Created
October 18, 2015 03:11
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mpi4py error (on RandomDisorder aka laptop)
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| Downloading/unpacking mpi4py | |
| Running setup.py (path:/Users/shantenu/repex-test/build/mpi4py/setup.py) egg_info for package mpi4py | |
| Installing collected packages: mpi4py | |
| Running setup.py install for mpi4py | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| checking for library 'pthread' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'mpe' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'lmpe' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'mpe' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-mpe.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-mpe.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "mpe" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-mpi' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt-mpi.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt-mpi.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt-mpi" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-hyb' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-hyb' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt-hyb.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt-hyb.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt-hyb" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| checking for MPI compile and link ... | |
| checking for header 'mpi.h' ... | |
| /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _configtest.c -o _configtest.o | |
| _configtest.c:2:10: fatal error: 'mpi.h' file not found | |
| #include <mpi.h> | |
| ^ | |
| 1 error generated. | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| failure. | |
| error: Cannot find 'mpi.h' header. Check your configuration!!! | |
| Complete output from command /Users/shantenu/repex-test/bin/python -c "import setuptools, tokenize;__file__='/Users/shantenu/repex-test/build/mpi4py/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/dg/3h29j37d3ls3473531cs2ftc0000gq/T/pip-lqR3kh-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/shantenu/repex-test/bin/../include/site/python2.7: | |
| running install | |
| running build | |
| running build_src | |
| running build_py | |
| creating build | |
| creating build/lib.macosx-10.6-x86_64-2.7 | |
| creating build/lib.macosx-10.6-x86_64-2.7/mpi4py | |
| copying src/__init__.py -> build/lib.macosx-10.6-x86_64-2.7/mpi4py | |
| copying src/rc.py -> build/lib.macosx-10.6-x86_64-2.7/mpi4py | |
| creating build/lib.macosx-10.6-x86_64-2.7/mpi4py/include | |
| creating build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi4py.h -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi4py.MPI.h -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi4py.MPI_api.h -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/__init__.pxd -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/MPI.pxd -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi_c.pxd -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/__init__.pyx -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi.pxi -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/include/mpi4py/mpi4py.i -> build/lib.macosx-10.6-x86_64-2.7/mpi4py/include/mpi4py | |
| copying src/MPI.pxd -> build/lib.macosx-10.6-x86_64-2.7/mpi4py | |
| copying src/mpi_c.pxd -> build/lib.macosx-10.6-x86_64-2.7/mpi4py | |
| running build_clib | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| checking for library 'pthread' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'mpe' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'lmpe' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'mpe' dylib library | |
| creating build/temp.macosx-10.6-x86_64-2.7 | |
| creating build/temp.macosx-10.6-x86_64-2.7/src | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-mpe.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-mpe.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "mpe" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-mpi' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt-mpi.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt-mpi.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt-mpi" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| checking for library 'vt-hyb' ... | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-hyb' dylib library | |
| /usr/bin/gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt-hyb.c -o build/temp.macosx-10.6-x86_64-2.7/src/pmpi-vt-hyb.o | |
| unable to execute /usr/bin/gcc-4.2: No such file or directory | |
| warning: build_clib: building library "vt-hyb" failed | |
| warning: build_clib: command '/usr/bin/gcc-4.2' failed with exit status 1 | |
| running build_ext | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| checking for MPI compile and link ... | |
| checking for header 'mpi.h' ... | |
| /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _configtest.c -o _configtest.o | |
| _configtest.c:2:10: fatal error: 'mpi.h' file not found | |
| #include <mpi.h> | |
| ^ | |
| 1 error generated. | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| failure. | |
| error: Cannot find 'mpi.h' header. Check your configuration!!! | |
| ---------------------------------------- | |
| Cleaning up... | |
| Command /Users/shantenu/repex-test/bin/python -c "import setuptools, tokenize;__file__='/Users/shantenu/repex-test/build/mpi4py/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/dg/3h29j37d3ls3473531cs2ftc0000gq/T/pip-lqR3kh-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/shantenu/repex-test/bin/../include/site/python2.7 failed with error code 1 in /Users/shantenu/repex-test/build/mpi4py | |
| Storing debug log for failure in /Users/shantenu/.pip/pip.log |
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