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January 27, 2024 10:19
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(partial) EasyBuild log for failed build of /tmp/eb-lakvubsm/files_pr16355/a/ASAP3/ASAP3-3.12.12-foss-2022a.eb (PR(s) #16355)
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== 2024-01-27 11:19:52,665 easyblock.py:313 INFO This is EasyBuild 4.9.0 (framework: 4.9.0, easyblocks: 4.9.0) on host slid.fysik.dtu.dk. | |
== 2024-01-27 11:19:52,665 easyblock.py:319 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/home/modules/software/EasyBuild/4.9.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/pythonpackage.py) | |
== 2024-01-27 11:19:52,665 easyblock.py:1056 INFO Build dir set to /scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a | |
== 2024-01-27 11:19:52,666 easyblock.py:1113 INFO Software install dir set to /home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a | |
== 2024-01-27 11:19:52,666 easyblock.py:1118 INFO Module install dir set to /home/niflheim/schiotz/easybuild_2022a/broadwell/modules/all | |
== 2024-01-27 11:19:52,666 easyblock.py:288 INFO Init completed for application name ASAP3 version 3.12.12 | |
== 2024-01-27 11:19:52,667 pythonpackage.py:406 INFO Using default value for expected module name (lowercase software name): 'asap3' | |
== 2024-01-27 11:19:52,667 pythonpackage.py:438 INFO Using pip with --no-deps option | |
== 2024-01-27 11:19:52,667 environment.py:93 INFO Environment variable XDG_CACHE_HOME set to /tmp/eb-lakvubsm (previously undefined) | |
== 2024-01-27 11:19:52,667 pythonpackage.py:455 INFO Using /tmp/eb-lakvubsm as pip cache directory | |
== 2024-01-27 11:19:52,668 pythonpackage.py:470 INFO Using '%(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s' as install command | |
== 2024-01-27 11:19:52,668 easyblock.py:4226 INFO Obtained application instance of for ASAP3 (easyblock: PythonPackage) | |
== 2024-01-27 11:19:52,668 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,669 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,669 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,669 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', github_account='asap3', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,671 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2024-01-27 11:19:52,671 one.py:180 INFO Skipping reformatting value for parameter 'toolchainopts' | |
== 2024-01-27 11:19:52,672 filetools.py:1911 INFO Creating directory /tmp/eb-lakvubsm/reprod_20240127111952_46773 (parents: True, set_gid: False, sticky: False) | |
== 2024-01-27 11:19:52,673 easyblock.py:4480 INFO Dumped easyconfig instance to /tmp/eb-lakvubsm/reprod_20240127111952_46773/ASAP3-3.12.12-foss-2022a.eb | |
== 2024-01-27 11:19:52,673 filetools.py:1911 INFO Creating directory /tmp/eb-lakvubsm/reprod_20240127111952_46773/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2024-01-27 11:19:52,675 filetools.py:2424 INFO /home/modules/software/EasyBuild/4.9.0/lib/python3.6/site-packages/easybuild/easyblocks/generic/pythonpackage.py copied to /tmp/eb-lakvubsm/reprod_20240127111952_46773/easyblocks/pythonpackage.py | |
== 2024-01-27 11:19:52,675 easyblock.py:4460 INFO Dumped easyblock pythonpackage.py required for reproduction to /tmp/eb-lakvubsm/reprod_20240127111952_46773/easyblocks | |
== 2024-01-27 11:19:52,676 easyblock.py:2231 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2024-01-27 11:19:52,676 build_log.py:267 INFO building and installing ASAP3/3.12.12-foss-2022a... | |
== 2024-01-27 11:19:52,677 filetools.py:2004 INFO Lock /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock does not exist | |
== 2024-01-27 11:19:52,677 filetools.py:1945 INFO Creating lock at /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock... | |
== 2024-01-27 11:19:52,677 filetools.py:1911 INFO Creating directory /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock (parents: True, set_gid: False, sticky: False) | |
== 2024-01-27 11:19:52,678 filetools.py:1954 INFO Lock created: /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock | |
== 2024-01-27 11:19:52,678 build_log.py:267 INFO fetching files... | |
== 2024-01-27 11:19:52,679 easyblock.py:3948 INFO Starting fetch step | |
== 2024-01-27 11:19:52,679 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,679 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,679 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,680 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,680 easyblock.py:3956 INFO Running method fetch_step part of step fetch | |
== 2024-01-27 11:19:52,680 easyblock.py:2353 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2024-01-27 11:19:52,680 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for asap3-3.12.12.tar.gz: /tmp/eb-lakvubsm/files_pr16355/a/ASAP3 | |
== 2024-01-27 11:19:52,681 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/modules/software/EasyBuild/4.9.0/bin/eb | |
== 2024-01-27 11:19:52,681 tools.py:287 INFO Also considering installation prefix /home/modules/software/EasyBuild/4.9.0 (determined via path to 'eb' script)... | |
== 2024-01-27 11:19:52,682 easyblock.py:851 INFO Found file asap3-3.12.12.tar.gz at /home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz | |
== 2024-01-27 11:19:52,682 easyblock.py:496 INFO Added sources: [{'name': 'asap3-3.12.12.tar.gz', 'path': '/home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz', 'cmd': None, 'checksum': '6ba11e7e9623a7538419f4f7c9704ab87232381da7b8e07702fbf383fd6cf92f', 'finalpath': '/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a'}] | |
== 2024-01-27 11:19:52,682 easyblock.py:2396 INFO no patches provided | |
== 2024-01-27 11:19:52,687 easyblock.py:2406 INFO md5 checksum for /home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz: 41a413f5f68f73ae71fe8d4191237260 | |
== 2024-01-27 11:19:52,693 easyblock.py:2406 INFO sha256 checksum for /home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz: 6ba11e7e9623a7538419f4f7c9704ab87232381da7b8e07702fbf383fd6cf92f | |
== 2024-01-27 11:19:52,694 easyblock.py:2441 INFO Checking dirs that need to be created: ['/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', '/home/niflheim/schiotz/easybuild_2022a/broadwell/modules/all/ASAP3', '/home/niflheim/schiotz/easybuild_2022a/broadwell/modules/phys/ASAP3'] | |
== 2024-01-27 11:19:52,694 filetools.py:1911 INFO Creating directory /home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a (parents: True, set_gid: False, sticky: False) | |
== 2024-01-27 11:19:52,695 build_log.py:267 INFO creating build dir, resetting environment... | |
== 2024-01-27 11:19:52,695 easyblock.py:3948 INFO Starting ready step | |
== 2024-01-27 11:19:52,696 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,696 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,696 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,697 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,697 easyblock.py:3956 INFO Running method check_readiness_step part of step ready | |
== 2024-01-27 11:19:52,697 easyblock.py:2250 INFO Setting parallelism: 48 | |
== 2024-01-27 11:19:52,771 easyblock.py:2302 WARNING Loaded modules detected: ['EasyBuild/4.9.0'] | |
== 2024-01-27 11:19:52,772 easyblock.py:3956 INFO Running method make_builddir part of step ready | |
== 2024-01-27 11:19:52,772 filetools.py:1911 INFO Creating directory /scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a (parents: True, set_gid: False, sticky: False) | |
== 2024-01-27 11:19:52,773 easyblock.py:3956 INFO Running method reset_env part of step ready | |
== 2024-01-27 11:19:52,773 easyblock.py:3956 INFO Running method handle_iterate_opts part of step ready | |
== 2024-01-27 11:19:52,773 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,774 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,774 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,774 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,775 build_log.py:267 INFO unpacking... | |
== 2024-01-27 11:19:52,775 easyblock.py:3948 INFO Starting source step | |
== 2024-01-27 11:19:52,775 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,775 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,775 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,776 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,776 easyblock.py:3956 INFO Running method checksum_step part of step source | |
== 2024-01-27 11:19:52,780 easyblock.py:2459 INFO Checksum verification for /home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz using 6ba11e7e9623a7538419f4f7c9704ab87232381da7b8e07702fbf383fd6cf92f passed. | |
== 2024-01-27 11:19:52,780 easyblock.py:3956 INFO Running method extract_step part of step source | |
