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April 25, 2011 12:23
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| zerg@bakumatsu:~/src/bs-eagle/blue-sky$ gdb python | |
| GNU gdb (GDB) 7.2-ubuntu | |
| Copyright (C) 2010 Free Software Foundation, Inc. | |
| License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> | |
| This is free software: you are free to change and redistribute it. | |
| There is NO WARRANTY, to the extent permitted by law. Type "show copying" | |
| and "show warranty" for details. | |
| This GDB was configured as "x86_64-linux-gnu". | |
| For bug reporting instructions, please see: | |
| <http://www.gnu.org/software/gdb/bugs/>... | |
| Reading symbols from /usr/bin/python...Reading symbols from /usr/lib/debug/usr/bin/python2.6...done. | |
| done. | |
| (gdb) b bs_arrbase.h:102 | |
| No source file named bs_arrbase.h. | |
| Make breakpoint pending on future shared library load? (y or [n]) y | |
| Breakpoint 1 (bs_arrbase.h:102) pending. | |
| (gdb) r /usr/bin/ipython | |
| Starting program: /usr/bin/python /usr/bin/ipython | |
| [Thread debugging using libthread_db enabled] | |
| Python 2.6.6 (r266:84292, Sep 15 2010, 16:22:56) | |
| Type "copyright", "credits" or "license" for more information. | |
| IPython 0.10 -- An enhanced Interactive Python. | |
| ? -> Introduction and overview of IPython's features. | |
| %quickref -> Quick reference. | |
| help -> Python's own help system. | |
| object? -> Details about 'object'. ?object also works, ?? prints more. | |
| In [1]: from numpy import zeros as Z | |
| In [2]: import bs | |
| [New Thread 0x7ffff0321700 (LWP 29886)] | |
| [New Thread 0x7fffefb20700 (LWP 29887)] | |
| [Mon Apr 25 18:21:07 2011]: Main Blue-Sky Config Parser: No config file "/etc/blue-sky/blue-sky.conf" | |
| [Mon Apr 25 18:21:07 2011]: boost::filesystem::directory_iterator::construct: No such file or directory: "/home/zerg/src/bs-eagle/blue-sky/share/blue-sky/plugins" | |
| [Mon Apr 25 18:21:07 2011]: boost::filesystem::directory_iterator::construct: No such file or directory: "/home/zerg/src/bs-eagle/blue-sky/share/blue-sky/plugins" | |
| [Mon Apr 25 18:21:07 2011]: boost::filesystem::directory_iterator::construct: No such file or directory: "/home/zerg/.blue-sky/plugins" | |
| [Mon Apr 25 18:21:07 2011]: boost::filesystem::directory_iterator::construct: No such file or directory: "/home/zerg/.blue-sky/plugins" | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mtx_d.so (bs_bos_core_base) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_d.so (bs_bos_core_base, bs_mtx, bs_lsolvers, bs_bos_core_data_storage, bs_mesh, bs_scal, bs_pvt) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_lsolvers_d.so (bs_bos_core_base, bs_mtx) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_data_storage_d.so (bs_bos_core_base, bs_mtx) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_scal_d.so (bs_bos_core_base, bs_mtx) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_pvt_d.so (bs_bos_core_base, bs_mtx, bs_scal) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mesh_d.so (bs_bos_core_base, bs_mtx, bs_bos_core_data_storage) | |
| 0(0) 1(6) 2(1) 3(3) 4(4) 5(8) 6(5) 7(7) 8(2) | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libcommon_types_d.so ::: | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_base_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mtx_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_lsolvers_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_data_storage_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mesh_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_scal_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_pvt_d.so ::: 1.0.0 | |
| [Mon Apr 25 18:21:07 2011]: /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_d.so ::: | |
| [Mon Apr 25 18:21:07 2011]: BlueSky kernel Python subsystem initialized successfully under namespace bs | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libcommon_types_d.so loaded, Python subsystem initialized (namespace bs.comm) | |
| bos_out log has been registered! | |
| bos_warn log has been registered! | |
