Created
April 20, 2015 20:19
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Get all SRA files associated with one or more SRA accessions using SRAdb
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| # Run this in R | |
| # Supply any SRA accessions that you like. | |
| # The .sra files will be downloaded. | |
| # The actual sequence will need to be extracted | |
| # with the SRA SDK (for example fastq-dump) | |
| source('http://bioconductor.org/biocLite.R') | |
| biocLite('SRAdb') | |
| library(SRAdb) | |
| sradb = getSRAdbFile() | |
| con = dbConnect(SQLite(),sradb) | |
| results = getSRAfile(c('SRP048560','SRP049295'),con) |
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