Skip to content

Instantly share code, notes, and snippets.

@sbonner0
Last active July 7, 2016 11:11
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
Star You must be signed in to star a gist
Embed
What would you like to do?
yum install cairomm cairomm-devel pycairo pycairo-devel sparsehash sparsehash-devel python-pip -y
wget https://sourceforge.net/projects/boost/files/boost/1.56.0/boost_1_56_0.tar.gz
tar xf boost_1_56_0.tar.gz
cd boost_1_56_0
./bootstrap.sh
./b2 install --prefix=/usr/local/apps/boost-1.56.0
export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/usr/local/apps/boost-1.56.0/include/
export C_INCLUDE_PATH=$C_INCLUDE_PATH:/usr/local/apps/boost-1.56.0/include/
export LD_LIBRARY_PATH=/usr/local/apps/boost-1.56.0/lib/:$LD_LIBRARY_PATH
cd
wget https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-4.7/CGAL-4.7.tar.gz
tar zxf CGAL-4.7.tar.gz
cd CGAL-4.7
mkdir /usr/local/apps/cgal-4.8
cmake -DBoost_INCLUDE_DIR=/usr/local/apps/boost-1.56.0/include/ -DCMAKE_INSTALL_PREFIX=/usr/local/apps/cgal-4.8/ .
make
ln -s /usr/local/apps/cgal/lib/libCGAL.so /usr/local/lib64/
cd
mkdir -p /usr/local/apps/openblas
git clone https://github.com/xianyi/OpenBLAS
cd OpenBLAS
make FC=gfortran
make PREFIX=/usr/local/apps/openblas/ install
export LD_LIBRARY_PATH=/usr/local/apps/openblas/lib:$LD_LIBRARY_PATH
cd
git clone https://github.com/numpy/numpy
cd numpy
echo "[default]
include_dirs = /usr/local/apps/openblas/include
library_dirs = /usr/local/apps/openblas/lib
[openblas]
openblas_libs = openblas
library_dirs = /usr/local/apps/openblas/lib
[lapack]
lapack_libs = openblas
library_dirs = /usr/local/apps/openblas/lib" >> site.cfg
python setup.py build --fcompiler=gnu95
python setup.py
cd
pip install scipy matplotlib
wget https://downloads.skewed.de/graph-tool/graph-tool-2.8.tar.bz2
tar xf graph-tool-2.10.tar.bz2
cd graph-tool-2.10
CPPFLAGS='-I/usr/local/apps/cgal-4.7/include/ -I/usr/include/google/ -I/usr/local/apps/boost-1.56.0/include/' LDFLAGS="-L/usr/local/apps/boost-1.60.0/lib/" ./configure --enable-openmp --with-sparsehash-prefix=google
make -j 4
make install
@sbonner0
Copy link
Author

sbonner0 commented Apr 5, 2016

Here is a simple script to install Graph-tool 2.8 on CentOS 7....This version of Graph-tool works with the version of gcc in the Red Hat repos so is somewhat simpler then building everything from source.
In addition Boost 1.56, OpenBLAS and Numpy are installed.

@count0
Copy link

count0 commented Jul 5, 2016

Version 2.8 is very outdated. Many things have changed and have been fixed since then. Using this version is not recommended.

@sbonner0
Copy link
Author

sbonner0 commented Jul 6, 2016

Hi count0, many thanks for your response! Yes i agree that 2.8 is vastly out of date but it appears to be the last version which can be complied using the system GCC and python on CentOS 7.

@yz2235
Copy link

yz2235 commented Jul 6, 2016

Hi sbonner0, thanks for sharing this script. We're a group of Economist stuck with CentOS 7 for privacy law reasons, and would like to use graph-tool. What are the notable differences between 2.8 and 2.16? Is there any serious limitation with 2.8 you've encountered so far? Thanks a lot!

@sbonner0
Copy link
Author

sbonner0 commented Jul 7, 2016

I've personally not experienced any major differences between 2.8 and 2.16 although the change log would give a better guide to what you will be missing out on.

I personally use 2.16 on my dev workstation with Fedora 23 and am stuck with 2.8 on the university compute resources due to CentOS 7. My code works fine across both resources, although you might have a different experience depending upon what features of graph tool you would like to use.

I hope that helps somewhat!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment