spocc_via_ids.md

taxize integration: Pass in taxonomic identifiers

library(taxize)
library(spocc)

Via get_ids

ids <- get_ids(names="Chironomus riparius", db = 'gbif')
occ(ids = ids, from='gbif')

Summary of results - occurrences found for: 
 gbif  : 25 records across 1 species 
 bison :  0 records across 1 species 
 inat  :  0 records across 1 species 
 ebird :  0 records across 1 species 
 ecoengine :  0 records across 1 species 

Via get_gbifid

ids <- get_gbifid("Chironomus riparius")
occ(ids = ids, from='gbif')

Summary of results - occurrences found for: 
 gbif  : 25 records across 1 species 
 bison :  0 records across 1 species 
 inat  :  0 records across 1 species 
 ebird :  0 records across 1 species 
 ecoengine :  0 records across 1 species 

Via get_tsn

ids <- get_tsn('Accipiter striatus')
occ(ids = ids, from='bison')

Summary of results - occurrences found for: 
 gbif  : 0 records across 1 species 
 bison :  22 records across 1 species 
 inat  :  0 records across 1 species 
 ebird :  0 records across 1 species 
 ecoengine :  0 records across 1 species 

Multiple names via get_ids

ids <- get_ids(names=c("Chironomus riparius","Pinus contorta"), db = c('itis','gbif'))
occ(ids = ids[[1]], from='bison')
occ(ids = ids, from=c('bison','gbif'))

Summary of results - occurrences found for: 
 gbif  : 50 records across 4 species 
 bison :  12 records across 4 species 
 inat  :  0 records across 4 species 
 ebird :  0 records across 4 species 
 ecoengine :  0 records across 4 species 

Summary of results - occurrences found for: 
 gbif  : 0 records across 2 species 
 bison :  12 records across 2 species 
 inat  :  0 records across 2 species 
 ebird :  0 records across 2 species 
 ecoengine :  0 records across 2 species