ubuntu focal/main amd64 publicsuffix all 20200303.0012-1 [111 kB] | |
| Get:34 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 wget amd64 1.20.3-1ubuntu2 [348 kB] | |
| Get:35 http://archive.ubuntu.com/ubuntu focal/main amd64 xauth amd64 1:1.1-0ubuntu1 [25.0 kB] | |
| Get:36 http://archive.ubuntu.com/ubuntu focal/main amd64 alsa-topology-conf all 1.2.2-1 [7364 B] | |
| Get:37 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 alsa-ucm-conf all 1.2.2-1ubuntu0.13 [27.0 kB] | |
| Get:38 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libbrotli1 amd64 1.0.7-6ubuntu0.1 [267 kB] | |
| Get:39 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libnghttp2-14 amd64 1.40.0-1ubuntu0.2 [79.4 kB] | |
| Get:40 http://archive.ubuntu.com/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] | |
| Get:41 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-4 amd64 0.9.3-2ubuntu2.5 [171 kB] | |
| Get:42 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4 amd64 7.68.0-1ubuntu2.22 [235 kB] | |
| Get:43 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 curl amd64 7.68.0-1ubuntu2.22 [161 kB] | |
| Get:44 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl3-gnutls amd64 7.68.0-1ubuntu2.22 [233 kB] | |
| Get:45 http://archive.ubuntu.com/ubuntu focal/main amd64 liberror-perl all 0.17029-1 [26.5 kB] | |
| Get:46 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 git-man all 1:2.25.1-1ubuntu3.11 [887 kB] | |
| Get:47 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 git amd64 1:2.25.1-1ubuntu3.11 [4605 kB] | |
| Get:48 http://archive.ubuntu.com/ubuntu focal/universe amd64 libonig5 amd64 6.9.4-1 [142 kB] | |
| Get:49 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq1 amd64 1.6-1ubuntu0.20.04.1 [121 kB] | |
| Get:50 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 jq amd64 1.6-1ubuntu0.20.04.1 [50.2 kB] | |
| Get:51 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libasound2-data all 1.2.2-2.1ubuntu2.5 [20.1 kB] | |
| Get:52 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libasound2 amd64 1.2.2-2.1ubuntu2.5 [335 kB] | |
| Get:53 http://archive.ubuntu.com/ubuntu focal/main amd64 libltdl7 amd64 2.4.6-14 [38.5 kB] | |
| Get:54 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libtdb1 amd64 1.4.5-0ubuntu0.20.04.1 [44.2 kB] | |
| Get:55 http://archive.ubuntu.com/ubuntu focal/main amd64 libogg0 amd64 1.3.4-0ubuntu1 [24.0 kB] | |
| Get:56 http://archive.ubuntu.com/ubuntu focal/main amd64 libvorbis0a amd64 1.3.6-2ubuntu1 [87.0 kB] | |
| Get:57 http://archive.ubuntu.com/ubuntu focal/main amd64 libvorbisfile3 amd64 1.3.6-2ubuntu1 [16.1 kB] | |
| Get:58 http://archive.ubuntu.com/ubuntu focal/main amd64 sound-theme-freedesktop all 0.8-2ubuntu1 [384 kB] | |
| Get:59 http://archive.ubuntu.com/ubuntu focal/main amd64 libcanberra0 amd64 0.30-7ubuntu1 [38.1 kB] | |
| Get:60 http://archive.ubuntu.com/ubuntu focal/main amd64 libgpm2 amd64 1.20.7-5 [15.1 kB] | |
| Get:61 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 libpython3.8 amd64 3.8.10-0ubuntu1~20.04.9 [1625 kB] | |
| Get:62 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 vim-runtime all 2:8.1.2269-1ubuntu5.22 [5877 kB] | |
| Get:63 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 vim amd64 2:8.1.2269-1ubuntu5.22 [1243 kB] | |
| Get:64 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 zsh-common all 5.8-3ubuntu1.1 [3743 kB] | |
| Get:65 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 zsh amd64 5.8-3ubuntu1.1 [707 kB] | |
| [91mdebconf: delaying package configuration, since apt-utils is not installed | |
| [0mFetched 31.1 MB in 6s (5369 kB/s) | |
| Selecting previously unselected package libmagic-mgc. | |
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| (Reading database ... 13267 files and directories currently installed.) | |
| Preparing to unpack .../00-libmagic-mgc_1%3a5.38-4_amd64.deb ... | |
| Unpacking libmagic-mgc (1:5.38-4) ... | |
| Selecting previously unselected package libmagic1:amd64. | |
| Preparing to unpack .../01-libmagic1_1%3a5.38-4_amd64.deb ... | |
| Unpacking libmagic1:amd64 (1:5.38-4) ... | |
| Selecting previously unselected package file. | |
| Preparing to unpack .../02-file_1%3a5.38-4_amd64.deb ... | |
| Unpacking file (1:5.38-4) ... | |
| Selecting previously unselected package less. | |
| Preparing to unpack .../03-less_551-1ubuntu0.2_amd64.deb ... | |
| Unpacking less (551-1ubuntu0.2) ... | |
| Selecting previously unselected package libbsd0:amd64. | |
| Preparing to unpack .../04-libbsd0_0.10.0-1_amd64.deb ... | |
| Unpacking libbsd0:amd64 (0.10.0-1) ... | |
| Selecting previously unselected package libcap2:amd64. | |
| Preparing to unpack .../05-libcap2_1%3a2.32-1ubuntu0.1_amd64.deb ... | |
| Unpacking libcap2:amd64 (1:2.32-1ubuntu0.1) ... | |
| Selecting previously unselected package libexpat1:amd64. | |
| Preparing to unpack .../06-libexpat1_2.2.9-1ubuntu0.6_amd64.deb ... | |
| Unpacking libexpat1:amd64 (2.2.9-1ubuntu0.6) ... | |
| Selecting previously unselected package libmpdec2:amd64. | |
| Preparing to unpack .../07-libmpdec2_2.4.2-3_amd64.deb ... | |
| Unpacking libmpdec2:amd64 (2.4.2-3) ... | |
| Selecting previously unselected package libpython3.8-minimal:amd64. | |
| Preparing to unpack .../08-libpython3.8-minimal_3.8.10-0ubuntu1~20.04.9_amd64.deb ... | |
| Unpacking libpython3.8-minimal:amd64 (3.8.10-0ubuntu1~20.04.9) ... | |
| Selecting previously unselected package mime-support. | |
| Preparing to unpack .../09-mime-support_3.64ubuntu1_all.deb ... | |
| Unpacking mime-support (3.64ubuntu1) ... | |
| Selecting previously unselected package libpython3.8-stdlib:amd64. | |
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| Unpacking libpython3.8-stdlib:amd64 (3.8.10-0ubuntu1~20.04.9) ... | |
| Selecting previously unselected package locales. | |
| Preparing to unpack .../11-locales_2.31-0ubuntu9.14_all.deb ... | |
| Unpacking locales (2.31-0ubuntu9.14) ... | |
| Selecting previously unselected package xxd. | |
| Preparing to unpack .../12-xxd_2%3a8.1.2269-1ubuntu5.22_amd64.deb ... | |
| Unpacking xxd (2:8.1.2269-1ubuntu5.22) ... | |
| Selecting previously unselected package vim-common. | |
| Preparing to unpack .../13-vim-common_2%3a8.1.2269-1ubuntu5.22_all.deb ... | |
| Unpacking vim-common (2:8.1.2269-1ubuntu5.22) ... | |
| Selecting previously unselected package krb5-locales. | |
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| Unpacking krb5-locales (1.17-6ubuntu4.4) ... | |
| Selecting previously unselected package libcbor0.6:amd64. | |
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| Unpacking libcbor0.6:amd64 (0.6.0-0ubuntu1) ... | |
| Selecting previously unselected package libedit2:amd64. | |
| Preparing to unpack .../16-libedit2_3.1-20191231-1_amd64.deb ... | |
| Unpacking libedit2:amd64 (3.1-20191231-1) ... | |
| Selecting previously unselected package libfido2-1:amd64. | |
| Preparing to unpack .../17-libfido2-1_1.3.1-1ubuntu2_amd64.deb ... | |
| Unpacking libfido2-1:amd64 (1.3.1-1ubuntu2) ... | |
| Selecting previously unselected package libkrb5support0:amd64. | |
| Preparing to unpack .../18-libkrb5support0_1.17-6ubuntu4.4_amd64.deb ... | |
| Unpacking libkrb5support0:amd64 (1.17-6ubuntu4.4) ... | |
| Selecting previously unselected package libk5crypto3:amd64. | |
| Preparing to unpack .../19-libk5crypto3_1.17-6ubuntu4.4_amd64.deb ... | |
| Unpacking libk5crypto3:amd64 (1.17-6ubuntu4.4) ... | |
| Selecting previously unselected package libkeyutils1:amd64. | |
| Preparing to unpack .../20-libkeyutils1_1.6-6ubuntu1.1_amd64.deb ... | |
| Unpacking libkeyutils1:amd64 (1.6-6ubuntu1.1) ... | |
| Selecting previously unselected package libkrb5-3:amd64. | |
| Preparing to unpack .../21-libkrb5-3_1.17-6ubuntu4.4_amd64.deb ... | |
| Unpacking libkrb5-3:amd64 (1.17-6ubuntu4.4) ... | |
| Selecting previously unselected package libgssapi-krb5-2:amd64. | |
| Preparing to unpack .../22-libgssapi-krb5-2_1.17-6ubuntu4.4_amd64.deb ... | |
| Unpacking libgssapi-krb5-2:amd64 (1.17-6ubuntu4.4) ... | |
| Selecting previously unselected package libpsl5:amd64. | |
| Preparing to unpack .../23-libpsl5_0.21.0-1ubuntu1_amd64.deb ... | |
| Unpacking libpsl5:amd64 (0.21.0-1ubuntu1) ... | |
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| Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... | |
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| Unpacking libxcb1:amd64 (1.14-2) ... | |