| bos_err log has been registered! | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_base_d.so loaded, Python subsystem initialized (namespace bs.bs_bos_core_base) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mtx_d.so loaded, Python subsystem initialized (namespace bs.mx) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_lsolvers_d.so loaded, Python subsystem initialized (namespace bs.lsolvers) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_data_storage_d.so loaded, Python subsystem initialized (namespace bs.bs_bos_core_data_storage) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_mesh_d.so loaded, Python subsystem initialized (namespace bs.bs_mesh) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_scal_d.so loaded, Python subsystem initialized (namespace bs.bs_scal) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_pvt_d.so loaded, Python subsystem initialized (namespace bs.bs_pvt) | |
| BlueSky plugin /home/zerg/src/bs-eagle/blue-sky/exe/debug/plugins/libbs_bos_core_d.so loaded, Python subsystem initialized (namespace bs.bs_bos_core) | |
| In [3]: bs.t | |
| bs.test_anyobj bs.test_nparray_d bs.test_nparray_f bs.test_nparray_i bs.test_nparray_l bs.test_return_d bs.type_descriptor bs.type_info | |
| In [3]: bs.te | |
| bs.test_anyobj bs.test_nparray_d bs.test_nparray_f bs.test_nparray_i bs.test_nparray_l bs.test_return_d | |
| In [3]: bs.test_n | |
| bs.test_nparray_d bs.test_nparray_f bs.test_nparray_i bs.test_nparray_l | |
| In [3]: bs.test_nparray_d (Z (10), Z (10)) | |
| 10 | |
| 0 | |
| Breakpoint 1, blue_sky::bs_arrbase<double>::begin (this=0x12a5ea0) at kernel/include/bs_arrbase.h:102 | |
| 102 if(this->size() > 0) | |
| (gdb) l | |
| 97 virtual void clear() { | |
| 98 resize(0); | |
| 99 } | |
| 100 | |
| 101 virtual iterator begin() { | |
| 102 if(this->size() > 0) | |
| 103 return &ss(0); | |
| 104 else return 0; | |
| 105 } | |
| 106 virtual const_iterator begin() const { | |
| (gdb) c | |
| Continuing. | |
| Breakpoint 1, blue_sky::bs_arrbase<double>::begin (this=0x12a5ea0) at kernel/include/bs_arrbase.h:102 | |
| 102 if(this->size() > 0) | |
| (gdb) b delete | |
| Function "delete" not defined. | |
| Make breakpoint pending on future shared library load? (y or [n]) n | |
| (gdb) help breakpoint | |
| Making program stop at certain points. | |
| List of commands: | |
| awatch -- Set a watchpoint for an expression | |
| break -- Set breakpoint at specified line or function | |
| catch -- Set catchpoints to catch events | |
| catch assert -- Catch failed Ada assertions | |
| catch catch -- Catch an exception | |
| catch exception -- Catch Ada exceptions | |
| catch exec -- Catch calls to exec | |
| catch fork -- Catch calls to fork | |
| catch syscall -- Catch system calls by their names and/or numbers | |
| catch throw -- Catch an exception | |
| catch vfork -- Catch calls to vfork | |
| clear -- Clear breakpoint at specified line or function | |
| commands -- Set commands to be executed when a breakpoint is hit | |
| condition -- Specify breakpoint number N to break only if COND is true | |
| delete -- Delete some breakpoints or auto-display expressions | |
| delete bookmark -- Delete a bookmark from the bookmark list | |
| delete breakpoints -- Delete some breakpoints or auto-display expressions | |
| delete checkpoint -- Delete a checkpoint (experimental) | |
| delete display -- Cancel some expressions to be displayed when program stops | |
| delete mem -- Delete memory region | |
| delete tracepoints -- Delete specified tracepoints | |
| delete tvariable -- Delete one or more trace state variables | |
| disable -- Disable some breakpoints | |
| disable breakpoints -- Disable some breakpoints | |
| disable display -- Disable some expressions to be displayed when program stops | |
| disable mem -- Disable memory region | |
| ---Type <return> to continue, or q <return> to quit---q | |
| Quit | |
| (gdb) delete 1 | |
| (gdb) c | |
| Continuing. | |
| Program received signal SIGSEGV, Segmentation fault. | |
| _wordcopy_fwd_aligned (dstp=<value optimized out>, srcp=<value optimized out>, len=16) at wordcopy.c:119 | |
| 119 wordcopy.c: No such file or directory. | |
| in wordcopy.c | |
| (gdb) bt | |
| #0 _wordcopy_fwd_aligned (dstp=<value optimized out>, srcp=<value optimized out>, len=16) at wordcopy.c:119 | |
| #1 0x00007ffff6a41652 in memmove (dest=0x0, src=<value optimized out>, len=80) at memmove.c:73 | |
