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sbassi/gist:a662e2b1ded0d1f452bf8b99545244d2

Created May 18, 2020 03:43
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gistfile1.txt
import numpy as np
from pandas import read_csv
import holoviews as hv
from holoviews import opts
hv.extension('bokeh')
DATA_FILE = 'samples/GSM188012.CEL'
dtype = {'x': int, 'y': int, 'lux': float}
ds = read_csv(DATA_FILE, sep='\t', dtype=dtype)
heatmap = hv.HeatMap(ds).aggregate(function=np.mean)
heatmap.opts(opts.HeatMap(tools=['hover'], colorbar=True, width=1200, height=1200, toolbar='above'))
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