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| Selecting previously unselected package vim-runtime. | |
| Preparing to unpack .../61-vim-runtime_2%3a8.1.2269-1ubuntu5.22_all.deb ... | |
| Adding 'diversion of /usr/share/vim/vim81/doc/help.txt to /usr/share/vim/vim81/doc/help.txt.vim-tiny by vim-runtime' | |
| Adding 'diversion of /usr/share/vim/vim81/doc/tags to /usr/share/vim/vim81/doc/tags.vim-tiny by vim-runtime' | |
| Unpacking vim-runtime (2:8.1.2269-1ubuntu5.22) ... | |
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| Unpacking zsh (5.8-3ubuntu1.1) ... | |
| Setting up libexpat1:amd64 (2.2.9-1ubuntu0.6) ... | |
| Setting up libxau6:amd64 (1:1.0.9-0ubuntu1) ... | |
| Setting up libkeyutils1:amd64 (1.6-6ubuntu1.1) ... | |
| Setting up libpsl5:amd64 (0.21.0-1ubuntu1) ... | |
| Setting up libpython3.8-minimal:amd64 (3.8.10-0ubuntu1~20.04.9) ... | |
| Setting up libgpm2:amd64 (1.20.7-5) ... | |
| Setting up libogg0:amd64 (1.3.4-0ubuntu1) ... | |
| Setting up mime-support (3.64ubuntu1) ... | |
| Setting up wget (1.20.3-1ubuntu2) ... | |
| Setting up alsa-ucm-conf (1.2.2-1ubuntu0.13) ... | |
| Setting up libmagic-mgc (1:5.38-4) ... | |
| Setting up zsh-common (5.8-3ubuntu1.1) ... | |
| Setting up libtdb1:amd64 (1.4.5-0ubuntu0.20.04.1) ... | |
| Setting up libbrotli1:amd64 (1.0.7-6ubuntu0.1) ... | |
| Setting up libnghttp2-14:amd64 (1.40.0-1ubuntu0.2) ... | |
| Setting up libmagic1:amd64 (1:5.38-4) ... | |
| Setting up less (551-1ubuntu0.2) ... | |
| Setting up krb5-locales (1.17-6ubuntu4.4) ... | |
| Setting up file (1:5.38-4) ... | |
| Setting up libcbor0.6:amd64 (0.6.0-0ubuntu1) ... | |
| Setting up locales (2.31-0ubuntu9.14) ... | |
| debconf: unable to initialize frontend: Dialog | |
| debconf: (TERM is not set, so the dialog frontend is not usable.) | |
| debconf: falling back to frontend: Readline | |
| Generating locales (this might take a while)... | |
| Generation complete. | |
| Setting up xxd (2:8.1.2269-1ubuntu5.22) ... | |
| Setting up libcap2:amd64 (1:2.32-1ubuntu0.1) ... | |
| Setting up libkrb5support0:amd64 (1.17-6ubuntu4.4) ... | |
| Setting up liberror-perl (0.17029-1) ... | |
| Setting up libasound2-data (1.2.2-2.1ubuntu2.5) ... | |
| Setting up vim-common (2:8.1.2269-1ubuntu5.22) ... | |
| Setting up libx11-data (2:1.6.9-2ubuntu1.6) ... | |
| Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... | |
| Setting up libvorbis0a:amd64 (1.3.6-2ubuntu1) ... | |
| Setting up libk5crypto3:amd64 (1.17-6ubuntu4.4) ... | |
| Setting up libltdl7:amd64 (2.4.6-14) ... | |
| Setting up alsa-topology-conf (1.2.2-1) ... | |
| Setting up sound-theme-freedesktop (0.8-2ubuntu1) ... | |
| Setting up libasound2:amd64 (1.2.2-2.1ubuntu2.5) ... | |
| Setting up git-man (1:2.25.1-1ubuntu3.11) ... | |
| Setting up libkrb5-3:amd64 (1.17-6ubuntu4.4) ... | |
| Setting up zsh (5.8-3ubuntu1.1) ... | |
| Setting up libmpdec2:amd64 (2.4.2-3) ... | |
| Setting up vim-runtime (2:8.1.2269-1ubuntu5.22) ... | |
| Setting up libpython3.8-stdlib:amd64 (3.8.10-0ubuntu1~20.04.9) ... | |
| Setting up libfido2-1:amd64 (1.3.1-1ubuntu2) ... | |
| Setting up libbsd0:amd64 (0.10.0-1) ... | |
| Setting up publicsuffix (20200303.0012-1) ... | |
| Setting up libonig5:amd64 (6.9.4-1) ... | |
| Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... | |
| Setting up libxcb1:amd64 (1.14-2) ... | |
| Setting up libjq1:amd64 (1.6-1ubuntu0.20.04.1) ... | |
| Setting up libedit2:amd64 (3.1-20191231-1) ... | |
| Setting up libvorbisfile3:amd64 (1.3.6-2ubuntu1) ... | |
| Setting up libpython3.8:amd64 (3.8.10-0ubuntu1~20.04.9) ... | |
| Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4.4) ... | |
| Setting up libssh-4:amd64 (0.9.3-2ubuntu2.5) ... | |
| Setting up jq (1.6-1ubuntu0.20.04.1) ... | |
| Setting up libcurl4:amd64 (7.68.0-1ubuntu2.22) ... | |
| Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1.6) ... | |
| Setting up curl (7.68.0-1ubuntu2.22) ... | |
| Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... | |
| Setting up libcanberra0:amd64 (0.30-7ubuntu1) ... | |
| Setting up vim (2:8.1.2269-1ubuntu5.22) ... | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/da/man1/vi.1.gz because associated file /usr/share/man/da/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/de/man1/vi.1.gz because associated file /usr/share/man/de/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/fr/man1/vi.1.gz because associated file /usr/share/man/fr/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/it/man1/vi.1.gz because associated file /usr/share/man/it/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ja/man1/vi.1.gz because associated file /usr/share/man/ja/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/pl/man1/vi.1.gz because associated file /usr/share/man/pl/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ru/man1/vi.1.gz because associated file /usr/share/man/ru/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/vi.1.gz because associated file /usr/share/man/man1/vim.1.gz (of link group vi) doesn't exist | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/da/man1/view.1.gz because associated file /usr/share/man/da/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/de/man1/view.1.gz because associated file /usr/share/man/de/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/fr/man1/view.1.gz because associated file /usr/share/man/fr/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/it/man1/view.1.gz because associated file /usr/share/man/it/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ja/man1/view.1.gz because associated file /usr/share/man/ja/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/pl/man1/view.1.gz because associated file /usr/share/man/pl/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ru/man1/view.1.gz because associated file /usr/share/man/ru/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/view.1.gz because associated file /usr/share/man/man1/vim.1.gz (of link group view) doesn't exist | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/da/man1/ex.1.gz because associated file /usr/share/man/da/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/de/man1/ex.1.gz because associated file /usr/share/man/de/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/fr/man1/ex.1.gz because associated file /usr/share/man/fr/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/it/man1/ex.1.gz because associated file /usr/share/man/it/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ja/man1/ex.1.gz because associated file /usr/share/man/ja/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/pl/man1/ex.1.gz because associated file /usr/share/man/pl/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ru/man1/ex.1.gz because associated file /usr/share/man/ru/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/ex.1.gz because associated file /usr/share/man/man1/vim.1.gz (of link group ex) doesn't exist | |
| update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/editor (editor) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/da/man1/editor.1.gz because associated file /usr/share/man/da/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/de/man1/editor.1.gz because associated file /usr/share/man/de/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/fr/man1/editor.1.gz because associated file /usr/share/man/fr/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/it/man1/editor.1.gz because associated file /usr/share/man/it/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ja/man1/editor.1.gz because associated file /usr/share/man/ja/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/pl/man1/editor.1.gz because associated file /usr/share/man/pl/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/ru/man1/editor.1.gz because associated file /usr/share/man/ru/man1/vim.1.gz (of link group editor) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/editor.1.gz because associated file /usr/share/man/man1/vim.1.gz (of link group editor) doesn't exist | |
| Setting up openssh-client (1:8.2p1-4ubuntu0.11) ... | |
| Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... | |
| Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu2.22) ... | |
| Setting up git (1:2.25.1-1ubuntu3.11) ... | |
| Setting up xauth (1:1.1-0ubuntu1) ... | |
| Processing triggers for libc-bin (2.31-0ubuntu9.12) ... | |
| Removing intermediate container 11fe1e07dcb2 | |
| ---> 5af331bba96b | |
| Step 7/34 : RUN sh -c "$(wget -O- https://github.com/deluan/zsh-in-docker/releases/download/v1.1.5/zsh-in-docker.sh)" -- -t robbyrussell | |
| ---> Running in a70750260628 | |
| [91m--2024-04-10 02:06:46-- https://github.com/deluan/zsh-in-docker/releases/download/v1.1.5/zsh-in-docker.sh | |
| [0m[91mResolving github.com (github.com)... [0m[91m140.82.114.3 | |
| Connecting to github.com (github.com)|140.82.114.3|:443... [0m[91mconnected. | |
| [0m[91mHTTP request sent, awaiting response... [0m[91m302 Found | |
| Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/207162804/4f842594-dfb3-4ce4-9f53-68586ce54ac5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20240410%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240410T020646Z&X-Amz-Expires=300&X-Amz-Signature=53362deebe3b1f42790b512f1e7b51777f669150f402342608405b2922ba2012&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=207162804&response-content-disposition=attachment%3B%20filename%3Dzsh-in-docker.sh&response-content-type=application%2Foctet-stream [following] | |
| --2024-04-10 02:06:46-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/207162804/4f842594-dfb3-4ce4-9f53-68586ce54ac5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20240410%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240410T020646Z&X-Amz-Expires=300&X-Amz-Signature=53362deebe3b1f42790b512f1e7b51777f669150f402342608405b2922ba2012&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=207162804&response-content-disposition=attachment%3B%20filename%3Dzsh-in-docker.sh&response-content-type=application%2Foctet-stream | |
| Resolving objects.githubusercontent.com (objects.githubusercontent.com)... [0m[91m185.199.111.133, 185.199.108.133, 185.199.109.133, ... | |
| Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.111.133|:443... [0m[91mconnected. | |
| [0m[91mHTTP request sent, awaiting response... [0m[91m200 OK | |
| Length: 5313 (5.2K) [application/octet-stream] | |
| Saving to: 'STDOUT' | |
| [0m[91m | |
| 0K ..[0m[91m..[0m[91m. [0m[91m 100% 88.7M=0s | |
| [0m[91m2024-04-10 02:06:46 (88.7 MB/s) - written to stdout [5313/5313] | |
| [0m | |
| Installing Oh-My-Zsh with: | |
| THEME = robbyrussell | |
| PLUGINS = | |
| ###### Installing dependencies for ubuntu | |
| Hit:1 http://archive.ubuntu.com/ubuntu focal InRelease | |
| Hit:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease | |
| Hit:3 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 InRelease | |
| Hit:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease | |
| Hit:5 http://security.ubuntu.com/ubuntu focal-security InRelease | |
| Reading package lists... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| curl is already the newest version (7.68.0-1ubuntu2.22). | |
| git is already the newest version (1:2.25.1-1ubuntu3.11). | |
| locales is already the newest version (2.31-0ubuntu9.14). | |
| zsh is already the newest version (5.8-3ubuntu1.1). | |
| 0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded. | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following NEW packages will be installed: | |
| locales-all | |
| 0 upgraded, 1 newly installed, 0 to remove and 48 not upgraded. | |
| Need to get 10.6 MB of archives. | |
| After this operation, 227 MB of additional disk space will be used. | |
| Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 locales-all amd64 2.31-0ubuntu9.14 [10.6 MB] | |
| [91mdebconf: delaying package configuration, since apt-utils is not installed | |
| [0mFetched 10.6 MB in 1s (10.2 MB/s) | |
| Selecting previously unselected package locales-all. | |
| (Reading database ... | |
| (Reading database ... 5% | |
| (Reading database ... 10% | |
| (Reading database ... 15% | |
| (Reading database ... 20% | |
| (Reading database ... 25% | |
| (Reading database ... 30% | |
| (Reading database ... 35% | |
| (Reading database ... 40% | |
| (Reading database ... 45% | |
| (Reading database ... 50% | |
| (Reading database ... 55% | |
| (Reading database ... 60% | |
| (Reading database ... 65% | |
| (Reading database ... 70% | |
| (Reading database ... 75% | |
| (Reading database ... 80% | |
| (Reading database ... 85% | |
| (Reading database ... 90% | |
| (Reading database ... 95% | |
| (Reading database ... 100% | |
| (Reading database ... 19849 files and directories currently installed.) | |
| Preparing to unpack .../locales-all_2.31-0ubuntu9.14_amd64.deb ... | |
| Unpacking locales-all (2.31-0ubuntu9.14) ... | |
| Setting up locales-all (2.31-0ubuntu9.14) ... | |
| Generating locales (this might take a while)... | |
| en_US.UTF-8... done | |
| Generation complete. | |
| [91m % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 0 0 [0m[91m 0 0 0 0 0 0 --:--:-- [0m[91m--:--:-- --:--:-- [0m[91m 0[0m[91m | |
| 100 18381 100 18381 0 0 326k 0 --:--:-- --:--:-- --:--:-- 326k | |
| [0mCloning Oh My Zsh... | |
| [91mFrom https://github.com/ohmyzsh/ohmyzsh | |
| * [new branch] master -> origin/master | |
| [0mBranch 'master' set up to track remote branch 'master' from 'origin'. | |
| [91mAlready on 'master' | |
| [0m/tmp | |
| Looking for an existing zsh config... | |
| Using the Oh My Zsh template file and adding it to /root/.zshrc. | |
| __ __ | |
| ____ / /_ ____ ___ __ __ ____ _____/ /_ | |
| / __ \/ __ \ / __ `__ \/ / / / /_ / / ___/ __ \ | |
| / /_/ / / / / / / / / / / /_/ / / /_(__ ) / / / | |
| \____/_/ /_/ /_/ /_/ /_/\__, / /___/____/_/ /_/ | |
| /____/ ....is now installed! | |
| Before you scream Oh My Zsh! look over the `.zshrc` file to select plugins, themes, and options. | |
| • Follow us on Twitter: https://twitter.com/ohmyzsh | |
| • Join our Discord community: https://discord.gg/ohmyzsh | |
| • Get stickers, t-shirts, coffee mugs and more: https://shop.planetargon.com/collections/oh-my-zsh | |
| Run zsh to try it out. | |
| Removing intermediate container a70750260628 | |
| ---> cbeb36b0ebff | |
| Step 8/34 : RUN sudo chsh -s /bin/zsh | |
| ---> Running in 3e7ded98f2f3 | |
| Removing intermediate container 3e7ded98f2f3 | |
| ---> 352b473c9953 | |
| Step 9/34 : ARG CONDA_VER=latest | |
| ---> Running in 8eedd890052f | |
| Removing intermediate container 8eedd890052f | |
| ---> a42ea23107c8 | |
| Step 10/34 : ARG OS_TYPE=x86_64 | |
| ---> Running in 995f065fd24d | |
| Removing intermediate container 995f065fd24d | |
| ---> c36b17c07ab5 | |
| Step 11/34 : RUN curl -LO "http://repo.continuum.io/miniconda/Miniconda3-${CONDA_VER}-Linux-${OS_TYPE}.sh" | |
| ---> Running in 92a52fb522e9 | |
| [91m % Total % Received % Xferd Average Speed Time Time Time Current | |
| [0m[91m Dload Upload Total Spent Left Speed | |
| 0 [0m[91m 0 0 0 [0m[91m 0 [0m[91m0 0[0m[91m 0[0m[91m --:--:[0m[91m-- --:--:[0m[91m-- --:--[0m[91m:-- [0m[91m 0[0m[91m | |
| 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 | |
| [0m[91m | |
| 100 137M 100 137M 0 0 189M 0 --:--:-- --:--:-- --:--:-- 189M | |
| [0mRemoving intermediate container 92a52fb522e9 | |
| ---> e0156e46bc68 | |
| Step 12/34 : RUN bash Miniconda3-${CONDA_VER}-Linux-${OS_TYPE}.sh -p /miniconda -b | |
| ---> Running in 9f27159b01c5 | |
| PREFIX=/miniconda | |
| Unpacking payload ... | |
| [91m | |
| 0%| | 0/73 [00:00<?, ?it/s][0m[91m | |
| Extracting : sqlite-3.41.2-h5eee18b_0.conda: 0%| | 0/73 [00:00<?, ?it/s] | |
| Extracting : distro-1.8.0-py312h06a4308_0.conda: 1%|▏ | 1/73 [00:00<00:01, 47.24it/s][0m[91m | |
| Extracting : pluggy-1.0.0-py312h06a4308_1.conda: 3%|▎ | 2/73 [00:00<00:00, 94.07it/s][0m[91m | |
| Extracting : bzip2-1.0.8-h7b6447c_0.conda: 4%|▍ | 3/73 [00:00<00:00, 136.56it/s] [0m[91m | |
| Extracting : libgomp-11.2.0-h1234567_1.conda: 5%|▌ | 4/73 [00:00<00:00, 126.72it/s][0m[91m | |
| Extracting : fmt-9.1.0-hdb19cb5_0.conda: 7%|▋ | 5/73 [00:00<00:00, 157.88it/s] [0m[91m | |
| Extracting : brotli-python-1.0.9-py312h6a678d5_7.conda: 8%|▊ | 6/73 [00:00<00:00, 183.89it/s][0m[91m | |
| Extracting : ld_impl_linux-64-2.38-h1181459_1.conda: 10%|▉ | 7/73 [00:00<00:00, 166.30it/s] [0m[91m | |
| Extracting : lz4-c-1.9.4-h6a678d5_0.conda: 11%|█ | 8/73 [00:00<00:00, 189.40it/s] [0m[91m | |
| Extracting : xz-5.4.5-h5eee18b_0.conda: 12%|█▏ | 9/73 [00:00<00:00, 88.30it/s] | |
| Extracting : xz-5.4.5-h5eee18b_0.conda: 14%|█▎ | 10/73 [00:00<00:00, 98.05it/s][0m[91m | |
| Extracting : libssh2-1.10.0-hdbd6064_2.conda: 14%|█▎ | 10/73 [00:00<00:00, 98.05it/s] | |
| Extracting : wheel-0.41.2-py312h06a4308_0.conda: 15%|█▌ | 11/73 [00:00<00:00, 98.05it/s] | |
| Extracting : _libgcc_mutex-0.1-main.conda: 16%|█▋ | 12/73 [00:00<00:00, 98.05it/s] [0m[91m | |