| #2 0x00007ffff21d3e07 in std::__copy_move<false, true, std::random_access_iterator_tag>::__copy_m<double> (__first=0xfdd360, __last=0xfdd3b0, __result=0x0) | |
| at /usr/include/c++/4.5/bits/stl_algobase.h:386 | |
| #3 0x00007ffff21f8901 in std::__copy_move_a<false, double*, double*> (__first=0xfdd360, __last=0xfdd3b0, __result=0x0) at /usr/include/c++/4.5/bits/stl_algobase.h:404 | |
| #4 0x00007ffff21faab5 in std::__copy_move_a2<false, double*, double*> (__first=0xfdd360, __last=0xfdd3b0, __result=0x0) at /usr/include/c++/4.5/bits/stl_algobase.h:442 | |
| #5 0x00007ffff21fa17a in std::copy<double*, double*> (__first=0xfdd360, __last=0xfdd3b0, __result=0x0) at /usr/include/c++/4.5/bits/stl_algobase.h:474 | |
| #6 0x00007ffff2302303 in blue_sky::bs_arrbase<double>::assign<double*> (this=0x12a5ea0, start=0xfdd360, finish=0xfdd3b0) at kernel/include/bs_arrbase.h:156 | |
| #7 0x00007ffff2300871 in blue_sky::python::test_nparray<blue_sky::bs_array<double, blue_sky::bs_nparray>, blue_sky::bs_array<double, blue_sky::vector_traits> > (a=..., b=...) | |
| at kernel/src/python/bs_nparray.cpp:64 | |
| #8 0x00007ffff2322758 in boost::python::detail::invoke<boost::python::to_python_value<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true> const&>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true> (*)(blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>), boost::python::arg_from_python<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true> >, boost::python::arg_from_python<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true> > > (rc=..., f=@0x11a6e28, ac0=..., ac1=...) at /opt/libs/boost/boost/python/detail/invoke.hpp:75 | |
| #9 0x00007ffff231fa4f in impl<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true> (*)(blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>), boost::python::default_call_policies, boost::mpl::vector3<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true> > >::operator() (this=0x11a6e28, args_=(<numpy.ndarray at remote 0x12a1a70>, <numpy.ndarray at remote 0x129da20>)) at /opt/libs/boost/boost/python/detail/caller.hpp:223 | |
| #10 0x00007ffff231cc21 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true> (*)(blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>), boost::python::default_call_policies, boost::mpl::vector3<blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::vector_traits>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true>, blue_sky::smart_ptr<blue_sky::bs_array<double, blue_sky::bs_nparray>, true> > > >::operator() (this=0x11a6e20, args=(<numpy.ndarray at remote 0x12a1a70>, <numpy.ndarray at remote 0x129da20>), kw= | |
| 0x0) at /opt/libs/boost/boost/python/object/py_function.hpp:38 | |
| #11 0x00007ffff07ba7cb in boost::python::objects::py_function::operator() (this=0x11a6e50, args=(<numpy.ndarray at remote 0x12a1a70>, <numpy.ndarray at remote 0x129da20>), kw=0x0) | |
| at ./boost/python/object/py_function.hpp:143 | |
| #12 0x00007ffff07b8319 in boost::python::objects::function::call (this=0x11a6e40, args=(<numpy.ndarray at remote 0x12a1a70>, <numpy.ndarray at remote 0x129da20>), keywords=0x0) | |
| at libs/python/src/object/function.cpp:226 | |
| #13 0x00007ffff07b9a65 in boost::python::objects::(anonymous namespace)::bind_return::operator() (this=0x7fffffffce80) at libs/python/src/object/function.cpp:585 | |
| #14 0x00007ffff07ba4c5 in boost::detail::function::void_function_ref_invoker0<boost::python::objects::<unnamed>::bind_return, void>::invoke(boost::detail::function::function_buffer &) ( | |
| function_obj_ptr=...) at ./boost/function/function_template.hpp:188 | |
| ---Type <return> to continue, or q <return> to quit---q | |
| Quit | |
| (gdb) up 7 | |
| #7 0x00007ffff2300871 in blue_sky::python::test_nparray<blue_sky::bs_array<double, blue_sky::bs_nparray>, blue_sky::bs_array<double, blue_sky::vector_traits> > (a=..., b=...) | |
| at kernel/src/python/bs_nparray.cpp:64 | |
| 64 res->assign(a->begin(), a->end()); | |
| (gdb) l | |
| 59 std::cout << a->size () << std::endl; | |
| 60 std::cout << a->ss (0) << std::endl; | |
| 61 | |
| 62 *res = *a; | |
| 63 res->assign(*a); | |
| 64 res->assign(a->begin(), a->end()); | |
| 65 //*res = *a->clone(); | |
| 66 res->resize(sz + 1); | |
| 67 for(ulong i = 0; i < sz; ++i) | |
| 68 (*res)[i] = (*a)[i] + (*b)[i]; | |
| (gdb) |
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