Two atoms different elements

two-atoms-two-elements.json

{
  "temperature_control": false,
  "epsilon": -0.4000000059604645,
  "sigma": 0.14,
  "lennard_jones_forces": true,
  "coulomb_forces": false,
  "width": 4.5,
  "height": 3,
  "atoms": {
    "X": [
      2.44,
      1.87
    ],
    "Y": [
      1.46,
      1.46
    ],
    "VX": [
      -0.0003135102226851514,
      0.0003135102226851514
    ],
    "VY": [
      0,
      0
    ],
    "CHARGE": [
      0,
      0
    ]
  }
}

two-atoms-two-elements.mml

<?xml version="1.0" encoding="UTF-8"?>
<java version="1.6.0_31" class="java.beans.XMLDecoder">
 <object id="Element0" class="org.concord.mw2d.models.Element">
  <void property="epsilon">
   <double>0.4000000059604645</double>
  </void>
  <void property="mass">
   <double>0.16666666666666666</double>
  </void>
  <void property="sigma">
   <double>14.0</double>
  </void>
 </object>
 <object id="Element1" class="org.concord.mw2d.models.Element">
  <void property="ID">
   <int>1</int>
  </void>
  <void property="mass">
   <double>0.3333333333333333</double>
  </void>
  <void property="sigma">
   <double>14.0</double>
  </void>
 </object>
 <object id="Element2" class="org.concord.mw2d.models.Element">
  <void property="ID">
   <int>2</int>
  </void>
  <void property="mass">
   <double>0.5</double>
  </void>
  <void property="sigma">
   <double>21.0</double>
  </void>
 </object>
 <object id="Element3" class="org.concord.mw2d.models.Element">
  <void property="ID">
   <int>3</int>
  </void>
  <void property="mass">
   <double>16</double>
  </void>
  <void property="sigma">
   <double>14.0</double>
  </void>
 </object>
 <object class="org.concord.mw2d.models.Affinity">
  <void property="epsilon">
   <void method="put">
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     <void property="element1">
      <object idref="Element2"/>
     </void>
     <void property="element2">
      <object idref="Element3"/>
     </void>
    </object>
    <double>0.1</double>
   </void>
   <void method="put">
    <object id="Pair1" class="org.concord.mw2d.models.Pair">
     <void property="element1">
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    <double>0.1</double>
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    <double>0.1</double>
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    <double>0.1</double>
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  <void property="sigma">
   <void method="put">
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   <void method="put">
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    <double>9.899494936611665</double>
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   <void method="put">
    <object idref="Pair2"/>
    <double>19.79898987322333</double>
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   <void method="put">
    <object idref="Pair3"/>
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   <void method="put">
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  <void property="lightSource">
   <object class="org.concord.mw2d.models.LightSource"/>
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  <void property="numberOfParticles">
   <int>2</int>
  </void>
  <void property="properties">
   <void method="put">
    <string>filename</string>
    <string>two-neutral-atoms$0.mml</string>
   </void>
   <void method="put">
    <string>date</string>
    <object class="java.util.Date">
     <long>1337195613000</long>
    </object>
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   <void method="put">
    <string>url</string>
    <string>/Users/ddamelin/Development/lab.legacy-mw-content/potential-tests/two-neutral-atoms/two-neutral-atoms$0.mml</string>
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   <void method="put">
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   <void method="put">
    <string>codebase</string>
    <string>/Users/ddamelin/Development/lab.legacy-mw-content/potential-tests/two-neutral-atoms</string>
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  <void property="quantumRule">
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 <object class="org.concord.mw2d.models.MolecularModel$State"/>
</java>