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Google Summer of Code 2016
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gsoc2016.md

Summer of Code 2016 - cBioPortal for Cancer Genomics

Project: OQL Editor

Student: Shrumit Mehta

Mentor: Adam Abeshouse

This Gist is a summary of my work for GSoC 2016 with cBioPortal for Cancer Genomics.

Code

My GSoC project code resides in this repository:

https://github.com/shrumit/cbioportal-gsoc-final

All my commits in that repo can be viewed here:

https://github.com/shrumit/cbioportal-gsoc-final/commits/master?author=shrumit

The last GSoC commit is

https://github.com/shrumit/cbioportal-gsoc-final/commit/b097326ba4663158e318987e70d8e18712055724

This repository is upstream-synced with the main cBioPortal repository:

https://github.com/cBioPortal/cbioportal/

Description

My project accomplished three goals:

  1. Gene symbol annotation and replacement.
  2. Autosuggestion for incorrect/misspelled symbols.
  3. Onco Query Language (OQL) keyword helper menu.

Demo

A demo of my work can be viewed in this 4 minute video.

Future steps

  1. Work with the organization to release code into production.
  2. Make adjustments as the OQL specification evolves.
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