data_loader.py

import json
from pytorch_pretrained_bert.tokenization import whitespace_tokenize
import collections
from copy import deepcopy
class SquadExample(object):
    """
       A single training/test example for the Squad dataset.
       For examples without an answer, the start and end position are -1.
       """

    def __init__(self,
                 qas_id,
                 question_text,
                 doc_tokens,
                 orig_answer_text=None,
                 start_position=None,
                 end_position=None,
                 is_impossible=None):
        self.qas_id = qas_id
        self.question_text = question_text
        self.doc_tokens = doc_tokens
        self.orig_answer_text = orig_answer_text
        self.start_position = start_position
        self.end_position = end_position
        self.is_impossible = is_impossible

    def __str__(self):
        return self.__repr__()

    def __repr__(self):
        s = ""
        s += "qas_id: %s" % self.qas_id
        s += ", question_text: %s" % self.question_text
        s += ", doc_tokens: [%s]" % " ".join(self.doc_tokens)
        if self.start_position:
            s += ", start_position: %d" % self.start_position
        if self.end_position:
            s += ", end_position: %d" % self.end_position
        if self.is_impossible:
            s += ", is_impossible: %r" % self.is_impossible
        return s


def convert_examples_to_features(examples, tokenizer, max_seq_length,
                                 doc_stride, max_query_length, is_training):
    """Loads a data file into a list of `InputBatch`s."""

    unique_id = 1000000000

    features = []
    for (example_index, example) in enumerate(examples):
        query_tokens = tokenizer.tokenize(example.question_text)

        if len(query_tokens) > max_query_length:
            query_tokens = query_tokens[0:max_query_length]

        tok_to_orig_index = []
        orig_to_tok_index = []
        all_doc_tokens = []
        for (i, token) in enumerate(example.doc_tokens):
            orig_to_tok_index.append(len(all_doc_tokens))
            sub_tokens = tokenizer.tokenize(token)
            for sub_token in sub_tokens:
                tok_to_orig_index.append(i)
                all_doc_tokens.append(sub_token)

        tok_start_position = None
        tok_end_position = None
        if is_training and example.is_impossible:
            tok_start_position = -1
            tok_end_position = -1
        if is_training and not example.is_impossible:
            tok_start_position = orig_to_tok_index[example.start_position]
            if example.end_position < len(example.doc_tokens) - 1:
                tok_end_position = orig_to_tok_index[example.end_position + 1] - 1
            else:
                tok_end_position = len(all_doc_tokens) - 1
            (tok_start_position, tok_end_position) = _improve_answer_span(
                all_doc_tokens, tok_start_position, tok_end_position, tokenizer,
                example.orig_answer_text)

        # The -3 accounts for [CLS], [SEP] and [SEP]
        max_tokens_for_doc = max_seq_length - len(query_tokens) - 3

        # We can have documents that are longer than the maximum sequence length.
        # To deal with this we do a sliding window approach, where we take chunks
        # of the up to our max length with a stride of `doc_stride`.
        _DocSpan = collections.namedtuple(  # pylint: disable=invalid-name
            "DocSpan", ["start", "length"])
        doc_spans = []
        start_offset = 0
        while start_offset < len(all_doc_tokens):
            length = len(all_doc_tokens) - start_offset
            if length > max_tokens_for_doc:
                length = max_tokens_for_doc
            doc_spans.append(_DocSpan(start=start_offset, length=length))
            if start_offset + length == len(all_doc_tokens):
                break
            start_offset += min(length, doc_stride)

        for (doc_span_index, doc_span) in enumerate(doc_spans):
            tokens = []
            token_to_orig_map = {}
            token_is_max_context = {}
            segment_ids = []
            tokens.append("[CLS]")
            segment_ids.append(0)
            for token in query_tokens:
                tokens.append(token)
                segment_ids.append(0)
            tokens.append("[SEP]")
            segment_ids.append(0)

            context_tokens = list()
            context_tokens.append("[CLS]")
            for i in range(doc_span.length):
                split_token_index = doc_span.start + i
                token_to_orig_map[len(tokens)] = tok_to_orig_index[split_token_index]

                is_max_context = _check_is_max_context(doc_spans, doc_span_index,
                                                       split_token_index)
                token_is_max_context[len(tokens)] = is_max_context
                tokens.append(all_doc_tokens[split_token_index])
                segment_ids.append(1)
                context_tokens.append(all_doc_tokens[split_token_index])
            tokens.append("[SEP]")
            segment_ids.append(1)
            context_tokens.append("[SEP]")

            input_ids = tokenizer.convert_tokens_to_ids(tokens)

