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@seandavi
Created November 20, 2018 15:33
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For luqum issue
{
"sra_experiment_joined2": {
"mappings": {
"doc": {
"properties": {
"library_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Insdc": {
"type": "boolean"
},
"center_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"sample": {
"properties": {
"Insdc": {
"type": "boolean"
},
"center_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"accession": {
"fields": {
"keyword": {
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"type": "keyword"
}
},
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"ontology_terms": {
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}
},
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"Status": {
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"type": "keyword"
}
},
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},
"title": {
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"type": "keyword"
}
},
"type": "text"
},
"sample_type": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastMetaUpdate": {
"type": "long"
},
"BioSample": {
"fields": {
"keyword": {
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"type": "keyword"
}
},
"type": "text"
},
"taxon_id": {
"type": "long"
},
"GEO": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"broker_name": {
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}
},
"type": "text"
},
"Received": {
"type": "long"
},
"xrefs": {
"include_in_parent": true,
"type": "nested",
"properties": {
"db": {
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"type": "keyword"
}
},
"type": "text"
},
"id": {
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"type": "keyword"
}
},
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}
},
"description": {
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"type": "keyword"
}
},
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},
"numeric_properties": {
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},
"unit_id": {
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"type": "keyword"
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"property_id": {
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},
"identifiers": {
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"type": "nested",
"properties": {
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"type": "keyword"
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}
}
},
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"type": "keyword"
}
},
"type": "text"
},
"attributes": {
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"type": "nested",
"properties": {
"tag": {
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"ignore_above": 256,
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}
},
"type": "text"
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"value": {
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"type": "keyword"
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},
"organism": {
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"type": "keyword"
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"type": "text"
}
}
},
"design": {
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"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Status": {
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"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"title": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"library_layout_length": {
"type": "float"
},
"platform": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
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"LastMetaUpdate": {
"type": "long"
},
"library_construction_protocol": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"library_selection": {
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"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"library_strategy": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"broker_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Received": {
"type": "long"
},
"xrefs": {
"include_in_parent": true,
"type": "nested",
"properties": {
"db": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"id": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"library_layout_sdev": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Published": {
"type": "long"
},
"library_layout": {
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"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"library_source": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastUpdate": {
"type": "long"
},
"runs": {
"include_in_parent": true,
"type": "nested",
"properties": {
"Status": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastUpdate": {
"type": "long"
},
"nreads": {
"type": "long"
},
"run_center": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Insdc": {
"type": "boolean"
},
"Received": {
"type": "long"
},
"center_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"spot_length": {
"type": "long"
},
"identifiers": {
"include_in_parent": true,
"type": "nested",
"properties": {
"namespace": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"id": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"uuid": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"broker_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"reads": {
"include_in_parent": true,
"type": "nested",
"properties": {
"read_class": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"read_type": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"base_coord": {
"type": "long"
},
"read_index": {
"type": "long"
}
}
},
"alias": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastMetaUpdate": {
"type": "long"
},
"Published": {
"type": "long"
},
"attributes": {
"include_in_parent": true,
"type": "nested",
"properties": {
"tag": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"value": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"experiment_accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"run_accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"study": {
"properties": {
"Status": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastUpdate": {
"type": "long"
},
"identifiers": {
"include_in_parent": true,
"type": "nested",
"properties": {
"namespace": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"id": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"description": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"Insdc": {
"type": "boolean"
},
"Received": {
"type": "long"
},
"center_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"title": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"abstract": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"BioProject": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"broker_name": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"study_type": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"alias": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"LastMetaUpdate": {
"type": "long"
},
"xrefs": {
"include_in_parent": true,
"type": "nested",
"properties": {
"db": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"id": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"Published": {
"type": "long"
},
"attributes": {
"include_in_parent": true,
"type": "nested",
"properties": {
"tag": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"value": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"GEO": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"study_accession": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"identifiers": {
"include_in_parent": true,
"type": "nested",
"properties": {
"namespace": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"id": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"uuid": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
},
"instrument_model": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"alias": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"attributes": {
"include_in_parent": true,
"type": "nested",
"properties": {
"tag": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
},
"value": {
"fields": {
"keyword": {
"ignore_above": 256,
"type": "keyword"
}
},
"type": "text"
}
}
}
}
}
}
}
}
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