sg-s

[tool.poetry]
name = "test"
version = "0.1.0"
description = ""
authors = ["Srinivas Gorur-Shandilya <code@srinivas.gs>"]
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.12"

sg-s

[tool.poetry]
name = "ideas-python-utils"
version = "23.1.31"
description = "Python utilities for tools in IDEAS"
authors = ["Srinivas Gorur-Shandilya <srinivas@inscopix.com>"]
readme = "README.md"
packages = [{include = "ideas"}]

[tool.poetry.dependencies]
python = ">=3.9,<3.12"

sg-s

Problem

poetry shits the bed when trying to install ipykernel on Macs with Apple Silicon

reason

Microsoft.

Yeah. They made something called debugpy that ipykernel depends on which fails for inscritable reasons.

sg-s

Spike sorting packages

Name	Platform	Notes
kilosort	MATLAB	+ drift correction, GPU
mountainsort

2. mountainsort
3. wave_clus wavelets + super-paramagnetic clustering

sg-s

What you want to do:

• Write a package in Julia and develop it with the ultimate goal of releasing it for others to use

How to do it

1. Open Julia
2. Install PkgTemplates using using Pkg; Pkg.add("PkgTemplates")
3. using PkgTemplates
4. Create a template using your git user name: t = Template(user="sg-s")

sg-s

You submitted a patch to someone else's repository, and now you want your fork to sync with their repo

1. Clone your fork (if you haven't already)
2. git remote add upstream git://github.com/ORIGINAL-DEV-USERNAME/REPO-YOU-FORKED-FROM.git
3. git fetch upstream
4. git pull upstream master

Someone else has opened a PR on your repo, and you want to check that their code works before merging

sg-s

A common problem in software development and research is the "do-something"-"save data" loop. Often we are saving structured data over and over again, and this document looks at the fastest way to do this.

Solutions I will not consider

Writing each chunk of data to its own file

I will not consider this because:

1. how do we combine these files later? This just kicks the can down the road

sg-s

How to make a vector

a = [1; 2; 3]
a = [1, 2, 3] % avoid
a = zeros(10,1)
a = ones(10,1)
a = NaN(10,1)
a = linspace(0,1,10)
a = logspace(-1,1,10)

sg-s

The data exists

If data is split across multiple files that are sequentially numbered, then it is foolish to beleive that every file exists. Some files can go missing, or be corrupted.

Files with the same name and the same size contain the same data

I learnt the hard way that one version can be corrupted, and the other version is fine, and it's all too easy to replace to good version with the corrupted version

sg-s

Alternate DNS  
198.101.242.72
23.253.163.53

BlockAid Public DNS (or PeerDNS)  
205.204.88.60
178.21.23.150

Censurfridns  
91.239.100.100