| Extracting : conda-24.1.2-py312h06a4308_0.conda: 18%|█▊ | 13/73 [00:00<00:00, 98.05it/s] | |
| Extracting : _openmp_mutex-5.1-1_gnu.conda: 19%|█▉ | 14/73 [00:00<00:00, 98.05it/s] [0m[91m | |
| Extracting : libsolv-0.7.24-he621ea3_0.conda: 21%|██ | 15/73 [00:00<00:00, 98.05it/s][0m[91m | |
| Extracting : menuinst-2.0.2-py312h06a4308_0.conda: 22%|██▏ | 16/73 [00:00<00:00, 98.05it/s][0m[91m | |
| Extracting : conda-libmamba-solver-23.12.0-pyhd3eb1b0_1.conda: 23%|██▎ | 17/73 [00:00<00:00, 98.05it/s][0m[91m | |
| Extracting : pycosat-0.6.6-py312h5eee18b_0.conda: 25%|██▍ | 18/73 [00:00<00:00, 98.05it/s] [0m[91m | |
| Extracting : icu-73.1-h6a678d5_0.conda: 26%|██▌ | 19/73 [00:00<00:00, 98.05it/s] | |
| Extracting : icu-73.1-h6a678d5_0.conda: 27%|██▋ | 20/73 [00:00<00:01, 52.83it/s][0m[91m | |
| Extracting : ncurses-6.4-h6a678d5_0.conda: 27%|██▋ | 20/73 [00:00<00:01, 52.83it/s] | |
| Extracting : pysocks-1.7.1-py312h06a4308_0.conda: 29%|██▉ | 21/73 [00:00<00:00, 52.83it/s][0m[91m | |
| Extracting : pybind11-abi-4-hd3eb1b0_1.conda: 30%|███ | 22/73 [00:00<00:00, 52.83it/s] [0m[91m | |
| Extracting : conda-package-streaming-0.9.0-py312h06a4308_0.conda: 32%|███▏ | 23/73 [00:00<00:00, 52.83it/s][0m[91m | |
| Extracting : pcre2-10.42-hebb0a14_0.conda: 33%|███▎ | 24/73 [00:00<00:00, 52.83it/s] [0m[91m | |
| Extracting : libarchive-3.6.2-h6ac8c49_2.conda: 34%|███▍ | 25/73 [00:00<00:00, 52.83it/s][0m[91m | |
| Extracting : ruamel.yaml-0.17.21-py312h5eee18b_0.conda: 36%|███▌ | 26/73 [00:00<00:00, 52.83it/s][0m[91m | |
| Extracting : ruamel.yaml-0.17.21-py312h5eee18b_0.conda: 37%|███▋ | 27/73 [00:00<00:01, 43.48it/s][0m[91m | |
| Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 37%|███▋ | 27/73 [00:00<00:01, 43.48it/s][0m[91m | |
| Extracting : libstdcxx-ng-11.2.0-h1234567_1.conda: 38%|███▊ | 28/73 [00:00<00:01, 43.48it/s] [0m[91m | |
| Extracting : conda-content-trust-0.2.0-py312h06a4308_0.conda: 40%|███▉ | 29/73 [00:00<00:01, 43.48it/s][0m[91m | |
| Extracting : libedit-3.1.20230828-h5eee18b_0.conda: 41%|████ | 30/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : krb5-1.20.1-h143b758_1.conda: 42%|████▏ | 31/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : truststore-0.8.0-py312h06a4308_0.conda: 44%|████▍ | 32/73 [00:00<00:00, 43.48it/s][0m[91m | |
| Extracting : pycparser-2.21-pyhd3eb1b0_0.conda: 45%|████▌ | 33/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : setuptools-68.2.2-py312h06a4308_0.conda: 47%|████▋ | 34/73 [00:00<00:00, 43.48it/s][0m[91m | |
| Extracting : boltons-23.0.0-py312h06a4308_0.conda: 48%|████▊ | 35/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : libcurl-8.5.0-h251f7ec_0.conda: 49%|████▉ | 36/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : tqdm-4.65.0-py312he106c6f_0.conda: 51%|█████ | 37/73 [00:00<00:00, 43.48it/s][0m[91m | |
| Extracting : idna-3.4-py312h06a4308_0.conda: 52%|█████▏ | 38/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : readline-8.2-h5eee18b_0.conda: 53%|█████▎ | 39/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : zlib-1.2.13-h5eee18b_0.conda: 55%|█████▍ | 40/73 [00:00<00:00, 43.48it/s] [0m[91m | |
| Extracting : tk-8.6.12-h1ccaba5_0.conda: 56%|█████▌ | 41/73 [00:00<00:00, 43.48it/s] | |
| Extracting : platformdirs-3.10.0-py312h06a4308_0.conda: 58%|█████▊ | 42/73 [00:00<00:00, 43.48it/s][0m[91m | |
| Extracting : python-3.12.1-h996f2a0_0.conda: 59%|█████▉ | 43/73 [00:01<00:00, 43.48it/s] | |
| Extracting : python-3.12.1-h996f2a0_0.conda: 60%|██████ | 44/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : archspec-0.2.1-pyhd3eb1b0_0.conda: 60%|██████ | 44/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : requests-2.31.0-py312h06a4308_1.conda: 62%|██████▏ | 45/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : openssl-3.0.13-h7f8727e_0.conda: 63%|██████▎ | 46/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : urllib3-2.1.0-py312h06a4308_1.conda: 64%|██████▍ | 47/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : ca-certificates-2023.12.12-h06a4308_0.conda: 66%|██████▌ | 48/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libuuid-1.41.5-h5eee18b_0.conda: 67%|██████▋ | 49/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : jsonpatch-1.32-pyhd3eb1b0_0.conda: 68%|██████▊ | 50/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libffi-3.4.4-h6a678d5_0.conda: 70%|██████▉ | 51/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : packaging-23.1-py312h06a4308_0.conda: 71%|███████ | 52/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libmamba-1.5.3-haf1ee3a_0.conda: 73%|███████▎ | 53/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : c-ares-1.19.1-h5eee18b_0.conda: 74%|███████▍ | 54/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : libev-4.33-h7f8727e_1.conda: 75%|███████▌ | 55/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : tzdata-2023d-h04d1e81_0.conda: 77%|███████▋ | 56/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : jsonpointer-2.1-pyhd3eb1b0_0.conda: 78%|███████▊ | 57/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libxml2-2.10.4-hf1b16e4_1.conda: 79%|███████▉ | 58/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : pip-23.3.1-py312h06a4308_0.conda: 81%|████████ | 59/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : yaml-cpp-0.8.0-h6a678d5_0.conda: 82%|████████▏ | 60/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : conda-package-handling-2.2.0-py312h06a4308_0.conda: 84%|████████▎ | 61/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : expat-2.5.0-h6a678d5_0.conda: 85%|████████▍ | 62/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : libmambapy-1.5.3-py312h2dafd23_0.conda: 86%|████████▋ | 63/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : certifi-2024.2.2-py312h06a4308_0.conda: 88%|████████▊ | 64/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : reproc-14.2.4-h295c915_1.conda: 89%|████████▉ | 65/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : cffi-1.16.0-py312h5eee18b_0.conda: 90%|█████████ | 66/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : zstandard-0.19.0-py312h5eee18b_0.conda: 92%|█████████▏| 67/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : cryptography-41.0.7-py312hdda0065_0.conda: 93%|█████████▎| 68/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libgcc-ng-11.2.0-h1234567_1.conda: 95%|█████████▍| 69/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : zstd-1.5.5-hc292b87_0.conda: 96%|█████████▌| 70/73 [00:01<00:00, 31.79it/s] [0m[91m | |
| Extracting : reproc-cpp-14.2.4-h295c915_1.conda: 97%|█████████▋| 71/73 [00:01<00:00, 31.79it/s][0m[91m | |
| Extracting : libnghttp2-1.57.0-h2d74bed_0.conda: 99%|█████████▊| 72/73 [00:01<00:00, 31.79it/s][0m[91m | |
| [0m | |
| Installing base environment... | |
| Downloading and Extracting Packages: ...working... done | |
| Downloading and Extracting Packages: ...working... done | |
| Preparing transaction: ...working... done | |
| Executing transaction: ...working... done | |
| installation finished. | |
| Removing intermediate container 9f27159b01c5 | |
| ---> c2384b441712 | |
| Step 13/34 : RUN rm Miniconda3-${CONDA_VER}-Linux-${OS_TYPE}.sh | |
| ---> Running in 1571854ab763 | |
| Removing intermediate container 1571854ab763 | |
| ---> 3bba3eacef1c | |
| Step 14/34 : ENV PATH=/miniconda/bin:${PATH} | |
| ---> Running in 552e88b6fa96 | |
| Removing intermediate container 552e88b6fa96 | |
| ---> 864eff8f6a25 | |
| Step 15/34 : RUN conda update -y conda | |
| ---> Running in 337eb3e78241 | |
| Channels: | |
| - defaults | |
| Platform: linux-64 | |
| Collecting package metadata (repodata.json): ...working... done | |
| Solving environment: ...working... done | |
| ## Package Plan ## | |
| environment location: /miniconda | |
| added / updated specs: | |
| - conda | |
| The following packages will be downloaded: | |
| package | build | |
| ---------------------------|----------------- | |
| archspec-0.2.3 | pyhd3eb1b0_0 47 KB | |
| ca-certificates-2024.3.11 | h06a4308_0 127 KB | |
| conda-24.3.0 | py312h06a4308_0 1.2 MB | |
| ------------------------------------------------------------ | |
| Total: 1.4 MB | |
| The following packages will be UPDATED: | |
| archspec 0.2.1-pyhd3eb1b0_0 --> 0.2.3-pyhd3eb1b0_0 | |
| ca-certificates 2023.12.12-h06a4308_0 --> 2024.3.11-h06a4308_0 | |
| conda 24.1.2-py312h06a4308_0 --> 24.3.0-py312h06a4308_0 | |
| Downloading and Extracting Packages: ...working... done | |
