isaacs

# Hello, and welcome to makefile basics.
#
# You will learn why `make` is so great, and why, despite its "weird" syntax,
# it is actually a highly expressive, efficient, and powerful way to build
# programs.
#
# Once you're done here, go to
# http://www.gnu.org/software/make/manual/make.html
# to learn SOOOO much more.

lh3

/*
  For any 1<k<=64, let mask=(1<<k)-1. hash_64() is a bijection on [0,1<<k), which means
  hash_64(x, mask)==hash_64(y, mask) if and only if x==y. hash_64i() is the inversion of
  hash_64(): hash_64i(hash_64(x, mask), mask) == hash_64(hash_64i(x, mask), mask) == x.
*/

// Thomas Wang's integer hash functions. See <https://gist.github.com/lh3/59882d6b96166dfc3d8d> for a snapshot.
uint64_t hash_64(uint64_t key, uint64_t mask)
{
	key = (~key + (key << 21)) & mask; // key = (key << 21) - key - 1;

davfre

SAM and BAM filtering one-liners

@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/

Please extend with additional/faster/better solutions via a pull request!

BWA mapping (using piping for minimal disk I/O)

badboy

Original link: http://www.concentric.net/~Ttwang/tech/inthash.htm
Taken from: http://web.archive.org/web/20071223173210/http://www.concentric.net/~Ttwang/tech/inthash.htm
Reformatted using pandoc

Integer Hash Function

Thomas Wang, Jan 1997

last update Mar 2007

killercup

/*
 * I add this to html files generated with pandoc.
 */

html {
  font-size: 100%;
  overflow-y: scroll;
  -webkit-text-size-adjust: 100%;
  -ms-text-size-adjust: 100%;
}

dypsilon

Frontend Development

Attention: the list was moved to

https://github.com/dypsilon/frontend-dev-bookmarks

This page is not maintained anymore, please update your bookmarks.

---

cosimo

This is the list of exit codes for wget:

0       No problems occurred
1       Generic error code
2       Parse error — for instance, when parsing command-line options, the .wgetrc or .netrc…
3       File I/O error
4       Network failure
5       SSL verification failure
6       Username/password authentication failure
7       Protocol errors

astaxie

The Case For Go

• Iron.io: How We Went from 30 Servers to 2 with Go
• Go at Google: Language Design in the Service of Software Engineering
• Behind the Scenes: Big Data at Torbit
• pool.ntp.org DNS server in Go
• Juju at Canonical
• Go at bitly
• NSQ: realtime distributed message processing at scale

nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
# 

ianmackinnon

# gcc -Wall -o match match.c && ./match
#


#include <stdio.h>
#include <string.h>
#include <regex.h>