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compile output from rJava_0.9-7.tar.gz on OS X 10.10, R 3.1.2
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~ % R CMD INSTALL rJava_0.9-7.tar.gz | |
* installing to library '/Library/Frameworks/R.framework/Versions/3.1/Resources/library' | |
* installing *source* package 'rJava' ... | |
checking for gcc... clang | |
checking whether the C compiler works... yes | |
checking for C compiler default output file name... a.out | |
checking for suffix of executables... | |
checking whether we are cross compiling... no | |
checking for suffix of object files... o | |
checking whether we are using the GNU C compiler... yes | |
checking whether clang accepts -g... yes | |
checking for clang option to accept ISO C89... none needed | |
checking how to run the C preprocessor... clang -E | |
checking for grep that handles long lines and -e... /usr/bin/grep | |
checking for egrep... /usr/bin/grep -E | |
checking for ANSI C header files... rm: conftest.dSYM: is a directory | |
rm: conftest.dSYM: is a directory | |
yes | |
checking for sys/wait.h that is POSIX.1 compatible... yes | |
checking for sys/types.h... yes | |
checking for sys/stat.h... yes | |
checking for stdlib.h... yes | |
checking for string.h... yes | |
checking for memory.h... yes | |
checking for strings.h... yes | |
checking for inttypes.h... yes | |
checking for stdint.h... yes | |
checking for unistd.h... yes | |
checking for string.h... (cached) yes | |
checking sys/time.h usability... yes | |
checking sys/time.h presence... yes | |
checking for sys/time.h... yes | |
checking for unistd.h... (cached) yes | |
checking for an ANSI C-conforming const... yes | |
checking whether time.h and sys/time.h may both be included... yes | |
configure: checking whether clang supports static inline... | |
yes | |
checking whether setjmp.h is POSIX.1 compatible... yes | |
checking whether sigsetjmp is declared... yes | |
checking whether siglongjmp is declared... yes | |
checking Java support in R... present: | |
interpreter : '/usr/bin/java' | |
archiver : '/usr/bin/jar' | |
compiler : '/usr/bin/javac' | |
header prep.: '/usr/bin/javah' | |
cpp flags : '-I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin' | |
java libs : '-L/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/lib/server -ljvm' | |
checking whether Java run-time works... yes | |
checking whether -Xrs is supported... yes | |
checking whether JNI programs can be compiled... yes | |
checking JNI data types... ok | |
checking whether JRI should be compiled (autodetect)... yes | |
checking whether debugging output should be enabled... no | |
checking whether memory profiling is desired... no | |
checking whether threads support is requested... no | |
checking whether callbacks support is requested... no | |
checking whether JNI cache support is requested... no | |
checking whether headless init is enabled... yes | |
checking whether JRI is requested... yes | |
configure: creating ./config.status | |
config.status: creating src/Makevars | |
config.status: creating R/zzz.R | |
config.status: creating src/config.h | |
=== configuring in jri (/private/var/folders/55/yf97_st17y94xf7h97xf2x8r0000gn/T/RtmpGK1wGi/R.INSTALL2e283e98cd79/rJava/jri) | |
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. | |
checking build system type... i386-apple-darwin14.0.0 | |
checking host system type... i386-apple-darwin14.0.0 | |
checking for gcc... clang | |
checking for C compiler default output file name... a.out | |
checking whether the C compiler works... yes | |
checking whether we are cross compiling... no | |
checking for suffix of executables... | |
checking for suffix of object files... o | |
checking whether we are using the GNU C compiler... yes | |
checking whether clang accepts -g... yes | |
checking for clang option to accept ISO C89... none needed | |
checking how to run the C preprocessor... clang -E | |
checking for grep that handles long lines and -e... /usr/bin/grep | |
checking for egrep... /usr/bin/grep -E | |
checking for ANSI C header files... rm: conftest.dSYM: is a directory | |
rm: conftest.dSYM: is a directory | |
yes | |
checking whether Java interpreter works... checking whether JNI programs can be compiled... yes | |
checking whether JNI programs can be run... yes | |
checking JNI data types... ok | |
checking whether Rinterface.h exports R_CStackXXX variables... yes | |
checking whether Rinterface.h exports R_SignalHandlers... yes | |
configure: creating ./config.status | |
config.status: creating src/Makefile | |
config.status: creating Makefile | |
config.status: creating run | |
config.status: creating src/config.h | |
** libs | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Rglue.c -o Rglue.o | |
Rglue.c:847:13: warning: unused function 'new_jrectRef' [-Wunused-function] | |
static SEXP new_jrectRef(JNIEnv *env, jobject a, const char *sig, SEXP dim ) { | |
^ | |
1 warning generated. | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c arrayc.c -o arrayc.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c callJNI.c -o callJNI.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c callback.c -o callback.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c fields.c -o fields.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c jri_glue.c -o jri_glue.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c loader.c -o loader.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c otables.c -o otables.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rJava.c -o rJava.o | |
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c tools.c -o tools.o | |
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -L/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/lib/server -ljvm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation | |
(cd ../jri && make) | |
make -C src JRI.jar | |
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java | |
warning: [options] bootstrap class path not set in conjunction with -source 1.4 | |
warning: [options] source value 1.4 is obsolete and will be removed in a future release | |
warning: [options] target value 1.4 is obsolete and will be removed in a future release | |
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. | |
4 warnings | |
/usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine | |
clang -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include | |
clang -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include | |
clang -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include | |
clang -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include | |
clang -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin | |
clang -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -Wall -mtune=core2 -g -O2 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin -fno-common -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/jre/../include/darwin | |
clang -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -llzma -lz -licucore -lm -liconv | |
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java | |
warning: [options] bootstrap class path not set in conjunction with -source 1.4 | |
warning: [options] source value 1.4 is obsolete and will be removed in a future release | |
warning: [options] target value 1.4 is obsolete and will be removed in a future release | |
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. | |
4 warnings | |
/usr/bin/jar fc JRI.jar org libjri.jnilib | |
rm -f libjri.jnilib | |
cp src/libjri.jnilib libjri.jnilib | |
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java | |
warning: [options] bootstrap class path not set in conjunction with -source 1.4 | |
warning: [options] source value 1.4 is obsolete and will be removed in a future release | |
warning: [options] target value 1.4 is obsolete and will be removed in a future release | |
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. | |
Note: examples/rtest.java uses or overrides a deprecated API. | |
Note: Recompile with -Xlint:deprecation for details. | |
4 warnings | |
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java | |
warning: [options] bootstrap class path not set in conjunction with -source 1.4 | |
warning: [options] source value 1.4 is obsolete and will be removed in a future release | |
warning: [options] target value 1.4 is obsolete and will be removed in a future release | |
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. | |
Note: examples/rtest2.java uses or overrides a deprecated API. | |
Note: Recompile with -Xlint:deprecation for details. | |
4 warnings | |
installing via 'install.libs.R' to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/rJava | |
** R | |
** inst | |
** preparing package for lazy loading | |
** help | |
*** installing help indices | |
** building package indices | |
** testing if installed package can be loaded | |
* DONE (rJava) |
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