| Preparing transaction: ...working... done | |
| Verifying transaction: ...working... done | |
| Executing transaction: ...working... done | |
| Removing intermediate container 337eb3e78241 | |
| ---> e3ca76639e79 | |
| Step 16/34 : RUN apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* | |
| ---> Running in cb58cde57187 | |
| Removing intermediate container cb58cde57187 | |
| ---> ed443916b3f2 | |
| Step 17/34 : RUN conda clean -a -y && pip cache purge | |
| ---> Running in d5b820f8376a | |
| Will remove 76 (107.0 MB) tarball(s). | |
| Will remove 1 index cache(s). | |
| Will remove 3 (150 KB) package(s). | |
| There are no tempfile(s) to remove. | |
| There are no logfile(s) to remove. | |
| [91mWARNING: No matching packages | |
| [0mFiles removed: 0 | |
| Removing intermediate container d5b820f8376a | |
| ---> 12aadd89cccd | |
| Step 18/34 : USER $USERNAME | |
| ---> Running in a35efded265f | |
| Removing intermediate container a35efded265f | |
| ---> 613e66ba1b0e | |
| Step 19/34 : RUN sudo usermod -aG sudo $USERNAME | |
| ---> Running in 57be3acf42d0 | |
| Removing intermediate container 57be3acf42d0 | |
| ---> a05c8f135528 | |
| Step 20/34 : RUN sh -c "$(wget -O- https://github.com/deluan/zsh-in-docker/releases/download/v1.1.5/zsh-in-docker.sh)" -- -t robbyrussell | |
| ---> Running in 52789c3bc37d | |
| [91m--2024-04-10 02:08:40-- https://github.com/deluan/zsh-in-docker/releases/download/v1.1.5/zsh-in-docker.sh | |
| [0m[91mResolving github.com (github.com)... [0m[91m140.82.113.3 | |
| Connecting to github.com (github.com)|140.82.113.3|:443... [0m[91mconnected. | |
| [0m[91mHTTP request sent, awaiting response... [0m[91m302 Found | |
| Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/207162804/4f842594-dfb3-4ce4-9f53-68586ce54ac5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20240410%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240410T020840Z&X-Amz-Expires=300&X-Amz-Signature=44fcd94e777754a9b5fb325bb4e221ef7aab726af65a6c1625ffc69a29dedde3&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=207162804&response-content-disposition=attachment%3B%20filename%3Dzsh-in-docker.sh&response-content-type=application%2Foctet-stream [following] | |
| --2024-04-10 02:08:40-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/207162804/4f842594-dfb3-4ce4-9f53-68586ce54ac5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20240410%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240410T020840Z&X-Amz-Expires=300&X-Amz-Signature=44fcd94e777754a9b5fb325bb4e221ef7aab726af65a6c1625ffc69a29dedde3&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=207162804&response-content-disposition=attachment%3B%20filename%3Dzsh-in-docker.sh&response-content-type=application%2Foctet-stream | |
| Resolving objects.githubusercontent.com (objects.githubusercontent.com)... [0m[91m185.199.111.133, 185.199.108.133, 185.199.109.133, ... | |
| Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.111.133|:443... [0m[91mconnected. | |
| [0m[91mHTTP request sent, awaiting response... [0m[91m200 OK | |
| Length: 5313 (5.2K) [application/octet-stream] | |
| Saving to: 'STDOUT' | |
| 0K ..... 100% 95.4M=0s | |
| 2024-04-10 02:08:40 (95.4 MB/s) - written to stdout [5313/5313] | |
| [0m | |
| Installing Oh-My-Zsh with: | |
| THEME = robbyrussell | |
| PLUGINS = | |
| ###### Installing dependencies for ubuntu | |
| /usr/bin/sudo | |
| Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] | |
| Get:2 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB] | |
| Get:3 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 InRelease [1581 B] | |
| Get:4 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] | |
| Get:5 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB] | |
| Get:6 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64 Packages [1496 kB] | |
| Get:7 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [3483 kB] | |
| Get:8 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB] | |
| Get:9 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [29.8 kB] | |
| Get:10 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [1194 kB] | |
| Get:11 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [3546 kB] | |
| Get:12 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB] | |
| Get:13 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB] | |
| Get:14 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB] | |
| Get:15 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [4021 kB] | |
| Get:16 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1489 kB] | |
| Get:17 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [3634 kB] | |
| Get:18 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [32.5 kB] | |
| Get:19 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB] | |
| Get:20 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB] | |
| Fetched 32.4 MB in 2s (20.7 MB/s) | |
| Reading package lists... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| curl is already the newest version (7.68.0-1ubuntu2.22). | |
| git is already the newest version (1:2.25.1-1ubuntu3.11). | |
| locales is already the newest version (2.31-0ubuntu9.14). | |
| zsh is already the newest version (5.8-3ubuntu1.1). | |
| 0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded. | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| locales-all is already the newest version (2.31-0ubuntu9.14). | |
| 0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded. | |
| Generating locales (this might take a while)... | |
| en_US.UTF-8... done | |
| Generation complete. | |
| [91m % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 0 0 0 0 0 [0m[91m0 0 0 --:--:-- --:--:-- --:--:-- 0[0m[91m | |
| 100 18381 100 18381 0 0 1196k 0 --:--:-- --:--:-- --:--:-- 1196k | |
| [0mCloning Oh My Zsh... | |
| [91mFrom https://github.com/ohmyzsh/ohmyzsh | |
| * [new branch] master -> origin/master | |
| [0m[91mAlready on 'master' | |
| [0mBranch 'master' set up to track remote branch 'master' from 'origin'. | |
| /tmp | |
| Looking for an existing zsh config... | |
| Using the Oh My Zsh template file and adding it to /home/vscode/.zshrc. | |
| __ __ | |
| ____ / /_ ____ ___ __ __ ____ _____/ /_ | |
| / __ \/ __ \ / __ `__ \/ / / / /_ / / ___/ __ \ | |
| / /_/ / / / / / / / / / / /_/ / / /_(__ ) / / / | |
| \____/_/ /_/ /_/ /_/ /_/\__, / /___/____/_/ /_/ | |
| /____/ ....is now installed! | |
| Before you scream Oh My Zsh! look over the `.zshrc` file to select plugins, themes, and options. | |
| • Follow us on Twitter: https://twitter.com/ohmyzsh | |
| • Join our Discord community: https://discord.gg/ohmyzsh | |
| • Get stickers, t-shirts, coffee mugs and more: https://shop.planetargon.com/collections/oh-my-zsh | |
| Run zsh to try it out. | |
| Removing intermediate container 52789c3bc37d | |
| ---> 20f0134769c7 | |
| Step 21/34 : RUN pip install gdown==5.0.1 | |
| ---> Running in 817821907ea2 | |
| Defaulting to user installation because normal site-packages is not writeable | |
| Collecting gdown==5.0.1 | |
| Downloading gdown-5.0.1-py3-none-any.whl.metadata (5.6 kB) | |
| Collecting beautifulsoup4 (from gdown==5.0.1) | |
| Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting filelock (from gdown==5.0.1) | |
| Downloading filelock-3.13.4-py3-none-any.whl.metadata (2.8 kB) | |
| Requirement already satisfied: requests[socks] in /miniconda/lib/python3.12/site-packages (from gdown==5.0.1) (2.31.0) | |
| Requirement already satisfied: tqdm in /miniconda/lib/python3.12/site-packages (from gdown==5.0.1) (4.65.0) | |
| Collecting soupsieve>1.2 (from beautifulsoup4->gdown==5.0.1) | |
| Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB) | |
| Requirement already satisfied: charset-normalizer<4,>=2 in /miniconda/lib/python3.12/site-packages (from requests[socks]->gdown==5.0.1) (2.0.4) | |
| Requirement already satisfied: idna<4,>=2.5 in /miniconda/lib/python3.12/site-packages (from requests[socks]->gdown==5.0.1) (3.4) | |
| Requirement already satisfied: urllib3<3,>=1.21.1 in /miniconda/lib/python3.12/site-packages (from requests[socks]->gdown==5.0.1) (2.1.0) | |
| Requirement already satisfied: certifi>=2017.4.17 in /miniconda/lib/python3.12/site-packages (from requests[socks]->gdown==5.0.1) (2024.2.2) | |
| Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /miniconda/lib/python3.12/site-packages (from requests[socks]->gdown==5.0.1) (1.7.1) | |
| Downloading gdown-5.0.1-py3-none-any.whl (16 kB) | |
| Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 7.6 MB/s eta 0:00:00 | |
| Downloading filelock-3.13.4-py3-none-any.whl (11 kB) | |
| Downloading soupsieve-2.5-py3-none-any.whl (36 kB) | |
| Installing collected packages: soupsieve, filelock, beautifulsoup4, gdown | |
| [91m WARNING: The script gdown is installed in '/home/vscode/.local/bin' which is not on PATH. | |
| Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. | |
| [0mSuccessfully installed beautifulsoup4-4.12.3 filelock-3.13.4 gdown-5.0.1 soupsieve-2.5 | |
| Removing intermediate container 817821907ea2 | |
| ---> c709d7857d49 | |
| Step 22/34 : ENV PATH="/home/vscode/.local/bin:${PATH}" | |
| ---> Running in 409137aabcef | |
| Removing intermediate container 409137aabcef | |
| ---> 3f8b55fcc45e | |
| Step 23/34 : WORKDIR /home/vscode | |
| ---> Running in febe41c3a966 | |
| Removing intermediate container febe41c3a966 | |
| ---> 92a7c14d4a59 | |
| Step 24/34 : RUN gdown --fuzzy --no-cookies --no-check-certificate -O openfold.tar.gz 1PvZLs4zeh3g_JajIsbeQmhOewoI_Stll && gdown --fuzzy --no-cookies --no-check-certificate -O esm-main.tar.gz 1YE_CEOUc5FYxrEnNiQcLgttnNxUXqQj- | |
| ---> Running in 899c5f75173e | |
| [91m/miniconda/lib/python3.12/site-packages/urllib3/connectionpool.py:1099: InsecureRequestWarning: Unverified HTTPS request is being made to host 'drive.google.com'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings | |
| warnings.warn( | |
| [0m[91m/miniconda/lib/python3.12/site-packages/urllib3/connectionpool.py:1099: InsecureRequestWarning: Unverified HTTPS request is being made to host 'drive.google.com'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings | |
| warnings.warn( | |
| [0m[91m/miniconda/lib/python3.12/site-packages/urllib3/connectionpool.py:1099: InsecureRequestWarning: Unverified HTTPS request is being made to host 'doc-0c-9s-docs.googleusercontent.com'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings | |
| warnings.warn( | |
| [0m[91mDownloading... | |
| From (original): https://drive.google.com/uc?id=1PvZLs4zeh3g_JajIsbeQmhOewoI_Stll | |
| From (redirected): https://drive.google.com/uc?id=1PvZLs4zeh3g_JajIsbeQmhOewoI_Stll&confirm=t&uuid=03d5774d-8ff5-4039-a245-d868c209840f | |
| To: /home/vscode/openfold.tar.gz | |
| [0m[91m | |
| 0%| | 0.00/28.0M [00:00<?, ?B/s][0m[91m | |
| 17%|█▋ | 4.72M/28.0M [00:00<00:00, 46.1MB/s][0m[91m | |
| 80%|████████ | 22.5M/28.0M [00:00<00:00, 123MB/s] [0m[91m | |
| 100%|██████████| 28.0M/28.0M [00:00<00:00, 122MB/s] | |
| [0m[91m/miniconda/lib/python3.12/site-packages/urllib3/connectionpool.py:1099: InsecureRequestWarning: Unverified HTTPS request is being made to host 'drive.google.com'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings | |
| warnings.warn( | |
| [0m[91m/miniconda/lib/python3.12/site-packages/urllib3/connectionpool.py:1099: InsecureRequestWarning: Unverified HTTPS request is being made to host 'doc-0g-9s-docs.googleusercontent.com'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings | |
| warnings.warn( | |
| [0m[91mDownloading... | |
| From: https://drive.google.com/uc?id=1YE_CEOUc5FYxrEnNiQcLgttnNxUXqQj- | |
| To: /home/vscode/esm-main.tar.gz | |
| [0m[91m | |
| 0%| | 0.00/11.9M [00:00<?, ?B/s][0m[91m | |
| 48%|████▊ | 5.77M/11.9M [00:00<00:00, 56.7MB/s][0m[91m | |
| 100%|██████████| 11.9M/11.9M [00:00<00:00, 89.3MB/s] | |
| [0mRemoving intermediate container 899c5f75173e | |
| ---> 63353c067cda | |
| Step 25/34 : COPY create-env.sh /home/vscode/create-env.sh | |
| ---> 0cf91135e0c0 | |
| Step 26/34 : RUN tar -zxvf /home/vscode/openfold.tar.gz -C /home/vscode && rm /home/vscode/openfold.tar.gz && chown -R vscode:vscode /home/vscode/openfold && chmod -R 777 /home/vscode/openfold && cd /home/vscode/openfold && conda env create -f /home/vscode/openfold/environment.yml | |
| ---> Running in 9c37bad15153 | |
| openfold/ | |
| openfold/run_pretrained_openfold.py | |
| openfold/LICENSE | |
| openfold/.github/ | |
| openfold/.github/dependabot.yml | |
| openfold/.github/workflows/ | |
| openfold/.github/workflows/docker-image.yml | |
| openfold/.github/workflows/undefined_names.yml | |
| openfold/thread_sequence.py | |
| openfold/imgs/ | |
| openfold/imgs/of_banner.png | |
| openfold/openfold.egg-info/ | |
| openfold/openfold.egg-info/PKG-INFO | |
| openfold/openfold.egg-info/SOURCES.txt | |
| openfold/openfold.egg-info/top_level.txt | |
| openfold/openfold.egg-info/dependency_links.txt | |
| openfold/setup.py | |
| openfold/deepspeed_config.json | |
| openfold/tests/ | |
| openfold/tests/test_data_pipeline.py | |
| openfold/tests/__init__.py | |
| openfold/tests/test_data_transforms.py | |
| openfold/tests/test_model.py | |
| openfold/tests/test_kernels.py | |
| openfold/tests/test_evoformer.py | |
| openfold/tests/test_triangular_attention.py | |
| openfold/tests/compare_utils.py | |
| openfold/tests/test_data/ | |
| openfold/tests/test_data/features.pkl | |
| openfold/tests/test_data/alphafold_feature_dict.pickle | |
| openfold/tests/test_data/mmcifs/ | |
| openfold/tests/test_data/mmcifs/1hf9.cif | |
| openfold/tests/test_data/mmcifs/2q2k.cif | |
| openfold/tests/test_data/mmcifs/2crb.cif | |
| openfold/tests/test_data/mmcifs/1psm.cif | |
| openfold/tests/test_data/mmcifs/4i6p.cif | |
| openfold/tests/test_data/mmcifs/5kc1.cif | |
| openfold/tests/test_data/mmcifs/3u8v.cif | |
| openfold/tests/test_data/mmcifs/3zee.cif | |
| openfold/tests/test_data/mmcifs/4zey.cif | |
| openfold/tests/test_data/sample_feats.pickle.gz | |
| openfold/tests/test_data/alignments/ | |
| openfold/tests/test_data/alignments/pdb70_hits.hhr | |
| openfold/tests/test_data/alignments/uniref90_hits.sto | |
| openfold/tests/test_data/alignments/mgnify_hits.sto | |
| openfold/tests/test_data/alignments/bfd_uniclust_hits.a3m | |
| openfold/tests/test_data/short.fasta | |
| openfold/tests/test_feats.py | |
| openfold/tests/config.py | |
| openfold/tests/test_embedders.py | |
| openfold/tests/test_pair_transition.py | |
| openfold/tests/test_loss.py | |
| openfold/tests/test_import_weights.py | |
| openfold/tests/test_utils.py | |
| openfold/tests/data_utils.py | |
| openfold/tests/test_template.py | |
| openfold/tests/test_structure_module.py | |
| openfold/tests/test_triangular_multiplicative_update.py | |
| openfold/tests/test_outer_product_mean.py | |
| openfold/tests/test_msa.py | |
| openfold/tests/test_primitives.py | |
| openfold/README.md | |
| openfold/.gitignore | |
| openfold/scripts/ | |
| openfold/scripts/install_hh_suite.sh | |
| openfold/scripts/prep_proteinnet_msas.py | |
| openfold/scripts/download_bfd.sh | |
| openfold/scripts/run_unit_tests.sh | |
| openfold/scripts/generate_alphafold_feature_dict.py | |
| openfold/scripts/colabfold_search.sh | |
| openfold/scripts/generate_mmcif_cache.py | |
| openfold/scripts/download_openfold_params.sh | |
| openfold/scripts/download_pdb_mmcif.sh | |
| openfold/scripts/deactivate_conda_env.sh | |
| openfold/scripts/download_small_bfd.sh | |
| openfold/scripts/utils.py | |
| openfold/scripts/download_uniref90.sh | |
| openfold/scripts/unpack_proteinnet.py | |
| openfold/scripts/download_alphafold_dbs.sh | |
| openfold/scripts/precompute_alignments_mmseqs.py | |
| openfold/scripts/download_pdb70.sh | |
| openfold/scripts/download_openfold_params_huggingface.sh | |
| openfold/scripts/activate_conda_env.sh | |
| openfold/scripts/convert_of_weights_to_jax.py | |
| openfold/scripts/generate_chain_data_cache.py | |
| openfold/scripts/install_third_party_dependencies.sh | |
| openfold/scripts/download_uniref30.sh | |
| openfold/scripts/slurm_scripts/ | |
| openfold/scripts/slurm_scripts/run_uniclust30_search.sh | |
| openfold/scripts/zero_to_fp32.py | |
| openfold/scripts/download_colabfold_envdb.sh | |
| openfold/scripts/download_openfold_params_gdrive.sh | |
| openfold/scripts/flatten_roda.sh | |
| openfold/scripts/prep_mmseqs_dbs.sh | |
| openfold/scripts/build_deepspeed_config.py | |
| openfold/scripts/vars.sh | |
| openfold/scripts/download_roda_pdbs.sh | |
| openfold/scripts/download_alphafold_params.sh | |
| openfold/scripts/__pycache__/ | |
| openfold/scripts/__pycache__/utils.cpython-39.pyc | |
| openfold/scripts/precompute_embeddings.py | |
| openfold/scripts/precompute_alignments.py | |
| openfold/scripts/download_mgnify.sh | |
| openfold/scripts/download_mmseqs_dbs.sh | |
| openfold/scripts/data_dir_to_fasta.py | |
| openfold/scripts/download_cameo.py | |
