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hello@largeweb2:~$ cd /webapps/openprescribing/openprescribing/
hello@largeweb2:/webapps/openprescribing/openprescribing$ . ../.venv/bin/activate
(.venv35) hello@largeweb2:/webapps/openprescribing/openprescribing$ ./manage.py send_monthly_alerts --max_errors 500
/webapps/openprescribing/openprescribing/frontend/views/bookmark_utils.py:205: RuntimeWarning: Mean of empty slice
  self.target_means.append(np.nanmean(window))
/webapps/openprescribing/.venv35/lib/python3.5/site-packages/numpy/lib/nanfunctions.py:1667: RuntimeWarning: Degrees of freedom <= 0 for slice
.
  keepdims=keepdims)

console: [opttick] - GTM-5PX77GZ: exception: TypeError: undefined is not a function (evaluating 'p.getEntriesByName(b)')

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# packages in environment at /home/seb/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0                    py38_0  
_libgcc_mutex             0.1                        main  
alabaster                 0.7.12                     py_0  
anaconda                  2020.07                  py38_0  
anaconda-client           1.7.2                    py38_0  
anaconda-navigator        1.9.12                   py38_0  
anaconda-project          0.8.4                      py_0  

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digraph finite_state_machine {
	#rankdir=LR;
	size="8,5"
	node [shape = doublecircle]; start; succeeded; failed_missing_outputs;  failed_dependencies; failed_action; failed_validation; zombie;failed_clone;
	node [shape = circle, width = "2", color="black"];
	start -> pending[ label = "" ];
    pending -> acked;
    acked -> cloning_repo[label = "clone repo"];
    cloning_repo -> failed_clone[label = ""];

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digraph finite_state_machine_group {
	#rankdir=LR;
	size="8,5"
	node [shape = doublecircle]; start; failed; succeeded;
	node [shape = circle, width = "2", color="black"];
	start -> pending[ label = "ack" ];
    pending -> running[ label = "any subjobs running"]
    running -> running_with_failures[ label = "any subjobs failed"];
    running -> succeeded[ label = "all subjobs finished"];

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diff --git a/make_project_yaml.py b/make_project_yaml.py
index 559be86..0ddf953 100755
--- a/make_project_yaml.py
+++ b/make_project_yaml.py
@@ -137,7 +137,7 @@ for outcome in outcomes:
         logfile=f"log/07a_an_multivariable_cox_models_{outcome}.log",
     )
     add_action(
-        "07b_an_multivariable_cox_models_FULL",
+        "07d_an_multivariable_cox_models_FULL",

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docker run --privileged -it -v /var/run/docker.sock:/var/run/docker.sock jongallant/ubuntu-docker-client 
docker run --net=host --ipc=host --uts=host --pid=host -it --security-opt=seccomp=unconfined --privileged --rm -v /:/host alpine /bin/sh

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import subprocess
import re
import sys
import json

output = subprocess.check_output(
    ["docker", "logs", "job-runner_job-runner_1"],
    encoding="utf-8",
    stderr=subprocess.STDOUT,
)

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                CREATE TABLE #codelist_2_flu_vaccine_clinical_current (
                  -- Because some code systems are case-sensitive we need to
                  -- use a case-sensitive collation here
                  code VARCHAR(5) COLLATE Latin1_General_BIN,
                  category VARCHAR(MAX)
                )