            # The mask has 1 for real tokens and 0 for padding tokens. Only real
            # tokens are attended to.
            input_mask = [1] * len(input_ids)

            # Zero-pad up to the sequence length.
            while len(input_ids) < max_seq_length:
                input_ids.append(0)
                input_mask.append(0)
                segment_ids.append(0)

            assert len(input_ids) == max_seq_length
            assert len(input_mask) == max_seq_length
            assert len(segment_ids) == max_seq_length

            start_position = None
            end_position = None
            noq_start_position = None
            noq_end_position = None

            if is_training and not example.is_impossible:
                # For training, if our document chunk does not contain an annotation
                # we throw it out, since there is nothing to predict.
                doc_start = doc_span.start
                doc_end = doc_span.start + doc_span.length - 1
                out_of_span = False
                if not (tok_start_position >= doc_start and
                        tok_end_position <= doc_end):
                    out_of_span = True
                if out_of_span:
                    start_position = 0
                    end_position = 0
                    noq_start_position = 0
                    noq_end_position = 0
                else:
                    doc_offset = len(query_tokens) + 2
                    start_position = tok_start_position - doc_start + doc_offset
                    end_position = tok_end_position - doc_start + doc_offset

                    # plus one for [CLS] token
                    noq_start_position = tok_start_position - doc_start + 1
                    noq_end_position = tok_end_position - doc_start + 1

                if out_of_span:
                    continue

            if is_training and example.is_impossible:
                start_position = 0
                end_position = 0
                noq_start_position = 0
                noq_end_position = 0
            q_tokens = deepcopy(query_tokens)
            q_tokens.insert(0, "[CLS]")
            q_tokens.append("[SEP]")
            q_ids = tokenizer.convert_tokens_to_ids(q_tokens)
            c_ids = tokenizer.convert_tokens_to_ids(context_tokens)

            # pad up to maximum length
            while len(q_ids) < max_query_length:
                q_ids.append(0)

            while len(c_ids) < max_seq_length:
                c_ids.append(0)

            # BIO tagging scheme
            tag_ids = [0] * len(c_ids)  # Outside
            if noq_start_position is not None and noq_end_position is not None:
                tag_ids[noq_start_position] = 1  # Begin
                # Inside tag
                for idx in range(noq_start_position + 1, noq_end_position + 1):
                    tag_ids[idx] = 2
            
            assert len(tag_ids) == len(c_ids), "length of tag :{}, length of c :{}".format(len(tag_ids), len(c_ids))
            features.append(
                InputFeatures(
                    unique_id=unique_id,
                    example_index=example_index,
                    doc_span_index=doc_span_index,
                    tokens=tokens,
                    token_to_orig_map=token_to_orig_map,
                    token_is_max_context=token_is_max_context,
                    input_ids=input_ids,
                    input_mask=input_mask,
                    c_ids=c_ids,
                    context_tokens=context_tokens,
                    q_ids=q_ids,
                    q_tokens=q_tokens,
                    answer_text=example.orig_answer_text,
                    tag_ids=tag_ids,
                    segment_ids=segment_ids,
                    noq_start_position=noq_start_position,
                    noq_end_position=noq_end_position,
                    start_position=start_position,
                    end_position=end_position,
                    is_impossible=example.is_impossible))
            unique_id += 1

    return features


class InputFeatures(object):
    """A single set of features of data."""

    def __init__(self,
                 unique_id,
                 example_index,
                 doc_span_index,
                 tokens,
                 token_to_orig_map,
                 token_is_max_context,
                 input_ids,
                 c_ids,
                 context_tokens,
                 q_ids,
                 q_tokens,
                 tag_ids,
                 input_mask,
                 segment_ids,
                 noq_start_position=None,
                 noq_end_position=None,
                 start_position=None,
                 end_position=None,
                 is_impossible=None):
        self.unique_id = unique_id
        self.example_index = example_index
        self.doc_span_index = doc_span_index
        self.tokens = tokens
        self.token_to_orig_map = token_to_orig_map
        self.token_is_max_context = token_is_max_context
        self.input_ids = input_ids
        self.c_ids = c_ids
        self.context_tokens = context_tokens
        self.q_ids = q_ids
        self.q_tokens = q_tokens
        self.tag_ids = tag_ids
        self.input_mask = input_mask
        self.segment_ids = segment_ids
        self.noq_start_position = noq_start_position
        self.noq_end_position = noq_end_position
        self.start_position = start_position
        self.end_position = end_position
        self.is_impossible = is_impossible


def read_squad_examples(input_file, is_training, version_2_with_negative=False, debug=False):
    """Read a SQuAD json file into a list of SquadExample."""
    with open(input_file, "r", encoding='utf-8') as reader:
        input_data = json.load(reader)["data"]

    def is_whitespace(c):
        if c == " " or c == "\t" or c == "\r" or c == "\n" or ord(c) == 0x202F:
            return True
        return False

    examples = []
    if debug:
        input_data = input_data[:10]
    for entry in input_data:
        for paragraph in entry["paragraphs"]:
            paragraph_text = paragraph["context"]
            doc_tokens = []
            char_to_word_offset = []
            prev_is_whitespace = True
            for c in paragraph_text:
                if is_whitespace(c):
                    prev_is_whitespace = True
                else:
                    if prev_is_whitespace:
                        doc_tokens.append(c)
                    else:
                        doc_tokens[-1] += c
                    prev_is_whitespace = False
                char_to_word_offset.append(len(doc_tokens) - 1)

            for qa in paragraph["qas"]:
                qas_id = qa["id"]
                question_text = qa["question"]
                start_position = None
                end_position = None
                orig_answer_text = None
                is_impossible = False
                if is_training:
                    if version_2_with_negative:
                        is_impossible = qa["is_impossible"]
                    # if (len(qa["answers"]) != 1) and (not is_impossible):
                    #     raise ValueError(
                    #         "For training, each question should have exactly 1 answer.")
                    if not is_impossible:
                        answer = qa["answers"][0]
                        orig_answer_text = answer["text"]
                        answer_offset = answer["answer_start"]
                        answer_length = len(orig_answer_text)
                        start_position = char_to_word_offset[answer_offset]
                        end_position = char_to_word_offset[answer_offset + answer_length - 1]
                        # Only add answers where the text can be exactly recovered from the
                        # document. If this CAN'T happen it's likely due to weird Unicode
                        # stuff so we will just skip the example.
                        #
                        # Note that this means for training mode, every example is NOT
                        # guaranteed to be preserved.
                        actual_text = " ".join(doc_tokens[start_position:(end_position + 1)])
                        cleaned_answer_text = " ".join(
                            whitespace_tokenize(orig_answer_text))
                        if actual_text.find(cleaned_answer_text) == -1:
                            continue
                    else:
                        start_position = -1
                        end_position = -1
                        orig_answer_text = ""

                example = SquadExample(
                    qas_id=qas_id,
                    question_text=question_text,
                    doc_tokens=doc_tokens,
                    orig_answer_text=orig_answer_text,
                    start_position=start_position,
                    end_position=end_position,
                    is_impossible=is_impossible)
                examples.append(example)
    return examples


def _improve_answer_span(doc_tokens, input_start, input_end, tokenizer,
                         orig_answer_text):
    """Returns tokenized answer spans that better match the annotated answer."""

    # The SQuAD annotations are character based. We first project them to
    # whitespace-tokenized words. But then after WordPiece tokenization, we can
    # often find a "better match". For example:
    #
    #   Question: What year was John Smith born?
    #   Context: The leader was John Smith (1895-1943).
    #   Answer: 1895
    #
    # The original whitespace-tokenized answer will be "(1895-1943).". However
    # after tokenization, our tokens will be "( 1895 - 1943 ) .". So we can match
    # the exact answer, 1895.
    #
    # However, this is not always possible. Consider the following:
    #
    #   Question: What country is the top exporter of electornics?
    #   Context: The Japanese electronics industry is the lagest in the world.
    #   Answer: Japan
    #
    # In this case, the annotator chose "Japan" as a character sub-span of
    # the word "Japanese". Since our WordPiece tokenizer does not split
    # "Japanese", we just use "Japanese" as the annotation. This is fairly rare
    # in SQuAD, but does happen.
    tok_answer_text = " ".join(tokenizer.tokenize(orig_answer_text))

    for new_start in range(input_start, input_end + 1):
        for new_end in range(input_end, new_start - 1, -1):
            text_span = " ".join(doc_tokens[new_start:(new_end + 1)])
            if text_span == tok_answer_text:
                return (new_start, new_end)

    return (input_start, input_end)


def _check_is_max_context(doc_spans, cur_span_index, position):
    """Check if this is the 'max context' doc span for the token."""

    # Because of the sliding window approach taken to scoring documents, a single
    # token can appear in multiple documents. E.g.
    #  Doc: the man went to the store and bought a gallon of milk
    #  Span A: the man went to the
    #  Span B: to the store and bought
    #  Span C: and bought a gallon of
    #  ...
    #
    # Now the word 'bought' will have two scores from spans B and C. We only
    # want to consider the score with "maximum context", which we define as
    # the *minimum* of its left and right context (the *sum* of left and
    # right context will always be the same, of course).
    #
    # In the example the maximum context for 'bought' would be span C since
    # it has 1 left context and 3 right context, while span B has 4 left context
    # and 0 right context.
    best_score = None
    best_span_index = None
    for (span_index, doc_span) in enumerate(doc_spans):
        end = doc_span.start + doc_span.length - 1
        if position < doc_span.start:
            continue
        if position > end:
            continue
        num_left_context = position - doc_span.start
        num_right_context = end - position
        score = min(num_left_context, num_right_context) + 0.01 * doc_span.length
        if best_score is None or score > best_score:
            best_score = score
            best_span_index = span_index

    return cur_span_index == best_span_index


    def get_data_loader(self, file):
        train_examples = read_squad_examples(file, is_training=True, debug=config.debug)
        train_features = convert_examples_to_features(train_examples,
                                                      tokenizer=self.tokenizer,
                                                      max_seq_length=config.max_seq_len,
                                                      max_query_length=config.max_query_len,
                                                      doc_stride=128,
                                                      is_training=True)

        all_c_ids = torch.tensor([f.c_ids for f in train_features], dtype=torch.long)
        all_c_lens = torch.sum(torch.sign(all_c_ids), 1).long()
        all_tag_ids = torch.tensor([f.tag_ids for f in train_features], dtype=torch.long)
        all_q_ids = torch.tensor([f.q_ids for f in train_features], dtype=torch.long)
        all_input_ids = torch.tensor([f.input_ids for f in train_features], dtype=torch.long)
        all_input_mask = torch.tensor([f.input_mask for f in train_features], dtype=torch.long)
        all_segment_ids = torch.tensor([f.segment_ids for f in train_features], dtype=torch.long)
        all_start_positions = torch.tensor([f.start_position for f in train_features], dtype=torch.long)
        all_end_positions = torch.tensor([f.end_position for f in train_features], dtype=torch.long)

        train_data = TensorDataset(all_c_ids, all_c_lens, all_tag_ids, all_q_ids, \
                                   all_input_ids, all_input_mask, all_segment_ids, all_start_positions, all_end_positions)
        sampler = RandomSampler(train_data)
        train_loader = DataLoader(train_data, sampler=sampler, batch_size=config.batch_size)

        return train_loader