| openfold/scripts/download_uniclust30.sh | |
| openfold/scripts/alignment_db_scripts/ | |
| openfold/scripts/alignment_db_scripts/unify_alignment_db_indices.py | |
| openfold/scripts/alignment_db_scripts/create_alignment_db.py | |
| openfold/.git/ | |
| openfold/.git/hooks/ | |
| openfold/.git/hooks/update.sample | |
| openfold/.git/hooks/pre-push.sample | |
| openfold/.git/hooks/pre-merge-commit.sample | |
| openfold/.git/hooks/post-update.sample | |
| openfold/.git/hooks/fsmonitor-watchman.sample | |
| openfold/.git/hooks/pre-receive.sample | |
| openfold/.git/hooks/commit-msg.sample | |
| openfold/.git/hooks/pre-applypatch.sample | |
| openfold/.git/hooks/pre-commit.sample | |
| openfold/.git/hooks/pre-rebase.sample | |
| openfold/.git/hooks/push-to-checkout.sample | |
| openfold/.git/hooks/applypatch-msg.sample | |
| openfold/.git/hooks/prepare-commit-msg.sample | |
| openfold/.git/refs/ | |
| openfold/.git/refs/remotes/ | |
| openfold/.git/refs/remotes/origin/ | |
| openfold/.git/refs/remotes/origin/HEAD | |
| openfold/.git/refs/heads/ | |
| openfold/.git/refs/heads/main | |
| openfold/.git/refs/tags/ | |
| openfold/.git/logs/ | |
| openfold/.git/logs/refs/ | |
| openfold/.git/logs/refs/remotes/ | |
| openfold/.git/logs/refs/remotes/origin/ | |
| openfold/.git/logs/refs/remotes/origin/HEAD | |
| openfold/.git/logs/refs/heads/ | |
| openfold/.git/logs/refs/heads/main | |
| openfold/.git/logs/HEAD | |
| openfold/.git/info/ | |
| openfold/.git/info/exclude | |
| openfold/.git/description | |
| openfold/.git/packed-refs | |
| openfold/.git/config | |
| openfold/.git/HEAD | |
| openfold/.git/branches/ | |
| openfold/.git/index | |
| openfold/.git/objects/ | |
| openfold/.git/objects/pack/ | |
| openfold/.git/objects/pack/pack-686362f120559ba14397d1afab39e46e2957b294.pack | |
| openfold/.git/objects/pack/pack-686362f120559ba14397d1afab39e46e2957b294.idx | |
| openfold/.git/objects/info/ | |
| openfold/CITATION.cff | |
| openfold/build/ | |
| openfold/build/temp.linux-x86_64-3.9/ | |
| openfold/build/temp.linux-x86_64-3.9/.ninja_log | |
| openfold/build/temp.linux-x86_64-3.9/build.ninja | |
| openfold/build/temp.linux-x86_64-3.9/.ninja_deps | |
| openfold/build/temp.linux-x86_64-3.9/openfold/ | |
| openfold/build/temp.linux-x86_64-3.9/openfold/utils/ | |
| openfold/build/temp.linux-x86_64-3.9/openfold/utils/kernel/ | |
| openfold/build/temp.linux-x86_64-3.9/openfold/utils/kernel/csrc/ | |
| openfold/build/temp.linux-x86_64-3.9/openfold/utils/kernel/csrc/softmax_cuda_kernel.o | |
| openfold/build/temp.linux-x86_64-3.9/openfold/utils/kernel/csrc/softmax_cuda.o | |
| openfold/build/lib.linux-x86_64-3.9/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/resources/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/resources/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/relax.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/cleanup.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/relax/amber_minimize.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/protein.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/np/residue_constants.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/config.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/logger.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/trace_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/callbacks.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/import_weights.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/validation_metrics.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/seed.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/argparse.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/lr_schedulers.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/script_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/exponential_moving_average.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/feats.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/chunk_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/tensor_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/rigid_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/loss.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/checkpointing.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/precision_utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/superimposition.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/suppress_output.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/csrc/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/csrc/softmax_cuda_kernel.cu | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/csrc/softmax_cuda.cpp | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/csrc/softmax_cuda_stub.cpp | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/csrc/compat.h | |
| openfold/build/lib.linux-x86_64-3.9/openfold/utils/kernel/attention_core.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/data_modules.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/data_transforms.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/errors.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/input_pipeline.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/data_pipeline.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/utils.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/kalign.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/hhsearch.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/hhblits.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/tools/jackhmmer.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/templates.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/feature_pipeline.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/mmcif_parsing.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/data/parsers.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/ | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/outer_product_mean.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/__init__.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/embedders.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/torchscript.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/heads.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/dropout.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/msa.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/primitives.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/pair_transition.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/evoformer.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/template.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/model.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/triangular_attention.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/structure_module.py | |
| openfold/build/lib.linux-x86_64-3.9/openfold/model/triangular_multiplicative_update.py | |
| openfold/build/lib.linux-x86_64-3.9/attn_core_inplace_cuda.cpython-39-x86_64-linux-gnu.so | |
| openfold/build/bdist.linux-x86_64/ | |
| openfold/environment.yml | |
| openfold/notebooks/ | |
| openfold/notebooks/OpenFold.ipynb | |
| openfold/notebooks/environment.yml | |
| openfold/Dockerfile | |
| openfold/openfold/ | |
| openfold/openfold/__init__.py | |
| openfold/openfold/resources/ | |
| openfold/openfold/resources/__init__.py | |
| openfold/openfold/resources/__pycache__/ | |
| openfold/openfold/resources/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/np/ | |
| openfold/openfold/np/__init__.py | |
| openfold/openfold/np/relax/ | |
| openfold/openfold/np/relax/__init__.py | |
| openfold/openfold/np/relax/utils.py | |
| openfold/openfold/np/relax/relax.py | |
| openfold/openfold/np/relax/cleanup.py | |
| openfold/openfold/np/relax/amber_minimize.py | |
| openfold/openfold/np/__pycache__/ | |
| openfold/openfold/np/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/np/protein.py | |
| openfold/openfold/np/residue_constants.py | |
| openfold/openfold/config.py | |
| openfold/openfold/utils/ | |
| openfold/openfold/utils/logger.py | |
| openfold/openfold/utils/__init__.py | |
| openfold/openfold/utils/trace_utils.py | |
| openfold/openfold/utils/callbacks.py | |
| openfold/openfold/utils/import_weights.py | |
| openfold/openfold/utils/validation_metrics.py | |
| openfold/openfold/utils/seed.py | |
| openfold/openfold/utils/argparse.py | |
| openfold/openfold/utils/lr_schedulers.py | |
| openfold/openfold/utils/script_utils.py | |
