Created
October 24, 2011 13:58
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broken sam semantic track
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[main:database] | |
db_adaptor = Bio::DB::SeqFeature::Store | |
db_args = -adaptor memory | |
-dir '/Library/WebServer/Documents/gbrowse2/databases/volvox' | |
[samdb:database] | |
db_adaptor = Bio::DB::Sam | |
db_args = -fasta /Library/WebServer/Documents/gbrowse2/databases/volvox/volvox.fa | |
-bam /Library/WebServer/Documents/gbrowse2/databases/volvox/volvox.sort.bam | |
search options = none | |
[TRACK DEFAULTS] | |
glyph = generic | |
height = 10 | |
bgcolor = lightgrey | |
fgcolor = black | |
font2color = blue | |
label density = 25 | |
bump density = 100 | |
database = main | |
# where to link to when user clicks in detailed view | |
link = AUTO | |
[Alignments] | |
feature = match | |
glyph = segments | |
key = Example alignments | |
[Alignments:10000] | |
glyph = box | |
label = 0 | |
[Alignments:45000] | |
glyph = box | |
bump = 0 | |
label = 0 | |
[Reads] | |
feature = match | |
glyph = segments | |
draw_target = 1 | |
show_mismatch = 1 | |
mismatch_color = red | |
database = samdb | |
bgcolor = blue | |
height = 5 | |
label density = 50 | |
bump = fast | |
key = Reads | |
category = Reads | |
[Reads:5000] | |
feature = coverage | |
glyph = wiggle_density | |
database = samdb | |
height = 20 | |
bicolor_pivot = 90 | |
pos_color = blue | |
neg_color = red | |
label = 0 | |
draw_target = 0 | |
show_mismatch = 0 | |
bump = 0 | |
[CoverageDensity] | |
feature = coverage | |
glyph = wiggle_density | |
database = samdb | |
height = 20 | |
bicolor_pivot = 90 | |
pos_color = blue | |
neg_color = red | |
key = Coverage (density) | |
category = Reads | |
label = 0 | |
[Pairs] | |
feature = read_pair | |
glyph = segments | |
draw_target = 1 | |
show_mismatch = 1 | |
mismatch_color = red | |
database = samdb | |
bgcolor = violet | |
height = 5 | |
label density = 50 | |
bump = fast | |
key = Read pairs | |
category = Reads | |
[Pairs:2000] | |
feature = coverage | |
glyph = wiggle_density | |
database = samdb | |
height = 20 | |
bicolor_pivot = 90 | |
pos_color = purple | |
neg_color = red | |
label = 0 | |
draw_target = 0 | |
show_mismatch = 0 | |
bump = 0 |
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