Created
December 12, 2023 23:28
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sample of protein coordinate GFF for C. elegans
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| ### | |
| Y34D9B.1b WormBase polypeptide 1 529 . . . ID=Y34D9B.1b;uniprot_id=Q9N532;wormbase_geneid=WBGene00003238;wormbase_genename=mig-1;wormbase_protein=CE24204 | |
| Y34D9B.1b WormBase CDS 1 529 . . . ID=Y34D9B.1b_exon_boundaries;uniprot_id=Q9N532;wormbase_geneid=WBGene00003238;wormbase_genename=mig-1;wormbase_protein=CE24204 | |
| Y34D9B.1b WormBase exon 1 43 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 43 90 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 91 161 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 162 208 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 209 239 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 239 279 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 280 338 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 339 490 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b WormBase exon 490 530 . . . Parent=Y34D9B.1b_exon_boundaries | |
| Y34D9B.1b SignalP signal_peptide 1 23 . . . Name=SignalP | |
| Y34D9B.1b TMHMM transmembrane_helix 4 21 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 217 239 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 254 276 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 345 367 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 394 413 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 420 442 . . . Name=TMHMM | |
| Y34D9B.1b TMHMM transmembrane_helix 462 484 . . . Name=TMHMM | |
| Y34D9B.1b PANTHER motif 24 406 207.4 . . Name=PANTHER PTHR11309 (FRIZZLED);wormbase_motif=HMMPANTHER:PTHR11309 | |
| Y34D9B.1b Pfam motif 26 131 103.9 . . Name=Pfam PF01392 (Fz);wormbase_motif=PFAM:PF01392 | |
| Y34D9B.1b Pfam motif 252 411 57.4 . . Name=Pfam PF01534 (Frizzled);wormbase_motif=PFAM:PF01534 | |
| Y34D9B.1b SMART motif 25 144 230 . . Name=SMART SM00063 (FRI_4);wormbase_motif=SMART:SM00063 | |
| Y34D9B.1b SMART motif 207 489 -135.4 . . Name=SMART SM01330 (Frizzled_2);wormbase_motif=SMART:SM01330 | |
| Y34D9B.1b SUPERFAMILY motif 24 142 . . . Name=SUPERFAMILY SSF63501 (Frizzled cysteine-rich domain);wormbase_motif=SUPERFAMILY:SSF63501 | |
| ### |
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