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sgsfak/export_clinical.md

Last active November 15, 2023 17:53
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Export Clinical Data options
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export_clinical.md

Making (clinical) data available

Export in files

  • Single denormalized table (e.g. CSV)

  • Multiple CSVs / PArquets linked together

Export in structured formats

OMOP

  • OMOP CDM in SQLite or DuckDB: Single file!

  • Alternative (simpler) relational model OMOP-Like

FHIR

  • JSON, XML, RDF (turtle) per FHIR standard
  • Protobuf froom Google

CDISC ODM

other...

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