Created
April 13, 2010 20:44
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Testing HaarSeg segmentation algorithm on SNP data
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| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.') | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(0,50000)) | |
| lines(x$Segmented,col='red') | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(25000,50000)) | |
| lines(x$Segmented,col='red') | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(27000,38000)) | |
| lines(x$Segmented,col='red') | |
| x = haarSeg(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),breaksFdrQ=0.000001,haarStartLevel=3,haarEndLevel=6) | |
| lines(x$Segmented,col='green') | |
| x = haarSeg(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),breaksFdrQ=0.000001,haarStartLevel=4,haarEndLevel=6) | |
| lines(x$Segmented,col='yellow') | |
| lines(x$Segmented,col='blue') | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(25000,50000)) | |
| lines(x$Segmented,col='blue') | |
| par(mfrow=c(2,1)) | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(25000,50000)) | |
| lines(x$Segmented,col='blue') | |
| plot(abs(exprs(eset)[tmp,223]-exprs(eset)[tmp,1]),pch='.',xlim=c(25000,50000)) | |
| plot(abs(baf(eset)[tmp,223]-baf(eset)[tmp,1]),pch='.',xlim=c(25000,50000)) | |
| lines(x$Segmented,col='blue') | |
| plot(exprs(eset)[tmp,223]-exprs(eset)[tmp,1],pch='.',xlim=c(25000,50000),ylim=c(-1.5,1.5)) |
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