Skip to content

Instantly share code, notes, and snippets.

@shravankumar147
Last active May 9, 2017 03:22
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save shravankumar147/767454d4cf70c5960200074dee2856a3 to your computer and use it in GitHub Desktop.
Save shravankumar147/767454d4cf70c5960200074dee2856a3 to your computer and use it in GitHub Desktop.
response_correct_fld0.05.mat, response_fld0.05_correct.mat both of these .mat files contains the index values for the correct responses of size 1470x1,1837x1 respectively. Using these we extract eegdata from S, and nback,ctype targets, along with processed_metadata. All these values are put together in a single mat file called data147.mat/data18…
load('processed_target_response_2s.mat')
load('S1.mat')
load('etc\response_correct_fld0.05.mat')
nback_target = nback_target(idx);
ctype_target = ctype_target(idx);
processed_meta_2s = processed_meta_2s(idx,:);
eegdata = S;
save data1470.mat eegdata nback_target ctype_target processed_meta_2s
load('processed_target_response_2s.mat')
load('S2.mat')
load('etc\response_fld0.05_correct.mat') % gives idx
nback_target = nback_target(idx);
ctype_target = ctype_target(idx);
processed_meta_2s = processed_meta_2s(idx,:);
eegdata = S;
save data1837.mat eegdata nback_target ctype_target processed_meta_2s
clear all;
clc;
% loading Preprocessed_2s, which contains data
load('Preprocessed_response_2s.mat')
% loading correct respose indices
load('etc\response_fld0.05_correct.mat');%==>S2.mat
% load('etc\response_correct_fld0.05.mat');%==>S1.mat
S=[];
for s = 1:length(Preprocessed_2s)
% if any(s==[3,4,12,23])
% continue;
% end
% subjects exluded
if any(s ==[3,4,12,19,22,23,33,34])
continue;
end
% extracting n-back features from the remaing subjects data
fprintf('Subject %d: Name: %s\n',s,Preprocessed_2s(s).subject)
s1 = Preprocessed_2s(s).data;
s1 = double(s1);
F2 = [];
for j = 1:size(s1,3)
F1 = [];
%fprintf('[Info]: epoch %d/%d\n',j,size(s1,3));
for i = 1:size(s1,1)
x = s1(i,:,j);
f = nback_features(x);
F1 = [F1;f];
end
F1 = F1';
F1ravel = F1(:);
F2 = [F2;F1ravel'];
end
%NOTE:
% F2= (F2-min(F2)) ./ (max(F2)-min(F2)); %This is throwing error for me
% in 2016a
% Modified:
num = F2-min(min(F2));
den = max(max(F2))-min(min(F2));
F2 = num./den;
S = [S;F2];
disp('#########################')
end
S=S(idx,:);
clear all;
clc;
stype={'char','pos','bar','pie'};
f=0;
for type=1:4
load('data1837.mat'); %chage file to data1470.mat to load other data set
%% This is where I modified for version compatibility
idx = find(strcmp(processed_meta_2s(:,4),stype{type}));
%%
S=eegdata;
nback_target=nback_target(idx,:);
fprintf('Type : %s\n',stype{type});
fprintf('Number of samples for..\n');
fprintf('0,1,2,3 back respectively :%4d,%4d,%4d,%4d\n',size(find(nback_target==0),1),size(find(nback_target==1),1),size(find(nback_target==2),1),size(find(nback_target==3),1));
a=size(find(nback_target==0),1);
b=size(find(nback_target==1),1);
c=size(find(nback_target==2),1);
d=size(find(nback_target==3),1);
e = sum([a b c d]);
fprintf('--------------------------------------------\n');
fprintf(' Test Acc F1 score\n');
for j=0:2
for k=(j+1):3
num1=j;
num2=k;
idx1=find(nback_target==num1);
idx2=find(nback_target==num2);
data1=S(idx1,:);
data2=S(idx2,:);
A=[data1;data2];
Y=[ones(size(idx1,1),1); -1*ones(size(idx2,1),1)];
ridx=randperm(size(Y,1));
A=A(ridx,:);
Y=Y(ridx,:);
[w, gamma, train, test, trainf1, testf1, time, nu]=psvm(A,Y,10,0,false,1);
% [w gamma train test time nu] = n_psvm(A,Y,0.5,5);
fprintf('%d vs %d %10.2f %10.2f\n',num1,num2,test,testf1);
end
end
fprintf('--------------------------------------------\n');
disp(e)
f =f+e;
end
disp(f)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment