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sephraim/import_vcf_into_df.R

Created March 28, 2017 22:02
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Import VCF file into data frame in R
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import_vcf_into_df.R
library(vcfR)
# Import VCF
my.vcf <- read.vcfR('my.vcf.gz')
# Combine CHROM thru FILTER cols + INFO cols
my.vcf.df <- cbind(as.data.frame(getFIX(my.vcf)), INFO2df(my.vcf))
@ale07alvarez
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This did not work for me

Error in .setupMethodsTables(fdef, initialize = TRUE) :
no slot of name "group" for this object of class "derivedDefaultMethod"

@cjgunase
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it worked perfectly.

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