| openfold/openfold/utils/exponential_moving_average.py | |
| openfold/openfold/utils/feats.py | |
| openfold/openfold/utils/chunk_utils.py | |
| openfold/openfold/utils/__pycache__/ | |
| openfold/openfold/utils/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/utils/tensor_utils.py | |
| openfold/openfold/utils/rigid_utils.py | |
| openfold/openfold/utils/loss.py | |
| openfold/openfold/utils/checkpointing.py | |
| openfold/openfold/utils/precision_utils.py | |
| openfold/openfold/utils/superimposition.py | |
| openfold/openfold/utils/suppress_output.py | |
| openfold/openfold/utils/kernel/ | |
| openfold/openfold/utils/kernel/__init__.py | |
| openfold/openfold/utils/kernel/csrc/ | |
| openfold/openfold/utils/kernel/csrc/softmax_cuda_kernel.cu | |
| openfold/openfold/utils/kernel/csrc/softmax_cuda.cpp | |
| openfold/openfold/utils/kernel/csrc/softmax_cuda_stub.cpp | |
| openfold/openfold/utils/kernel/csrc/compat.h | |
| openfold/openfold/utils/kernel/attention_core.py | |
| openfold/openfold/data/ | |
| openfold/openfold/data/__init__.py | |
| openfold/openfold/data/data_modules.py | |
| openfold/openfold/data/data_transforms.py | |
| openfold/openfold/data/errors.py | |
| openfold/openfold/data/input_pipeline.py | |
| openfold/openfold/data/__pycache__/ | |
| openfold/openfold/data/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/data/data_pipeline.py | |
| openfold/openfold/data/tools/ | |
| openfold/openfold/data/tools/__init__.py | |
| openfold/openfold/data/tools/utils.py | |
| openfold/openfold/data/tools/kalign.py | |
| openfold/openfold/data/tools/hhsearch.py | |
| openfold/openfold/data/tools/hhblits.py | |
| openfold/openfold/data/tools/jackhmmer.py | |
| openfold/openfold/data/templates.py | |
| openfold/openfold/data/feature_pipeline.py | |
| openfold/openfold/data/mmcif_parsing.py | |
| openfold/openfold/data/parsers.py | |
| openfold/openfold/__pycache__/ | |
| openfold/openfold/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/model/ | |
| openfold/openfold/model/outer_product_mean.py | |
| openfold/openfold/model/__init__.py | |
| openfold/openfold/model/embedders.py | |
| openfold/openfold/model/torchscript.py | |
| openfold/openfold/model/heads.py | |
| openfold/openfold/model/dropout.py | |
| openfold/openfold/model/msa.py | |
| openfold/openfold/model/primitives.py | |
| openfold/openfold/model/pair_transition.py | |
| openfold/openfold/model/__pycache__/ | |
| openfold/openfold/model/__pycache__/__init__.cpython-39.pyc | |
| openfold/openfold/model/evoformer.py | |
| openfold/openfold/model/template.py | |
| openfold/openfold/model/model.py | |
| openfold/openfold/model/triangular_attention.py | |
| openfold/openfold/model/structure_module.py | |
| openfold/openfold/model/triangular_multiplicative_update.py | |
| openfold/train_openfold.py | |
| Channels: | |
| - conda-forge | |
| - bioconda | |
| - pytorch | |
| - defaults | |
| Platform: linux-64 | |
| Collecting package metadata (repodata.json): ...working... done | |
| Solving environment: ...working... done | |
| Downloading and Extracting Packages: ...working... done | |
| Preparing transaction: ...working... done | |
| Verifying transaction: ...working... done | |
| Executing transaction: ...working... By downloading and using the CUDA Toolkit conda packages, you accept the terms and conditions of the CUDA End User License Agreement (EULA): https://docs.nvidia.com/cuda/eula/index.html | |
| done | |
| Installing pip dependencies: ...working... Ran pip subprocess with arguments: | |
| ['/home/vscode/.conda/envs/openfold-venv/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/vscode/openfold/condaenv.lafe4sep.requirements.txt', '--exists-action=b'] | |
| Pip subprocess output: | |
| Collecting git+https://github.com/NVIDIA/dllogger.git (from -r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 3)) | |
| Cloning https://github.com/NVIDIA/dllogger.git to /tmp/pip-req-build-dphc0rl2 | |
| Resolved https://github.com/NVIDIA/dllogger.git to commit 0540a43971f4a8a16693a9de9de73c1072020769 | |
| Preparing metadata (setup.py): started | |
| Preparing metadata (setup.py): finished with status 'done' | |
| Collecting deepspeed==0.5.10 (from -r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) | |
| Downloading deepspeed-0.5.10.tar.gz (515 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 515.9/515.9 kB 15.7 MB/s eta 0:00:00 | |
| Preparing metadata (setup.py): started | |
| Preparing metadata (setup.py): finished with status 'done' | |
| Collecting dm-tree==0.1.6 (from -r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 2)) | |
| Downloading dm_tree-0.1.6-cp39-cp39-manylinux_2_24_x86_64.whl.metadata (1.7 kB) | |
| Collecting hjson (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) | |
| Downloading hjson-3.1.0-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting ninja (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) | |
| Downloading ninja-1.11.1.1-py2.py3-none-manylinux1_x86_64.manylinux_2_5_x86_64.whl.metadata (5.3 kB) | |
| Requirement already satisfied: numpy in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (1.21.0) | |
| Requirement already satisfied: packaging in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (24.0) | |
| Requirement already satisfied: psutil in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (5.9.8) | |
| Collecting py-cpuinfo (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) | |
| Downloading py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) | |
| Requirement already satisfied: torch in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (1.12.1) | |
| Requirement already satisfied: tqdm in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (4.62.2) | |
| Requirement already satisfied: six>=1.12.0 in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from dm-tree==0.1.6->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 2)) (1.16.0) | |
| Requirement already satisfied: typing_extensions in /home/vscode/.conda/envs/openfold-venv/lib/python3.9/site-packages (from torch->deepspeed==0.5.10->-r /home/vscode/openfold/condaenv.lafe4sep.requirements.txt (line 1)) (3.10.0.0) | |
| Downloading dm_tree-0.1.6-cp39-cp39-manylinux_2_24_x86_64.whl (94 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.7/94.7 kB 6.8 MB/s eta 0:00:00 | |
| Downloading hjson-3.1.0-py3-none-any.whl (54 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 4.0 MB/s eta 0:00:00 | |
| Downloading ninja-1.11.1.1-py2.py3-none-manylinux1_x86_64.manylinux_2_5_x86_64.whl (307 kB) | |
| ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 307.2/307.2 kB 21.9 MB/s eta 0:00:00 | |
| Downloading py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) | |
| Building wheels for collected packages: deepspeed, DLLogger | |
| Building wheel for deepspeed (setup.py): started | |
| Building wheel for deepspeed (setup.py): finished with status 'done' | |
| Created wheel for deepspeed: filename=deepspeed-0.5.10-py3-none-any.whl size=528290 sha256=23f607b23b8c689f09cc17fb3cb0d8878fecd6fe63876d4aef5d10d7000bf34c | |
| Stored in directory: /home/vscode/.cache/pip/wheels/16/aa/5e/fa73b5f3c4609de352ce60e78c697947b05270bb71949eb914 | |
| Building wheel for DLLogger (setup.py): started | |
| Building wheel for DLLogger (setup.py): finished with status 'done' | |
| Created wheel for DLLogger: filename=DLLogger-1.0.0-py3-none-any.whl size=5670 sha256=71d3937eb8e0520703fd7f0cfc0fb0b88ce9398f8afde7a5a72646136ef3e49a | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-kky01_6x/wheels/a9/cb/b1/55d244a0b4758c38675f84d95864e029e166a930095bb9b82b | |
| Successfully built deepspeed DLLogger | |
| Installing collected packages: py-cpuinfo, ninja, hjson, dm-tree, DLLogger, deepspeed | |
| Successfully installed DLLogger-1.0.0 deepspeed-0.5.10 dm-tree-0.1.6 hjson-3.1.0 ninja-1.11.1.1 py-cpuinfo-9.0.0 | |
| done | |
| # | |
| # To activate this environment, use | |
| # | |
| # $ conda activate openfold-venv | |
| # | |
| # To deactivate an active environment, use | |
| # | |
| # $ conda deactivate | |
| Removing intermediate container 9c37bad15153 | |
| ---> 99c1c73d9486 | |
| Step 27/34 : RUN zsh /home/vscode/create-env.sh | |
| ---> Running in 2f93c6fad992 | |
| [91mzsh: can't open input file: /home/vscode/create-env.sh | |
| [0mThe command '/bin/sh -c zsh /home/vscode/create-env.sh' returned a non-zero code: 127 |
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