== 2024-01-27 11:19:52,780 easyblock.py:2571 INFO Unpacking source asap3-3.12.12.tar.gz | |
== 2024-01-27 11:19:52,781 run.py:247 INFO running cmd: tar xzf /home/niflheim/schiotz/easybuild_2022a/broadwell/sources/a/ASAP3/asap3-3.12.12.tar.gz | |
== 2024-01-27 11:19:52,852 build_log.py:267 INFO patching... | |
== 2024-01-27 11:19:52,853 easyblock.py:3948 INFO Starting patch step | |
== 2024-01-27 11:19:52,853 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,854 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,854 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,855 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,855 easyblock.py:3956 INFO Running method patch_step part of step patch | |
== 2024-01-27 11:19:52,855 build_log.py:267 INFO preparing... | |
== 2024-01-27 11:19:52,855 easyblock.py:3948 INFO Starting prepare step | |
== 2024-01-27 11:19:52,856 easyconfig.py:1702 INFO Generating template values... | |
== 2024-01-27 11:19:52,856 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-01-27 11:19:52,856 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-01-27 11:19:52,857 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='asap3', builddir='/scratch/schiotz/eb_build/ASAP3/3.12.12/foss-2022a', github_account='asap3', installdir='/home/niflheim/schiotz/easybuild_2022a/broadwell/software/ASAP3/3.12.12-foss-2022a', module_name='ASAP3/3.12.12-foss-2022a', mpi_cmd_prefix='mpirun -n 1', name='ASAP3', nameletter='A', nameletterlower='a', namelower='asap3', parallel='48', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2022a', version='3.12.12', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='' | |
== 2024-01-27 11:19:52,857 easyblock.py:3956 INFO Running method prepare_step part of step prepare | |
== 2024-01-27 11:19:52,859 modules.py:626 INFO Checking whether pkgconfig/1.5.5-GCCcore-11.3.0-python exists... | |
== 2024-01-27 11:19:52,859 modules.py:631 INFO Module pkgconfig/1.5.5-GCCcore-11.3.0-python exists (found in list of available modules) | |
== 2024-01-27 11:19:52,859 modules.py:654 INFO Result for existence check of pkgconfig/1.5.5-GCCcore-11.3.0-python module: True | |
== 2024-01-27 11:19:52,860 modules.py:626 INFO Checking whether Python/3.10.4-GCCcore-11.3.0 exists... | |
== 2024-01-27 11:19:52,860 modules.py:631 INFO Module Python/3.10.4-GCCcore-11.3.0 exists (found in list of available modules) | |
== 2024-01-27 11:19:52,860 modules.py:654 INFO Result for existence check of Python/3.10.4-GCCcore-11.3.0 module: True | |
== 2024-01-27 11:19:52,860 modules.py:626 INFO Checking whether ASE/3.22.1-foss-2022a exists... | |
== 2024-01-27 11:19:52,860 modules.py:631 INFO Module ASE/3.22.1-foss-2022a exists (found in list of available modules) | |
== 2024-01-27 11:19:52,860 modules.py:654 INFO Result for existence check of ASE/3.22.1-foss-2022a module: True | |
== 2024-01-27 11:19:52,861 modules.py:626 INFO Checking whether kim-api/2.3.0-GCC-11.3.0 exists... | |
== 2024-01-27 11:19:52,861 modules.py:634 INFO Module kim-api/2.3.0-GCC-11.3.0 not found in list of available modules, checking via 'module show'... | |
== 2024-01-27 11:19:53,144 modules.py:647 INFO Module kim-api/2.3.0-GCC-11.3.0 not found via module avail/show, checking whether it is a wrapper | |
== 2024-01-27 11:19:53,146 modules.py:654 INFO Result for existence check of kim-api/2.3.0-GCC-11.3.0 module: False | |
== 2024-01-27 11:19:53,154 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): kim-api/2.3.0-GCC-11.3.0 (at easybuild/tools/toolchain/toolchain.py:559 in _check_dependencies) | |
== 2024-01-27 11:19:53,157 filetools.py:2012 INFO Removing lock /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock... | |
== 2024-01-27 11:19:53,159 filetools.py:383 INFO Path /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock successfully removed. | |
== 2024-01-27 11:19:53,159 filetools.py:2016 INFO Lock removed: /home/niflheim/schiotz/easybuild_2022a/broadwell/software/.locks/_home_niflheim_schiotz_easybuild_2022a_broadwell_software_ASAP3_3.12.12-foss-2022a.lock | |
== 2024-01-27 11:19:53,159 easyblock.py:4283 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): kim-api/2.3.0-GCC-11.3.0 | |
== 2024-01-27 11:19:53,159 easyblock.py:328 INFO Closing log for application name ASAP3 version 3.12.12 |
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