Created
May 25, 2016 15:50
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| [info] Loading global plugins from /Users/sfrazer/.sbt/0.13/plugins | |
| [info] Loading project definition from /Users/sfrazer/projects/cromwell/project | |
| SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". | |
| SLF4J: Defaulting to no-operation (NOP) logger implementation | |
| SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. | |
| [info] Set current project to cromwell (in build file:/Users/sfrazer/projects/cromwell/) | |
| [info] Compiling 2 Scala sources to /Users/sfrazer/projects/cromwell/engine/target/scala-2.11/classes... | |
| [info] Running cromwell.Main run scatter.wdl - | |
| [2016-05-25 11:47:02,566] [info] Slf4jLogger started | |
| [2016-05-25 11:47:02,604] [info] RUN sub-command | |
| [2016-05-25 11:47:02,604] [info] WDL file: scatter.wdl | |
| [2016-05-25 11:47:02,665] [info] SingleWorkflowRunnerActor: launching workflow | |
| [2016-05-25 11:47:03,183] [info] Running with database db.url = jdbc:mysql://localhost/cromwell | |
| [2016-05-25 11:47:05,37] [info] WorkflowManagerActor submitWorkflow input id = None, effective id = ffad895f-b7a4-438b-9cb0-8831a3c9f92e | |
| [2016-05-25 11:47:05,44] [info] Slf4jLogger started | |
| [2016-05-25 11:47:05,81] [info] WorkflowManagerActor Found no workflows to restart. | |
| [2016-05-25 11:47:05,119] [info] SingleWorkflowRunnerActor: workflow ID ffad895f-b7a4-438b-9cb0-8831a3c9f92e | |
| [2016-05-25 11:47:05,121] [info] Successfuly started akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e for Workflow ffad895f-b7a4-438b-9cb0-8831a3c9f92e | |
| [2016-05-25 11:47:05,121] [info] SingleWorkflowRunnerActor: workflow ID ffad895f-b7a4-438b-9cb0-8831a3c9f92e | |
| [2016-05-25 11:47:05,128] [info] WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e transitioning from WorkflowUnstartedState to MaterializingWorkflowDescriptorState | |
| [2016-05-25 11:47:05,132] [warn] WorkflowManagerActor: Unhandled message: ServiceRegistryFailure(MetadataService) | |
| [2016-05-25 11:47:05,133] [warn] WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e received an unhandled message Event(ServiceRegistryFailure(MetadataService),WorkflowActorData(Some(Actor[akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/$a#1540624898]),None)) in state MaterializingWorkflowDescriptorState | |
| [2016-05-25 11:47:05,133] [warn] WorkflowManagerActor: Unhandled message: ServiceRegistryFailure(MetadataService) | |
| [2016-05-25 11:47:05,133] [warn] WorkflowManagerActor: Unhandled message: ServiceRegistryFailure(MetadataService) | |
| [2016-05-25 11:47:05,133] [warn] WorkflowManagerActor: Unhandled message: SubscribeToWorkflow(ffad895f-b7a4-438b-9cb0-8831a3c9f92e) | |
| [2016-05-25 11:47:05,134] [warn] WorkflowManagerActor: Unhandled message: SubscribeToWorkflow(ffad895f-b7a4-438b-9cb0-8831a3c9f92e) | |
| [2016-05-25 11:47:05,369] [info] $a: Call-to-Backend assignments: w.t -> JES | |
| [2016-05-25 11:47:05,398] [info] $a transition from ReadyToMaterializeState to MaterializationSuccessfulState: shutting down | |
| [2016-05-25 11:47:05,434] [info] State is transitioning from InitializationPendingState to InitializationInProgressState. | |
| [2016-05-25 11:47:05,443] [info] State is now terminal. Shutting down. | |
| [2016-05-25 11:47:05,449] [warn] Failed to load the max-retries value from the configuration. Defaulting back to a value of 10. | |
| [2016-05-25 11:47:05,470] [warn] WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e received an unhandled message Event(ServiceRegistryFailure(MetadataService),WorkflowActorData(Some(Actor[akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/WorkflowExecutionActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e#-1674421486]),Some(EngineWorkflowDescriptor(BackendWorkflowDescriptor(ffad895f-b7a4-438b-9cb0-8831a3c9f92e,NamespaceWithWorkflow(None,Workflow(w,List(UnscopedDeclaration(WdlArrayType(WdlIntegerType),None,x,Some(WdlExpression((ArrayLiteral: values=[<string:8:19 integer "MTU=">, <string:8:22 integer "MTU=">, <string:8:25 integer "MTU=">, <string:8:28 integer "MTU=">, <string:8:31 integer "MTU=">]))))),List()),ArrayBuffer(),ArrayBuffer(),List([Task name=t commandTemplate=Vector(sleep , ${s})}]),Map(<string:8:28 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:25 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:22 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:12 identifier "ZG9ja2Vy"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:9 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:11 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:10 fqn "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:12 cmd_part "c2xlZXAg"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:7 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:1:6 identifier "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:16 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:7:10 identifier "dw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:14 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:3 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:3 type "QXJyYXk="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:22 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:31 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:20 string "dWJ1bnR1OmxhdGVzdA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:19 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| ),WdlSyntaxErrorFormatter(Map(<string:8:28 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:25 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:22 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:12 identifier "ZG9ja2Vy"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:9 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:11 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:10 fqn "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:12 cmd_part "c2xlZXAg"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:7 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:1:6 identifier "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:16 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:7:10 identifier "dw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:14 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:3 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:3 type "QXJyYXk="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:22 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:31 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:20 string "dWJ1bnR1OmxhdGVzdA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:19 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| )),(Document: imports=[], definitions=[(Task: name=<string:1:6 identifier "dA==">, declarations=[(Declaration: type=<string:2:3 type "SW50">, postfix=None, name=<string:2:7 identifier "cw==">, expression=None)], sections=[(RawCommand: parts=[<string:3:12 cmd_part "c2xlZXAg">, (CommandParameter: attributes=[], expr=<string:3:20 identifier "cw==">)]), (Runtime: map=[(RuntimeAttribute: key=<string:4:12 identifier "ZG9ja2Vy">, value=<string:4:20 string "dWJ1bnR1OmxhdGVzdA==">)])]), (Workflow: name=<string:7:10 identifier "dw==">, body=[(Declaration: type=(Type: name=<string:8:3 type "QXJyYXk=">, subtype=[<string:8:9 type "SW50">]), postfix=None, name=<string:8:14 identifier "eA==">, expression=(ArrayLiteral: values=[<string:8:19 integer "MTU=">, <string:8:22 integer "MTU=">, <string:8:25 integer "MTU=">, <string:8:28 integer "MTU=">, <string:8:31 integer "MTU=">])), (Scatter: item=<string:9:11 identifier "eQ==">, collection=<string:9:16 identifier "eA==">, body=[(Call: task=<string:10:10 fqn "dA==">, alias=None, body=(CallBody: declarations=[], io=[(Inputs: map=[(IOMapping: key=<string:10:20 identifier "cw==">, value=<string:10:22 identifier "eQ==">)])]))])])])),Map(w.x -> [15, 15, 15, 15, 15]),{ | |
| }),Map(w.x -> [15, 15, 15, 15, 15]),Map([Call name=t, task=[Task name=t commandTemplate=Vector(sleep , ${s})}]] -> JES),NoNewCalls)))) in state ExecutingWorkflowState | |
| [2016-05-25 11:47:05,473] [warn] WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e received an unhandled message Event(ServiceRegistryFailure(MetadataService),WorkflowActorData(Some(Actor[akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/WorkflowExecutionActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e#-1674421486]),Some(EngineWorkflowDescriptor(BackendWorkflowDescriptor(ffad895f-b7a4-438b-9cb0-8831a3c9f92e,NamespaceWithWorkflow(None,Workflow(w,List(UnscopedDeclaration(WdlArrayType(WdlIntegerType),None,x,Some(WdlExpression((ArrayLiteral: values=[<string:8:19 integer "MTU=">, <string:8:22 integer "MTU=">, <string:8:25 integer "MTU=">, <string:8:28 integer "MTU=">, <string:8:31 integer "MTU=">]))))),List()),ArrayBuffer(),ArrayBuffer(),List([Task name=t commandTemplate=Vector(sleep , ${s})}]),Map(<string:8:28 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:25 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:22 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:12 identifier "ZG9ja2Vy"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:9 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:11 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:10 fqn "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:12 cmd_part "c2xlZXAg"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:7 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:1:6 identifier "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:16 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:7:10 identifier "dw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:14 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:3 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:3 type "QXJyYXk="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:22 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:31 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:20 string "dWJ1bnR1OmxhdGVzdA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:19 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| ),WdlSyntaxErrorFormatter(Map(<string:8:28 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:25 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:22 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:12 identifier "ZG9ja2Vy"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:9 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:11 identifier "eQ=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:10 fqn "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:12 cmd_part "c2xlZXAg"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:7 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:1:6 identifier "dA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:10:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:9:16 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:7:10 identifier "dw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:14 identifier "eA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:2:3 type "SW50"> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:3:20 identifier "cw=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:3 type "QXJyYXk="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:22 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:31 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:4:20 string "dWJ1bnR1OmxhdGVzdA=="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| , <string:8:19 integer "MTU="> -> task t { | |
| Int s | |
| command {sleep ${s}} | |
| runtime {docker: "ubuntu:latest"} | |
| } | |
| workflow w { | |
| Array[Int] x = [15,15,15,15,15] | |
| scatter(y in x) { | |
| call t {input: s=y} | |
| } | |
| } | |
| )),(Document: imports=[], definitions=[(Task: name=<string:1:6 identifier "dA==">, declarations=[(Declaration: type=<string:2:3 type "SW50">, postfix=None, name=<string:2:7 identifier "cw==">, expression=None)], sections=[(RawCommand: parts=[<string:3:12 cmd_part "c2xlZXAg">, (CommandParameter: attributes=[], expr=<string:3:20 identifier "cw==">)]), (Runtime: map=[(RuntimeAttribute: key=<string:4:12 identifier "ZG9ja2Vy">, value=<string:4:20 string "dWJ1bnR1OmxhdGVzdA==">)])]), (Workflow: name=<string:7:10 identifier "dw==">, body=[(Declaration: type=(Type: name=<string:8:3 type "QXJyYXk=">, subtype=[<string:8:9 type "SW50">]), postfix=None, name=<string:8:14 identifier "eA==">, expression=(ArrayLiteral: values=[<string:8:19 integer "MTU=">, <string:8:22 integer "MTU=">, <string:8:25 integer "MTU=">, <string:8:28 integer "MTU=">, <string:8:31 integer "MTU=">])), (Scatter: item=<string:9:11 identifier "eQ==">, collection=<string:9:16 identifier "eA==">, body=[(Call: task=<string:10:10 fqn "dA==">, alias=None, body=(CallBody: declarations=[], io=[(Inputs: map=[(IOMapping: key=<string:10:20 identifier "cw==">, value=<string:10:22 identifier "eQ==">)])]))])])])),Map(w.x -> [15, 15, 15, 15, 15]),{ | |
| }),Map(w.x -> [15, 15, 15, 15, 15]),Map([Call name=t, task=[Task name=t commandTemplate=Vector(sleep , ${s})}]] -> JES),NoNewCalls)))) in state ExecutingWorkflowState | |
| [2016-05-25 11:47:05,496] [info] Starting calls: w.t:0:1, w.t:1:1, w.t:2:1, w.t:3:1, w.t:4:1 | |
| [2016-05-25 11:47:05,505] [error] Dispatcher [akka.dispatchers.slow-actor-dispatcher] not configured for path akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/WorkflowExecutionActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/ffad895f-b7a4-438b-9cb0-8831a3c9f92e-BackendPreparationActor-w.t:3:1 | |
| akka.ConfigurationException: Dispatcher [akka.dispatchers.slow-actor-dispatcher] not configured for path akka://cromwell-system/user/WorkflowManagerActor/WorkflowActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/WorkflowExecutionActor-ffad895f-b7a4-438b-9cb0-8831a3c9f92e/ffad895f-b7a4-438b-9cb0-8831a3c9f92e-BackendPreparationActor-w.t:3:1 | |
| at akka.actor.LocalActorRefProvider.actorOf(ActorRefProvider.scala:714) | |
| at akka.actor.dungeon.Children$class.makeChild(Children.scala:206) | |
| at akka.actor.dungeon.Children$class.actorOf(Children.scala:37) | |
| at akka.actor.ActorCell.actorOf(ActorCell.scala:369) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.cromwell$engine$workflow$lifecycle$execution$WorkflowExecutionActor$$processRunnableJob(WorkflowExecutionActor.scala:308) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$18.apply(WorkflowExecutionActor.scala:283) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$18.apply(WorkflowExecutionActor.scala:282) | |
| at scala.collection.immutable.List.map(List.scala:273) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.cromwell$engine$workflow$lifecycle$execution$WorkflowExecutionActor$$startRunnableScopes(WorkflowExecutionActor.scala:282) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$3.applyOrElse(WorkflowExecutionActor.scala:170) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor$$anonfun$3.applyOrElse(WorkflowExecutionActor.scala:168) | |
| at scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:36) | |
| at akka.actor.FSM$class.processEvent(FSM.scala:604) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.akka$actor$LoggingFSM$$super$processEvent(WorkflowExecutionActor.scala:110) | |
| at akka.actor.LoggingFSM$class.processEvent(FSM.scala:734) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.processEvent(WorkflowExecutionActor.scala:110) | |
| at akka.actor.FSM$class.akka$actor$FSM$$processMsg(FSM.scala:598) | |
| at akka.actor.FSM$$anonfun$receive$1.applyOrElse(FSM.scala:592) | |
| at akka.actor.Actor$class.aroundReceive(Actor.scala:467) | |
| at cromwell.engine.workflow.lifecycle.execution.WorkflowExecutionActor.aroundReceive(WorkflowExecutionActor.scala:110) | |
| at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516) | |
| at akka.actor.ActorCell.invoke(ActorCell.scala:487) | |
| at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238) | |
| at akka.dispatch.Mailbox.run(Mailbox.scala:220) | |
| at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397) | |
| at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) | |
| at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) | |
| at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) | |
| at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) |
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