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@scottcain
Created July 1, 2021 20:03
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{
"label" : "SpCas9 NGG PAM sites",
"unsafeMouseover" : true,
"unsafePopup" : true,
"type":"CanvasFeatures",
"category" : "CRISPR_Cas9 sgRNA predictions",
"key" : "SpCas9 NGG PAM sites",
"style" : {
"color" : "RebeccaPurple",
"height" : 5
},
"metadata" : {
"shortInfo" : "Streptococcus pyogenes Cas9 PAM sites based on NGG motif. Computed on the fly at load time."
},
"storeClass" : "RegexSequenceSearch/Store/SeqFeature/RegexSearch",
"searchParams" :{"expr":".GG","regex":true,"caseIgnore":true,"fwdStrand":true,"revStrand":true}
},
{
"label" : "SaCas9 NNGRRT PAM sites",
"unsafeMouseover" : true,
"unsafePopup" : true,
"type":"CanvasFeatures",
"category" : "CRISPR_Cas9 sgRNA predictions",
"key" : "SaCas9 NNGRRT PAM sites",
"style" : {
"color" : "DarkViolet",
"height" : 5
},
"metadata" : {
"shortInfo" : "Staphylococcus aureus Cas9 PAM sites based on NNGRRT motif. Computed on the fly at load time."
},
"storeClass" : "RegexSequenceSearch/Store/SeqFeature/RegexSearch",
"searchParams" :{"expr":"..G[AG][AG]T","regex":true,"caseIgnore":true,"fwdStrand":true,"revStrand":true}
},
{
"label" : "Cas12a TTN PAM sites",
"unsafeMouseover" : true,
"unsafePopup" : true,
"type":"CanvasFeatures",
"category" : "CRISPR_Cas9 sgRNA predictions",
"key" : "Cas12a TTN PAM sites",
"style" : {
"color" : "Indigo",
"height" : 5
},
"metadata" : {
"shortInfo" : "Cas12a (Cpf1) PAM sites based on TTN motif. Computed on the fly at load time."
},
"storeClass" : "RegexSequenceSearch/Store/SeqFeature/RegexSearch",
"searchParams" :{"expr":"TT.","regex":true,"caseIgnore":true,"fwdStrand":true,"revStrand":true}
},
{
"label" : "Cas12e TTCN PAM sites",
"unsafeMouseover" : true,
"unsafePopup" : true,
"type":"CanvasFeatures",
"category" : "CRISPR_Cas9 sgRNA predictions",
"key" : "Cas12e TTCN PAM sites",
"style" : {
"color" : "SlateBlue",
"height" : 5
},
"metadata" : {
"shortInfo" : "Cas12e (CasX) PAM sites based on TTCN motif. Computed on the fly at load time."
},
"storeClass" : "RegexSequenceSearch/Store/SeqFeature/RegexSearch",
"searchParams" :{"expr":"TTC.","regex":true,"caseIgnore":true,"fwdStrand":true,"revStrand":true}
},
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