Skip to content

Instantly share code, notes, and snippets.

@sbesson
Last active July 13, 2020 12:49
Show Gist options
  • Save sbesson/81814ab64e3f620b95fe941130dd3ebc to your computer and use it in GitHub Desktop.
Save sbesson/81814ab64e3f620b95fe941130dd3ebc to your computer and use it in GitHub Desktop.
Companion sparse HCS OME-TIFF fileset
<?xml version="1.0" encoding="UTF-8"?>
<OME xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2016-06
http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd">
<Plate
ID="Plate:0"
Name="Control Plate"
ColumnNamingConvention="letter"
RowNamingConvention="number"
Columns="2"
Rows="2"
>
<Well ID="Well:0:0" Column="0" Row="0">
<WellSample ID="WellSample:0:0:0" Index="0">
<ImageRef ID="Image:0"/>
</WellSample>
<WellSample ID="WellSample:0:0:1" Index="1">
<ImageRef ID="Image:1"/>
</WellSample>
</Well>
<Well ID="Well:0:1" Column="1" Row="0">
<WellSample ID="WellSample:0:1:1" Index="3">
<ImageRef ID="Image:3"/>
</WellSample>
</Well>
<Well ID="Well:0:2" Column="0" Row="1">
<WellSample ID="WellSample:0:2:0" Index="4">
<ImageRef ID="Image:4"/>
</WellSample>
<WellSample ID="WellSample:0:2:1" Index="5">
<ImageRef ID="Image:5"/>
</WellSample>
</Well>
</Plate>
<Image ID="Image:0" Name="test">
<Pixels DimensionOrder="XYCZT" ID="Pixels:0:0"
SizeC="1" SizeT="1" SizeX="512" SizeY="512" SizeZ="1"
Type="uint8">
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="1">
<UUID FileName="test.tiff">urn:uuid:1004ce55-deab-4fc7-b186-1cbd39686dd7</UUID>
</TiffData>
</Pixels>
</Image>
<Image ID="Image:1" Name="test">
<Pixels DimensionOrder="XYCZT" ID="Pixels:1:0"
SizeC="1" SizeT="1" SizeX="512" SizeY="512" SizeZ="1"
Type="uint8">
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="1">
<UUID FileName="test.tiff">urn:uuid:1004ce55-deab-4fc7-b186-1cbd39686dd7</UUID>
</TiffData>
</Pixels>
</Image>
<Image ID="Image:3" Name="test">
<Pixels DimensionOrder="XYCZT" ID="Pixels:3:0"
SizeC="1" SizeT="1" SizeX="512" SizeY="512" SizeZ="1"
Type="uint8">
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="1">
<UUID FileName="test.tiff">urn:uuid:1004ce55-deab-4fc7-b186-1cbd39686dd7</UUID>
</TiffData>
</Pixels>
</Image>
<Image ID="Image:4" Name="test">
<Pixels DimensionOrder="XYCZT" ID="Pixels:4:0"
SizeC="1" SizeT="1" SizeX="512" SizeY="512" SizeZ="1"
Type="uint8">
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="1">
<UUID FileName="test.tiff">urn:uuid:1004ce55-deab-4fc7-b186-1cbd39686dd7</UUID>
</TiffData>
</Pixels>
</Image>
<Image ID="Image:5" Name="test">
<Pixels DimensionOrder="XYCZT" ID="Pixels:5:0"
SizeC="1" SizeT="1" SizeX="512" SizeY="512" SizeZ="1"
Type="uint8">
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="1">
<UUID FileName="test.tiff">urn:uuid:1004ce55-deab-4fc7-b186-1cbd39686dd7</UUID>
</TiffData>
</Pixels>
</Image>
</OME>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment