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seanpue/gist:52c85839439052cc07e4

Created May 26, 2015 20:17
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.Rmd to PDF
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gistfile1.txt
#From http://stackoverflow.com/questions/11025123/how-to-convert-r-markdown-to-pdf
rmd2pdf.bash:
RMDFILE=`echo ${1%%.*}`
echo "PROCESSING $RMDFILE"
Rscript -e "require(knitr); require(markdown); knit('$RMDFILE.rmd', '$RMDFILE.md'); markdownToHTML('$RMDFILE.md', '$RMDFILE.html', options=c('use_xhml'))"
pandoc -s "$RMDFILE.html" -o "$RMDFILE.pdf"
for f in *Rmd;do ./rmd2pdf.bash $f;done
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